mRNA_F-serratus_M_contig142.3029.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig142.3029.1 vs. uniprot
Match: D8LPS8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS8_ECTSI) HSP 1 Score: 301 bits (771), Expect = 5.220e-82 Identity = 198/443 (44.70%), Postives = 240/443 (54.18%), Query Frame = 1
Query: 733 LERRSYSSRAFHFVAENRTEKLTKGSTITYGSIITFQAFHGGVLCFNQTGEAQASAFSAQPNALLTVWNLRDVGSKGPVRYGDYLFLQTGRHEVMGSSLLVKKENMTQRKSSRPITRLRTAMSYVSGGAEGDQDTDNAEERDIFPDRSQVTRKRSSTHRARRSISSPAVSAAESGNASNTGGAIAGKPKAIPFRGNNVDKAKHTGRWVILSKEDPERTVGAEVCHLDKVILEQGWLCLASDRPGDACLKNTGSIDDFCDQQQLQSTPN----KRAD---------------------------DVVKRASL--IRSEFVWTVVGVHHSAIAAKRNASAASGKSSARK---LEAAALRQLQRSKSTRLIAATKSIREMRQGGELAVLKTPEALEEGREKHLQSLRKKFLRVFGRKRSSDRKPNHGQDQYLNIGYGPASSWGKRQ 1953
LERR ++ A FV E R KGSTITYGS IT QAFHGG+LCFN G+AQASA AQPNALLTVWNL+D+ SKGPVRYGD L LQ GRHEVMGSSL++ KE T + +GG G+Q T++A TR R P A+PFRG N+DKAKHTGRWVI K+DPE T G+EVCHLD+V+L Q WL LASDRP DACLK GS+DD C +QQ QS + +R+D DVV S+ +R E W + GV S + KR LE AA RQL+RSKS RLI AT I +MR G+ V + E +E + + L LR+K LR F R+RS + P G D+ L+I YGP+S WGKR+
Sbjct: 345 LERRLHAPPAIQFVTETRRGGFNKGSTITYGSTITLQAFHGGILCFNNKGKAQASALGAQPNALLTVWNLQDLQSKGPVRYGDVLLLQMGRHEVMGSSLIMHKEPETPGSTHSSKRSGGVGSQASAGGVTGEQQTEDA------------TRNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XPVAVPFRGKNMDKAKHTGRWVIFHKDDPEATQGSEVCHLDRVVLMQTWLSLASDRPADACLKQCGSVDDHCSRQQHQSRSSTAGRERSDGGVSGRGGGGRTGARGDGAGEQRGSRQDVVVAKSVFAVRPECGWVISGVEDSG-SGKRTGXXXXXXXXXXXXXLLEGAATRQLRRSKSARLITATSVILQMRSNGQSIVRRAQEIFDETQRRRLACLRQKLLRTFRRERSRNWLPKRGGDRQLSIVYGPSSPWGKRE 772
BLAST of mRNA_F-serratus_M_contig142.3029.1 vs. uniprot
Match: F0YI78_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI78_AURAN) HSP 1 Score: 101 bits (251), Expect = 2.870e-18 Identity = 74/225 (32.89%), Postives = 108/225 (48.00%), Query Frame = 1
Query: 802 KGSTITYGSIITFQAFHGGVLCFNQTGEAQASAFSAQPNALLTVWNLRDVGSKGPVRYGDYLFLQTGRHEVMGSSLLVKKENMTQRKSSRPITRLRTAMSYVSGGAEGDQDTDN-AEERDIFPDRSQVTRKRSSTHRARRSISSPAVSAAESGNASNTGGAIAGKPKAIPFRGNNVDKAKHTGRWVILSKEDPERTVGAEVCHLDKVILEQGWLCLASDRPGDAC 1473
KG+ + YGS I QA HGG + NQ G A A P LLT+WN+ D+G G +RYGD ++LQ R+E++G+S + P + V AE + N E+ PD + SS R RR A + A+ G T G + A+P G + A+ + RWVIL ++ P T+G + H D ++L+Q L ++S R D C
Sbjct: 171 KGAVVYYGSAIALQANHGGYMGLNQHGRVDAVAIRPTPPCLLTLWNMMDLGDVGAIRYGDQVWLQCSRYELLGTSAM-------------PHDVGAEWNAIVGDIAEASRGAPNHGGEQQTGPDWEAYS---SSFARERRIARRAAETLAQGGRIRETVGRLV----AVPCGGASAVGARASARWVILHRKHPHATIGTHIMHEDDIVLQQEELYVSS-RKKDCC 374
BLAST of mRNA_F-serratus_M_contig142.3029.1 vs. uniprot
Match: A0A7S2HDC1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDC1_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.480e-13 Identity = 34/74 (45.95%), Postives = 51/74 (68.92%), Query Frame = 1
Query: 814 ITYGSIITFQAFHGGVLCFNQTGEAQASAFSAQPNALLTVWNLRDVGSKGPVRYGDYLFLQTGRHEVMGSSLLV 1035
I YGS I+ QA HG LC N + +ASA +P+A TVWN++++ G +RYGD ++LQ GR+E++GSS ++
Sbjct: 3 IYYGSTISLQAHHGNFLCMNSSRNCEASAVKNEPHAQFTVWNVKNLSGTGVMRYGDSVWLQCGRYEILGSSFMM 76
BLAST of mRNA_F-serratus_M_contig142.3029.1 vs. uniprot
Match: A0A7S2HE81_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HE81_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 3.330e-10 Identity = 28/67 (41.79%), Postives = 43/67 (64.18%), Query Frame = 1
Query: 1315 GNNVDKAKHTGRWVILSKEDPERTVGAEVCHLDKVILEQGWLCLASDRPGDACLKNTGSIDDFCDQQ 1515
G ++++AKH GRWV+ + DP+ +G EVCHLD +++EQ W+CLAS L ++ D +QQ
Sbjct: 15 GASLERAKHVGRWVLNRRHDPQGAIGKEVCHLDDLVIEQEWVCLASSTAQSVGLSDSSDKDAMLNQQ 81 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig142.3029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig142.3029.1 >prot_F-serratus_M_contig142.3029.1 ID=prot_F-serratus_M_contig142.3029.1|Name=mRNA_F-serratus_M_contig142.3029.1|organism=Fucus serratus male|type=polypeptide|length=684bp MPALERRSYSSRAFHFVAENRTEKLTKGSTITYGSIITFQAFHGGVLCFNback to top mRNA from alignment at F-serratus_M_contig142:283982..291913- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig142.3029.1 ID=mRNA_F-serratus_M_contig142.3029.1|Name=mRNA_F-serratus_M_contig142.3029.1|organism=Fucus serratus male|type=mRNA|length=7932bp|location=Sequence derived from alignment at F-serratus_M_contig142:283982..291913- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig142:283982..291913- >mRNA_F-serratus_M_contig142.3029.1 ID=mRNA_F-serratus_M_contig142.3029.1|Name=mRNA_F-serratus_M_contig142.3029.1|organism=Fucus serratus male|type=CDS|length=4104bp|location=Sequence derived from alignment at F-serratus_M_contig142:283982..291913- (Fucus serratus male)back to top |