mRNA_F-serratus_M_contig141.2963.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig141.2963.1
Unique NamemRNA_F-serratus_M_contig141.2963.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig141.2963.1 vs. uniprot
Match: A0A6H5JBZ5_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ5_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.820e-26
Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    4 LDALTGALAEGSNMASSSILGNLLQEVWKDQLYRSMVGDRLYHVHTVLTTDVENHTLQDLINRTVNVTDLPLSVFTTPEITVCYSDCSTTESSTVFLSDEFKLAWD 321
            LDA TGALAEG++ ++  +LG+LL   W DQL RS+ GDR YH+H     +V N TL D+I R  N TDLPLSVF  P ITVC   C+        LSD F+L W+
Sbjct:   97 LDAFTGALAEGTDSSTGGVLGDLLVAAWSDQLTRSIAGDRFYHLHVRNMENVANTTLMDVIGRVTNATDLPLSVFQAPSITVCDGGCAGDGDGVAVLSDNFELEWE 202
[Close]
BLAST of mRNA_F-serratus_M_contig141.2963.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 2.330e-25
Identity = 54/106 (50.94%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    4 LDALTGALAEGSNMASSSILGNLLQEVWKDQLYRSMVGDRLYHVHTVLTTDVENHTLQDLINRTVNVTDLPLSVFTTPEITVCYSDCSTTESSTVFLSDEFKLAWD 321
            LDA TGALAEG++ ++  +LG+LL   W DQL RS+ GDR YH+H     +V N TL D+I R  N TDLPLSVF  P ITVC   C+        LSD F+L W+
Sbjct:  364 LDAFTGALAEGTHSSTGGVLGDLLVAAWSDQLTRSIAGDRFYHLHARYMENVANTTLMDVIGRVTNATDLPLSVFQAPSITVCDGGCAGDGDGIAVLSDNFELEWE 469
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig141.2963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JBZ5_9PHAE6.820e-2650.94DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FQW8_ECTSI2.330e-2550.94Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig141contigF-serratus_M_contig141:521438..523115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue1.9e-21
Seed eggNOG ortholog2880.D7FQW8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peroxidase activity
EggNOG OGsKOG2408@1,KOG2408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size332
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig141.2963.1prot_F-serratus_M_contig141.2963.1Fucus serratus malepolypeptideF-serratus_M_contig141 521440..523115 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929393.803627-CDS-F-serratus_M_contig141:521439..5214671622929393.803627-CDS-F-serratus_M_contig141:521439..521467Fucus serratus maleCDSF-serratus_M_contig141 521440..521467 -
1690962831.9869325-CDS-F-serratus_M_contig141:521439..5214671690962831.9869325-CDS-F-serratus_M_contig141:521439..521467Fucus serratus maleCDSF-serratus_M_contig141 521440..521467 -
1622929393.8157315-CDS-F-serratus_M_contig141:521719..5217751622929393.8157315-CDS-F-serratus_M_contig141:521719..521775Fucus serratus maleCDSF-serratus_M_contig141 521720..521775 -
1690962832.00066-CDS-F-serratus_M_contig141:521719..5217751690962832.00066-CDS-F-serratus_M_contig141:521719..521775Fucus serratus maleCDSF-serratus_M_contig141 521720..521775 -
1622929393.8263173-CDS-F-serratus_M_contig141:521996..5221641622929393.8263173-CDS-F-serratus_M_contig141:521996..522164Fucus serratus maleCDSF-serratus_M_contig141 521997..522164 -
1690962832.0114949-CDS-F-serratus_M_contig141:521996..5221641690962832.0114949-CDS-F-serratus_M_contig141:521996..522164Fucus serratus maleCDSF-serratus_M_contig141 521997..522164 -
1622929393.8388872-CDS-F-serratus_M_contig141:523037..5231151622929393.8388872-CDS-F-serratus_M_contig141:523037..523115Fucus serratus maleCDSF-serratus_M_contig141 523038..523115 -
1690962832.0210717-CDS-F-serratus_M_contig141:523037..5231151690962832.0210717-CDS-F-serratus_M_contig141:523037..523115Fucus serratus maleCDSF-serratus_M_contig141 523038..523115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig141.2963.1

>prot_F-serratus_M_contig141.2963.1 ID=prot_F-serratus_M_contig141.2963.1|Name=mRNA_F-serratus_M_contig141.2963.1|organism=Fucus serratus male|type=polypeptide|length=110bp
LLDALTGALAEGSNMASSSILGNLLQEVWKDQLYRSMVGDRLYHVHTVLT
TDVENHTLQDLINRTVNVTDLPLSVFTTPEITVCYSDCSTTESSTVFLSD
EFKLAWDIED
back to top

