mRNA_F-serratus_M_contig1424.3039.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1424.3039.1
Unique NamemRNA_F-serratus_M_contig1424.3039.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1424.3039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1424contigF-serratus_M_contig1424:9096..10287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size519
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1424.3039.1prot_F-serratus_M_contig1424.3039.1Fucus serratus malepolypeptideF-serratus_M_contig1424 9134..9569 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929408.5433776-UTR-F-serratus_M_contig1424:9095..91331622929408.5433776-UTR-F-serratus_M_contig1424:9095..9133Fucus serratus maleUTRF-serratus_M_contig1424 9096..9133 +
1690962838.1995802-UTR-F-serratus_M_contig1424:9095..91331690962838.1995802-UTR-F-serratus_M_contig1424:9095..9133Fucus serratus maleUTRF-serratus_M_contig1424 9096..9133 +
1622929408.5765438-UTR-F-serratus_M_contig1424:9569..96951622929408.5765438-UTR-F-serratus_M_contig1424:9569..9695Fucus serratus maleUTRF-serratus_M_contig1424 9570..9695 +
1690962838.22253-UTR-F-serratus_M_contig1424:9569..96951690962838.22253-UTR-F-serratus_M_contig1424:9569..9695Fucus serratus maleUTRF-serratus_M_contig1424 9570..9695 +
1622929408.5856216-UTR-F-serratus_M_contig1424:10208..102871622929408.5856216-UTR-F-serratus_M_contig1424:10208..10287Fucus serratus maleUTRF-serratus_M_contig1424 10209..10287 +
1690962838.229936-UTR-F-serratus_M_contig1424:10208..102871690962838.229936-UTR-F-serratus_M_contig1424:10208..10287Fucus serratus maleUTRF-serratus_M_contig1424 10209..10287 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929408.5541317-CDS-F-serratus_M_contig1424:9133..93391622929408.5541317-CDS-F-serratus_M_contig1424:9133..9339Fucus serratus maleCDSF-serratus_M_contig1424 9134..9339 +
1690962838.207541-CDS-F-serratus_M_contig1424:9133..93391690962838.207541-CDS-F-serratus_M_contig1424:9133..9339Fucus serratus maleCDSF-serratus_M_contig1424 9134..9339 +
1622929408.5660307-CDS-F-serratus_M_contig1424:9499..95691622929408.5660307-CDS-F-serratus_M_contig1424:9499..9569Fucus serratus maleCDSF-serratus_M_contig1424 9500..9569 +
1690962838.2150526-CDS-F-serratus_M_contig1424:9499..95691690962838.2150526-CDS-F-serratus_M_contig1424:9499..9569Fucus serratus maleCDSF-serratus_M_contig1424 9500..9569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1424.3039.1

>prot_F-serratus_M_contig1424.3039.1 ID=prot_F-serratus_M_contig1424.3039.1|Name=mRNA_F-serratus_M_contig1424.3039.1|organism=Fucus serratus male|type=polypeptide|length=92bp
MVGERLLGSVFILATGGVIDAYLPRAYGLVIFRLYLECRGHLPTVHCEEE
