mRNA_F-serratus_M_contig143.3084.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3084.1
Unique NamemRNA_F-serratus_M_contig143.3084.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig143.3084.1 vs. uniprot
Match: D8LTN4_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTN4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.490e-14
Identity = 47/92 (51.09%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   58 LVDVGGDEDSDKDKFGEDGGRGVDGGGGMRRLRLA----SRRISSNARKRRCADETCLVGASFGFEGKPAVYCSAHKDAGMVNATYRRCEGP 321
            LVDVGGD+  D +   +D G G       R+ R A     +R   NA KRRCAD TC +GASF   G+PA YCSAH DAGMVN T+R C  P
Sbjct:  399 LVDVGGDDPEDDEDALDDPGVGT-----TRKRRSAVGPVKKRSPPNAWKRRCADGTCQLGASFAMRGEPAKYCSAHSDAGMVNVTHRLCMDP 485
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BLAST of mRNA_F-serratus_M_contig143.3084.1 vs. uniprot
Match: A0A6H5JT02_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT02_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.560e-14
Identity = 48/97 (49.48%), Postives = 57/97 (58.76%), Query Frame = 1 
Query:   43 ERDDTLVDVGGDEDSDKDKFGEDGGRGVDGGGGMRRLRLA----SRRISSNARKRRCADETCLVGASFGFEGKPAVYCSAHKDAGMVNATYRRCEGP 321
            E D  LVDVGGD+  D +   +D G G       R+ + A     +R   NA KRRCAD TC +GASF   G+PA YCSAH DAGMVN T+R C  P
Sbjct:  815 EEDALLVDVGGDDPEDDEDALDDAGVGT-----TRKRKGAVGPVKKRSPPNAWKRRCADGTCQLGASFAMRGEPAKYCSAHSDAGMVNVTHRLCMDP 906
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTN4_ECTSI1.490e-1451.09EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT02_9PHAE1.560e-1449.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:697892..698955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size389
Cds size387
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929416.4071805-CDS-F-serratus_M_contig143:697891..6979551622929416.4071805-CDS-F-serratus_M_contig143:697891..697955Fucus serratus maleCDSF-serratus_M_contig143 697892..697955 -
1690962841.8444898-CDS-F-serratus_M_contig143:697891..6979551690962841.8444898-CDS-F-serratus_M_contig143:697891..697955Fucus serratus maleCDSF-serratus_M_contig143 697892..697955 -
1622929416.4227154-CDS-F-serratus_M_contig143:698632..6989551622929416.4227154-CDS-F-serratus_M_contig143:698632..698955Fucus serratus maleCDSF-serratus_M_contig143 698633..698955 -
1690962841.853486-CDS-F-serratus_M_contig143:698632..6989551690962841.853486-CDS-F-serratus_M_contig143:698632..698955Fucus serratus maleCDSF-serratus_M_contig143 698633..698955 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3084.1prot_F-serratus_M_contig143.3084.1Fucus serratus malepolypeptideF-serratus_M_contig143 697892..698955 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3084.1

>prot_F-serratus_M_contig143.3084.1 ID=prot_F-serratus_M_contig143.3084.1|Name=mRNA_F-serratus_M_contig143.3084.1|organism=Fucus serratus male|type=polypeptide|length=129bp
