mRNA_F-serratus_M_contig1431.3098.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1431.3098.1
Unique NamemRNA_F-serratus_M_contig1431.3098.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 8.850e-27
Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    1 ECFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
            EC+  +AC GG+T S +YCL+GYEGPYC+VCS  Y A LG +C +C DR  SI +   ++V      +A  SY VS E  G  +GVV+     VP+Q VKIVIV WQI+TQ
Sbjct:  539 ECYNADACLGGVTGSESYCLEGYEGPYCAVCSGGYTARLGMACSKCSDRAGSIALGVSVSVAGLLFTVALVSYAVSGESEGRARGVVERTGRFVPLQSVKIVIVAWQILTQ 649          
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.670e-26
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1
Query:    4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
            C+  EAC GG+T +  YCL+GY+GPYC+VCS  + A  GF+CREC D    IV+A  LAV      +   SY+ S +  G  QG+V+ +   +P+Q VKIV+V WQ++TQ
Sbjct:  983 CYHPEACLGGVTGTAGYCLEGYQGPYCAVCSHGFSAQFGFTCRECSDSAGGIVLAVALAVAGIFAAVVVVSYVTSGKRNGRGQGIVERVALYIPLQSVKIVVVAWQVVTQ 1092          
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.750e-25
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
            C+  +AC GG+T +  YCL+GYEGPYC++CS+ Y A + F+CR C D    I +A  LAV+     +A  SY+ S E  G  +G+V+ +   +P+Q VKIV+V WQI+TQ
Sbjct: 1174 CYHADACLGGVTGTSGYCLEGYEGPYCAICSEGYSAQMSFTCRTCSDNAGGIALAAALAVVGLVLLVAVVSYVSSGERNGKGRGIVERVGRYIPLQSVKIVVVAWQIMTQ 1283          
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.510e-24
Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQVS 339
            C+  +AC GG+T+   +C +GYEGPYCSVCS+ Y   L F+C EC D    I I  V+ V      +A   +LVS E  G  +GV+  +  R+P+Q +KIV+V+WQI+TQ S
Sbjct: 1338 CYNEDACVGGMTNDPAFCQRGYEGPYCSVCSEGYSMSLAFTCTECVDDHGGIAIMVVVGVFVLGAAIALCMHLVSGEMEGARRGVIHRVVKRLPLQSIKIVVVVWQILTQFS 1449          
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.110e-24
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
            C+  +AC GG+T +  YCL+ YEGPYCS+CS  Y + LG+SC +CF R+  IV A  +AVLA    +    Y++S E       V++ +   VP+Q VKIVIV WQI+TQ
Sbjct:  990 CYNADACLGGVTGTAGYCLESYEGPYCSICSDGYASNLGYSCSKCFSRSGGIVFAVGMAVLALFVAVVVIMYIMSGEAGERRMYVLERLGWYVPLQSVKIVIVSWQILTQ 1099          
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 6.190e-24
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 1
Query:    4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAE-GRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
            C+   AC  G+T+S   CL GYEGPYCS+CS  Y AGL F C EC D    I++A+ LAV+A    +A  SY+VS + G G+ +G V+ +   +P+Q  KIV+V WQI+TQ
Sbjct: 1630 CYNANACLAGVTNSSGSCLDGYEGPYCSICSDGYTAGLSFKCSECSDSAGGIILASFLAVVALLVAVAVVSYVVSDKVGEGS-RGTVERLGRYIPLQSAKIVVVSWQILTQ 1739          
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.880e-23
Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
            C+  +AC GGIT +  YC++GYEGPYC++CS +Y A LGF+C +C +R   I++AT LAV+     +A  SY+       T   +  H+K  +P+Q +KI++V WQI+TQ
Sbjct:  580 CYNVDACVGGITGATEYCVEGYEGPYCAICSDDYSAQLGFTCSKCPNRAGGILLATALAVIGLFTVVAVVSYVAWRVDPNTGCAMAGHLKRYLPLQTLKILVVAWQIVTQ 689          
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 7.350e-23
Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
            C+  +AC GG+T +  YCL+ YEGPYCS+CS  Y + LG+SC +CF R+  I  A  LAV+A    +    Y++S E       V + +   VP+Q VKIVIV WQI+TQ
Sbjct: 1050 CYNADACLGGVTGTAGYCLESYEGPYCSICSNGYASNLGYSCSKCFSRSGGIAFAVGLAVVAVFVAVVVIRYIMSGEAGERRIYVFERLGWYVPLQSVKIVIVSWQIVTQ 1159          
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.860e-22
Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 1
Query:    4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
            C+ ++AC GG+T    YCL+GYEGPYC+VCS  Y   L F+C  C      I +A VLAV+      A ASY +S        GVV  +   +P+Q VKIVIV WQI+TQ
Sbjct:  819 CYNSDACLGGVTGRAGYCLKGYEGPYCAVCSDGYTTELAFACTRCSGGAGRIALAAVLAVVVLCVAFAVASYAMSGRVGDVRSGVVARLGQYIPLQSVKIVIVAWQILTQ 928          
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.870e-22
Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDR-TVSIVIATVLAVLASAGGLAAASYLVSAE-GRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
            C+  EAC GG+T +  YCL+GYEGPYCSVCS  Y   LGF C +C ++ T  IVI  VLAV  +    A  SY+ S E G GT  G ++ +   +P+Q VKIVI  WQI+TQ
Sbjct: 1184 CYHAEACLGGVTATSGYCLEGYEGPYCSVCSNGYSEQLGFVCSKCPEKNTGGIVILVVLAVGTTIVLAAIYSYVTSGEDGMGTGCGWIERVTRYIPLQSVKIVIAAWQILTQ 1295          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Z8_ECTSI8.850e-2750.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIY0_ECTSI1.670e-2646.36Polymorphic Outer membrane protein G/I family n=1 ... [more]
D8LSC0_ECTSI2.750e-2545.45Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5JY65_9PHAE4.510e-2444.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X5_ECTSI6.110e-2446.36Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G5Y7_ECTSI6.190e-2447.75Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FHH1_ECTSI3.880e-2343.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7Z1_9PHAE7.350e-2345.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G301_ECTSI1.860e-2246.36Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7FTI5_ECTSI1.870e-2250.00Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1431contigF-serratus_M_contig1431:141452..142036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog2880.D7G2Z8
Hectar predicted targeting categorysignal anchor
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size344
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929418.5722525-CDS-F-serratus_M_contig1431:141451..1417141622929418.5722525-CDS-F-serratus_M_contig1431:141451..141714Fucus serratus maleCDSF-serratus_M_contig1431 141452..141714 -
1690962842.881363-CDS-F-serratus_M_contig1431:141451..1417141690962842.881363-CDS-F-serratus_M_contig1431:141451..141714Fucus serratus maleCDSF-serratus_M_contig1431 141452..141714 -
1622929418.5856082-CDS-F-serratus_M_contig1431:141957..1420361622929418.5856082-CDS-F-serratus_M_contig1431:141957..142036Fucus serratus maleCDSF-serratus_M_contig1431 141958..142036 -
1690962842.8934355-CDS-F-serratus_M_contig1431:141957..1420361690962842.8934355-CDS-F-serratus_M_contig1431:141957..142036Fucus serratus maleCDSF-serratus_M_contig1431 141958..142036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1431.3098.1prot_F-serratus_M_contig1431.3098.1Fucus serratus malepolypeptideF-serratus_M_contig1431 141452..142036 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1431.3098.1