GPPDVTEAFNAEWINSAIRFCSSASRGHVPAARRECQGASS*
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mRNA from alignment at F-serratus_M_contig1424:9096..10287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1424.3039.1 ID=mRNA_F-serratus_M_contig1424.3039.1|Name=mRNA_F-serratus_M_contig1424.3039.1|organism=Fucus serratus male|type=mRNA|length=1192bp|location=Sequence derived from alignment at F-serratus_M_contig1424:9096..10287+ (Fucus serratus male)
TAGCAAGTCTAGCATCCGAGGATAAAGCCATCCGCAGCATGGTCGGAGAG
AGATTGCTTGGCTCTGTCTTCATCCTGGCTACGGGGGGCGTCATTGATGC
CTACCTACCCCGTGCTTACGGACTGGTCATTTTTCGACTATATTTGGAGT
GTCGTGGGCACTTGCCGACGGTTCATTGCGAAGAAGAGGGTCCACCGGAT
GTAACAGAGGCGTTCAACGCCGAATGGATCAATTCGGCGATCAGGTGTGT
CGGAGCGTTCACTCTGCTTCTAATCTCTACCAGCTTTTCCCCCAACTGCT
GTAGTCAAACGTTTGTCGTGCAAGTTGGATTCATGAGGAATTTCGAACCT
CCACTGTAAAAAAAGGCACATAACCCCCACGCCACCCTCTTGCTCTGTCC
TTAGATTCTGTTCCAGTGCTTCTCGCGGCCATGTCCCTGCCGCGCGTAGA
GAGTGTCAAGGGGCCTCTTCATGAATGCAGCGATACTGAGATGCCAGACT
GCTGGTCGGTGATGGATCGTCAGATTGTCGAAGCATTCGGCCAGAAGAAG
AGCAAGAGCGCCTAAATAACTACGTCATGCGAGAAGTCATTCGCTTCCCA
GTGAGTTGTGACTTTTAAACCGATGGCGTCTACCAGTAGCTTGTTTTTGG
TCCCAACGGGAACACTAATGGGTTGGCTGCCCATCCTGTTCTGTATCATA
GTTTCCCTGATACCCCAACGTCCATGTCCCTGAATGTTTAGATTGCAACC
GTTCACTGTTGCTGGTTCGGTGCAGAAGCAGTTGATCATTGCTCCAAGAA
TACTACTCAACCACCCTCTAGTCGTTGTGCAGGGTGTGCAAAATGTCGTA
TAGGTTCATGTTCGGCGCGGAGTGGCCTACCAGCTTTCTTCTGGATAAAA
ACCTCCTATCCGCGCGATCATGCCGTACATTCGCACTGAGGACGAAGGCG
GGTGCGCGACTCGTCCGTTCTCCTTGGGGTGTATAGGGTTGAGAAAATAA
TCTGCCGCGGACATTCTACTGCCCTTCGGCTTTGGTGTCCACACTCGTTA
TTTGGATCCCCGCTTTTTGATCGATTGAAAAAAGCGTCGTTGGTGGTTGT
TGTTCCCTCCCAGCGTCGTCACTAAACAGAAGAACAAGGGGCCTCAGGCG
GCGAACAAGACGGTGATGGTGACAATGATGCGAATCATTCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1424:9096..10287+

>mRNA_F-serratus_M_contig1424.3039.1 ID=mRNA_F-serratus_M_contig1424.3039.1|Name=mRNA_F-serratus_M_contig1424.3039.1|organism=Fucus serratus male|type=CDS|length=552bp|location=Sequence derived from alignment at F-serratus_M_contig1424:9096..10287+ (Fucus serratus male)
ATGGTCGGAGAGAGATTGCTTGGCTCTGTCTTCATCCTGGCTACGGGGGG
CGTCATTGATGCCTACCTACCCCGTGCTTACGGACTGGTCATTTTTCGAC
TATATTTGGAGTGTCGTGGGCACTTGCCGACGGTTCATTGCGAAGAAGAG
GGTCCACCGGATGTAACAGAGGCGTTCAACGCCGAATGGATCAATTCGGC
GATCAGATGGTCGGAGAGAGATTGCTTGGCTCTGTCTTCATCCTGGCTAC
GGGGGGCGTCATTGATGCCTACCTACCCCGTGCTTACGGACTGGTCATTT
TTCGACTATATTTGGAGTGTCGTGGGCACTTGCCGACGGTTCATTGCGAA
GAAGAGGGTCCACCGGATGTAACAGAGGCGTTCAACGCCGAATGGATCAA
TTCGGCGATCAGATTCTGTTCCAGTGCTTCTCGCGGCCATGTCCCTGCCG
CGCGTAGAGAGTGTCAAGGGGCCTCTTCATGAATTCTGTTCCAGTGCTTC
TCGCGGCCATGTCCCTGCCGCGCGTAGAGAGTGTCAAGGGGCCTCTTCAT
GA
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