mRNA from alignment at F-serratus_M_contig141:521438..523115-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig141.2963.1 ID=mRNA_F-serratus_M_contig141.2963.1|Name=mRNA_F-serratus_M_contig141.2963.1|organism=Fucus serratus male|type=mRNA|length=1678bp|location=Sequence derived from alignment at F-serratus_M_contig141:521438..523115- (Fucus serratus male)
CTCCTAGACGCCCTGACCGGCGCCCTTGCGGAAGGGAGCAACATGGCATC
TTCTTCGATACTTGGAAACTTGCTGCAGGTGAGGGATGAACCCTAGGTGA
CTAGCCAGGACAAGGCTGCGGCGAAGGAGCTTTATTATCAATCCCTCCCT
CACATGCGGTTAGCCGATCTGCTGTTGGGGTGTGTCCTCGAGGGGCCTTG
GGAGTTTTCAGTTTGAACAGGCCTTATTTTTTTTGGATGTTAACATGAAA
TCGGAAGCGAGAAAACCTTACTCTGCTGCTACCGGGGGCAACTAAATTAT
TTGCCTGTCAGCTGATGACTGTAAAAAGTAGCCCAGTGGTCATAAACTCG
GTAAAAGCTGAAACGGGGGCCTCGTACGTCACCGACGTCATATCAAGGTA
CCCATGCCCTGTGCCCTAGTCCGTGCCGGTATCGTCGCTCAGCTTCTTTA
CGAACTGCGTCTCCCGTGCGGCCCACACGTTCGTATGGCGCTCAATTTTC
TTCAGTCATTTTATATCTCTTGAGGCTCACAGGGCGTACGGCCATTGCGC
TGCCTCTCTCGGATAACATTGAAATGTAATCTCGGCTTCACTCAGTAAAG
AGGGTCGTACCACCGGGGATGAATCAAGGTTCAGCTTTTGCAACGTTTAC
AAGCAGACCAGCCAGGTGGTTGTATTTCAAATAGTTTGAGCGAAGGGCTT
CACGGAAATCACACCCCCCCTAGCAGGCATCATGGAGGGCGCCAGCTCAC
ACACGTGGTTCCCGAAGTTCATGCCTTGGGCGTGCTTCTACGCTTGTTCC
CTGTCTGTTTGAAGGAGATGGCAGCGTGTGTTGCAGTAGGTTTGAGAAGC
GCAGGGGTTTACACGCCGACCAGGAACGTCCCCGAACCCCTCTTTGATTC
TCCCCACTGAGCTCCTCGATGTTGCCGCAAACGATCGCACCGCGGTGACA
GGAAGTCTGGAAGGACCAGCTCTACCGTTCCATGGTGGGCGACAGGCTGT
ACCACGTGCACACCGTGCTAACCACGGACGTGGAGAATCATACCTTACAG
GATCTCATTAACCGTACCGTGAACGTGACGGATCTGCCCCTCTCCGTCTT
TACGACTCCGGAAATCACGGTACGTTCAGCAGGCGACCCCGAGCAGTTTG
TGGTTTTCCTTTTGTTTGGCGGAGTTTCGGGGTTTCCTGTATGGTCGTGG
GTTGAAGCGCATCGGTATTGAGTTCTGTCTGTTGTCAAAGCTTTTCCTCT
CCTAGTTAACCTACTCTAATCATATTAATAGTACTTCGCGCCACCGTCTG
CTGGCTTCTTCGTCCGCCGCTTCTCACTCGCCACCCGCAGGTGTGCTACT
CCGACTGCTCGACGACGGAATCCTCCACCGTATTTCTCTCCGACGAGTGA
GCATTCTCCCGCTCGAGCCCAAACAGAGGTCTTTTCTGGCTACTCTCGTT
GACACAAGCCGCGATATGTCGAGCGATGAAGAGTTTCCGGTTTGTGAAGG
ATCGGGTAGAGTCGTCGCAACGATTATGGCGTGAAAAGAAAAAGCGGAGC
AATATTCGTCGGGCTCGCCGCTCGCTGGGTGGCCCTCATGCCTCCATCAA
TGCTCTCCGCCTCTGTACACCACCGACTTTCACTTTTCGTTGCTTCAGGT
TTAAGTTGGCGTGGGACATCGAGGACGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig141:521438..523115-

>mRNA_F-serratus_M_contig141.2963.1 ID=mRNA_F-serratus_M_contig141.2963.1|Name=mRNA_F-serratus_M_contig141.2963.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig141:521438..523115- (Fucus serratus male)
CTCCTAGACGCCCTGACCGGCGCCCTTGCGGAAGGGAGCAACATGGCATC
TTCTTCGATACTTGGAAACTTGCTGCAGCTCCTAGACGCCCTGACCGGCG
CCCTTGCGGAAGGGAGCAACATGGCATCTTCTTCGATACTTGGAAACTTG
CTGCAGGAAGTCTGGAAGGACCAGCTCTACCGTTCCATGGTGGGCGACAG
GCTGTACCACGTGCACACCGTGCTAACCACGGACGTGGAGAATCATACCT
TACAGGATCTCATTAACCGTACCGTGAACGTGACGGATCTGCCCCTCTCC
GTCTTTACGACTCCGGAAATCACGGAAGTCTGGAAGGACCAGCTCTACCG
TTCCATGGTGGGCGACAGGCTGTACCACGTGCACACCGTGCTAACCACGG
ACGTGGAGAATCATACCTTACAGGATCTCATTAACCGTACCGTGAACGTG
ACGGATCTGCCCCTCTCCGTCTTTACGACTCCGGAAATCACGGTGTGCTA
CTCCGACTGCTCGACGACGGAATCCTCCACCGTATTTCTCTCCGACGAGT
GTGCTACTCCGACTGCTCGACGACGGAATCCTCCACCGTATTTCTCTCCG
ACGAGTTTAAGTTGGCGTGGGACATCGAGGACGTTTAAGTTGGCGTGGGA
CATCGAGGAC
back to top