MGSVGTEGNEEGDAERDDTLVDVGGDEDSDKDKFGEDGGRGVDGGGGMRR
LRLASRRISSNARKRRCADETCLVGASFGFEGKPAVYCSAHKDAGMVNAT
YRRCEGPIVPCLTVTGPSAGAIVVPDSTW
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mRNA from alignment at F-serratus_M_contig143:697892..698955-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3084.1 ID=mRNA_F-serratus_M_contig143.3084.1|Name=mRNA_F-serratus_M_contig143.3084.1|organism=Fucus serratus male|type=mRNA|length=1064bp|location=Sequence derived from alignment at F-serratus_M_contig143:697892..698955- (Fucus serratus male)
ATGGGTAGCGTGGGTACCGAGGGCAACGAGGAAGGTGACGCGGAGCGGGA
CGATACTCTGGTAGACGTGGGCGGGGACGAGGACTCTGACAAGGACAAAT
TCGGGGAGGATGGTGGACGGGGAGTGGACGGCGGCGGTGGTATGAGACGC
TTGAGGCTCGCGAGTAGGCGCATTTCCTCTAACGCGCGGAAGCGGCGGTG
CGCTGATGAAACGTGCCTAGTAGGGGCCAGCTTCGGGTTCGAGGGGAAGC
CGGCTGTATACTGCAGCGCTCACAAGGACGCGGGGATGGTGAACGCTACA
TACCGGCGCTGCGAGGGGCCTATGTGAGCCAAATACGAAGCGGGAGAAAG
CTCGATGTATTGTAGAAGTTACCGGTGGTCCTGTAAAGCACGAGAGTACC
GTAGGTTCTGTCGATAGGCTTGAGGTTTCCGGCAGGCACGCGGATGCCCT
TTGTTTGTGATGGTACCCCAGGTCTATCAATAGATATGACTACAGTAGGA
CCCACTTTGGAGGTTCCTTTGATTGGCCATGCTTATTTTCGACTACGATA
TGAATATAACTATCATAGATAAAGACGCTTGGGGTTCTTTGCGAGCTAAT
AGGGCTATCACTGGCAATAGTGAGCGAGCTTGGGGGCTTGAACCTGCTAT
CTTGTCGGTAAACCAACCAAATATATGAGACAAGGGGAGGGGGGCGTGCG
GAAGGGTCGCGCACGTCTTTCGAAAATCTGTGACGGGGGTGATGGAGTGT
CTACATTTTGGGTCTTGCTGCTTCCTGGCACGAATCATGCAAGGGTTTGT
TTGTGACAGCCAAGAGTAAATTCGCGTGTTGAACAGTTCCCTCTCGGCCC
TTGTACTGTACATTGATTATTCATGAATAGTACCGGGGGCAGTTATACTC
GGAGTGCAAGGTTTGTCTTGCTCTTTGTAAGAAAAAATGACAGCTTAATC
GTTCGTACGTACTTACAGTTCCCAAAATGGACCCAACGCTTGCTTGCAAG
TGTGCCTTGTCTGACGGTGACGGGTCCTTCGGCAGGTGCAATCGTCGTCC
CAGATTCAACATGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig143:697892..698955-

>mRNA_F-serratus_M_contig143.3084.1 ID=mRNA_F-serratus_M_contig143.3084.1|Name=mRNA_F-serratus_M_contig143.3084.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig143:697892..698955- (Fucus serratus male)
ATGGGTAGCGTGGGTACCGAGGGCAACGAGGAAGGTGACGCGGAGCGGGA
CGATACTCTGGTAGACGTGGGCGGGGACGAGGACTCTGACAAGGACAAAT
TCGGGGAGGATGGTGGACGGGGAGTGGACGGCGGCGGTGGTATGAGACGC
TTGAGGCTCGCGAGTAGGCGCATTTCCTCTAACGCGCGGAAGCGGCGGTG
CGCTGATGAAACGTGCCTAGTAGGGGCCAGCTTCGGGTTCGAGGGGAAGC
CGGCTGTATACTGCAGCGCTCACAAGGACGCGGGGATGGTGAACGCTACA
TACCGGCGCTGCGAGGGGCCTATATGGGTAGCGTGGGTACCGAGGGCAAC
GAGGAAGGTGACGCGGAGCGGGACGATACTCTGGTAGACGTGGGCGGGGA
CGAGGACTCTGACAAGGACAAATTCGGGGAGGATGGTGGACGGGGAGTGG
ACGGCGGCGGTGGTATGAGACGCTTGAGGCTCGCGAGTAGGCGCATTTCC
TCTAACGCGCGGAAGCGGCGGTGCGCTGATGAAACGTGCCTAGTAGGGGC
CAGCTTCGGGTTCGAGGGGAAGCCGGCTGTATACTGCAGCGCTCACAAGG
ACGCGGGGATGGTGAACGCTACATACCGGCGCTGCGAGGGGCCTATTGTG
CCTTGTCTGACGGTGACGGGTCCTTCGGCAGGTGCAATCGTCGTCCCAGA
TTCAACATGGTGTGCCTTGTCTGACGGTGACGGGTCCTTCGGCAGGTGCA
ATCGTCGTCCCAGATTCAACATGG
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