mRNA_F-serratus_M_contig1411.2981.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1411.2981.1
Unique NamemRNA_F-serratus_M_contig1411.2981.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1411.2981.1 vs. uniprot
Match: D8LE51_ECTSI (SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE51_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 4.470e-10
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    1 GDGAGGPGGWLPLSTVKQCLGQREAGKGIQISLISLGMVMPSSREFQAVMSMTELPKGVQSCLLDP 198
            GDG GG GGWLPL  +++CLG    G  + IS  S G ++ + REFQAVMS+ ELP+ V   LL+P
Sbjct:  380 GDGVGGRGGWLPLKDIQECLGNDNCGVPVTIS--SAGSLVTACREFQAVMSLPELPERVHEFLLNP 443
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BLAST of mRNA_F-serratus_M_contig1411.2981.1 vs. uniprot
Match: A0A6H5JS06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS06_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.380e-8
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:    1 GDGAGGPGGWLPLSTVKQCLGQREAGKGIQISLISLGMVMPSSREFQAVMSMTELPKGVQSCLLDP 198
            GDG GG GGWLP   +++CLG    G  + IS    G ++ + REFQAVMS+ ELP+ V   L++P
Sbjct:  533 GDGVGGRGGWLPFKDIQECLGNDNCGVPVTIS--GAGSLVTACREFQAVMSLPELPERVHEFLVNP 596
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1411.2981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LE51_ECTSI4.470e-1051.52SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JS06_9PHAE1.380e-846.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1411contigF-serratus_M_contig1411:146782..147091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.3e-08
Seed eggNOG ortholog2880.D8LE51
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
EggNOG OGsCOG1112@1,KOG1801@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03021
Exons1
Model size310
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929399.421834-CDS-F-serratus_M_contig1411:146781..1470901622929399.421834-CDS-F-serratus_M_contig1411:146781..147090Fucus serratus maleCDSF-serratus_M_contig1411 146782..147090 +
1690962833.9378762-CDS-F-serratus_M_contig1411:146781..1470901690962833.9378762-CDS-F-serratus_M_contig1411:146781..147090Fucus serratus maleCDSF-serratus_M_contig1411 146782..147090 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1411.2981.1prot_F-serratus_M_contig1411.2981.1Fucus serratus malepolypeptideF-serratus_M_contig1411 146782..147090 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1411.2981.1

>prot_F-serratus_M_contig1411.2981.1 ID=prot_F-serratus_M_contig1411.2981.1|Name=mRNA_F-serratus_M_contig1411.2981.1|organism=Fucus serratus male|type=polypeptide|length=103bp
GDGAGGPGGWLPLSTVKQCLGQREAGKGIQISLISLGMVMPSSREFQAVM
SMTELPKGVQSCLLDPFVSRSRSNGQLPNPRLASSSSFASSSSVVAGGAG
TVS
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mRNA from alignment at F-serratus_M_contig1411:146782..147091+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1411.2981.1 ID=mRNA_F-serratus_M_contig1411.2981.1|Name=mRNA_F-serratus_M_contig1411.2981.1|organism=Fucus serratus male|type=mRNA|length=310bp|location=Sequence derived from alignment at F-serratus_M_contig1411:146782..147091+ (Fucus serratus male)
GGCGACGGCGCGGGGGGCCCGGGCGGTTGGCTCCCTCTCTCTACGGTCAA
GCAGTGTCTGGGTCAACGCGAAGCCGGCAAGGGTATTCAAATTTCTCTCA
TCAGCTTGGGCATGGTAATGCCCTCCTCGCGGGAATTCCAGGCAGTCATG
TCCATGACGGAGCTACCCAAGGGTGTCCAAAGTTGTCTGTTGGACCCCTT
CGTCAGCCGCAGCCGCAGCAACGGACAGCTCCCCAATCCTCGACTGGCGT
CATCGAGCTCGTTTGCAAGTTCATCAAGTGTGGTGGCCGGTGGCGCCGGT
ACAGTCTCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1411:146782..147091+

>mRNA_F-serratus_M_contig1411.2981.1 ID=mRNA_F-serratus_M_contig1411.2981.1|Name=mRNA_F-serratus_M_contig1411.2981.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig1411:146782..147091+ (Fucus serratus male)
GGCGACGGCGCGGGGGGCCCGGGCGGTTGGCTCCCTCTCTCTACGGTCAA
GCAGTGTCTGGGTCAACGCGAAGCCGGCAAGGGTATTCAAATTTCTCTCA
TCAGCTTGGGCATGGTAATGCCCTCCTCGCGGGAATTCCAGGCAGTCATG
TCCATGACGGAGCTACCCAAGGGTGTCCAAAGTTGTCTGTTGGACCCCTT
CGTCAGCCGCAGCCGCAGCAACGGACAGCTCCCCAATCCTCGACTGGCGT
CATCGAGCTCGTTTGCAAGTTCATCAAGTGTGGTGGCCGGTGGCGCCGGT
ACAGTCTCTGGCGACGGCGCGGGGGGCCCGGGCGGTTGGCTCCCTCTCTC
TACGGTCAAGCAGTGTCTGGGTCAACGCGAAGCCGGCAAGGGTATTCAAA
TTTCTCTCATCAGCTTGGGCATGGTAATGCCCTCCTCGCGGGAATTCCAG
GCAGTCATGTCCATGACGGAGCTACCCAAGGGTGTCCAAAGTTGTCTGTT
GGACCCCTTCGTCAGCCGCAGCCGCAGCAACGGACAGCTCCCCAATCCTC
GACTGGCGTCATCGAGCTCGTTTGCAAGTTCATCAAGTGTGGTGGCCGGT
GGCGCCGGTACAGTCTCT
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