>prot_F-serratus_M_contig1431.3098.1 ID=prot_F-serratus_M_contig1431.3098.1|Name=mRNA_F-serratus_M_contig1431.3098.1|organism=Fucus serratus male|type=polypeptide|length=114bp
ECFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRT
VSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVK
IVIVMWQIITQVS*
back to top

mRNA from alignment at F-serratus_M_contig1431:141452..142036-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1431.3098.1 ID=mRNA_F-serratus_M_contig1431.3098.1|Name=mRNA_F-serratus_M_contig1431.3098.1|organism=Fucus serratus male|type=mRNA|length=585bp|location=Sequence derived from alignment at F-serratus_M_contig1431:141452..142036- (Fucus serratus male)
GAATGTTTCCTTACTGAGGCATGCGCAGGGGGGATAACGGACTCGTTGAA TTACTGCCTTCAAGGATACGAAGGGCCATGTAAGAGTGATTAGAAACGAT AGCATCGATTTAGCGTTTAAGCGTTAAAGTATTATCGAAGTAACCTCCAA TTGTATCACCTAAATTGTAATTTAATGATATCAAAAGTATGATGCCCAAA CACATGCCCACGCAATAGCCTCTATAGGGAGGAGGTGCTATTTTCGTATT TTCGTCGCCTCGACATAGAGAGTTCATACCGGCACTCTTTCACATGATAC GTTTTACTACCTTTGTTGACAGATTGCTCTGTCTGCAGCAAGAACTACGT GGCTGGCCTAGGATTCTCCTGCCGAGAGTGCTTCGATCGCACGGTTAGCA TCGTAATCGCAACTGTGCTCGCTGTGCTGGCATCAGCTGGTGGATTGGCC GCCGCCTCGTACCTCGTATCCGCGGAAGGAAGAGGCACTGTGCAAGGGGT TGTGGATCACATAAAGCACAGGGTACCGATGCAGCCTGTAAAAATCGTCA TCGTCATGTGGCAGATCATAACACAAGTAAGCTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1431:141452..142036-

>mRNA_F-serratus_M_contig1431.3098.1 ID=mRNA_F-serratus_M_contig1431.3098.1|Name=mRNA_F-serratus_M_contig1431.3098.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1431:141452..142036- (Fucus serratus male)
GAATGTTTCCTTACTGAGGCATGCGCAGGGGGGATAACGGACTCGTTGAA
TTACTGCCTTCAAGGATACGAAGGGCCATGAATGTTTCCTTACTGAGGCA
TGCGCAGGGGGGATAACGGACTCGTTGAATTACTGCCTTCAAGGATACGA
AGGGCCATATTGCTCTGTCTGCAGCAAGAACTACGTGGCTGGCCTAGGAT
TCTCCTGCCGAGAGTGCTTCGATCGCACGGTTAGCATCGTAATCGCAACT
GTGCTCGCTGTGCTGGCATCAGCTGGTGGATTGGCCGCCGCCTCGTACCT
CGTATCCGCGGAAGGAAGAGGCACTGTGCAAGGGGTTGTGGATCACATAA
AGCACAGGGTACCGATGCAGCCTGTAAAAATCGTCATCGTCATGTGGCAG
ATCATAACACAAGTAAGCTGAATTGCTCTGTCTGCAGCAAGAACTACGTG
GCTGGCCTAGGATTCTCCTGCCGAGAGTGCTTCGATCGCACGGTTAGCAT
CGTAATCGCAACTGTGCTCGCTGTGCTGGCATCAGCTGGTGGATTGGCCG
CCGCCTCGTACCTCGTATCCGCGGAAGGAAGAGGCACTGTGCAAGGGGTT
GTGGATCACATAAAGCACAGGGTACCGATGCAGCCTGTAAAAATCGTCAT
CGTCATGTGGCAGATCATAACACAAGTAAGCTGA
back to top