mRNA_F-serratus_M_contig14.2895.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig14.2895.1 vs. uniprot
Match: A0A6H5JTK7_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK7_9PHAE) HSP 1 Score: 395 bits (1014), Expect = 3.620e-121 Identity = 279/646 (43.19%), Postives = 354/646 (54.80%), Query Frame = 2
Query: 71 IRLFLMLGFSRIVNAVEQMATGMTVTATKYDLRTYTSEDDFKGCFTSGCEPDLTLDGKLNNVAQSRWSCSEELSGETTDCYITFDLQQSFTLTKITIYFHKSNDTEREANPFVISISANDVTYADSFDGVNTPGTALLTGEEFSFPDDPVARYVRLTAVLTEDQWLSINEVEIYVDLATPAPYAGNAXXXXXXXXXXXXVALVGTVLTQAPL-----------------GNTAFASTSEP---TVSPSGIKSWQTMMPALSMSPTSGPTLMGDSGCANVTVSNTNGLDGLYVLGPNNT----FVSTATSSATIASSQVTMDCADGVSTNCDITKWTISS-DVDTGL-TYMVYDDAEHPSDVSEVWLRANCSSNTECVNSPAGVEIVCGDGSLIY---TPAPAALTSTECGIVEVAGILGEGLDGTYYDDGSSPSGGVTRYMGYDA--GDLTSNGNTLAANWTNGGCPSPSETGTGTDGDCSWREWRITPGDDNLDAHEHFTFDEADHPVDIARGILWYRLDVVEKPYGGAINITCAPADTPALPTSAPTTIAPIAASPAPAATTVPVAFVTDD-SSTRQPVNGSVPPTEGSLAVEVNGSESTDTDNTPAIIGG-AAGAVVLLALVGIVTYKKLNAPPPPSYDDLVG 1909
+ L L LG R+ VEQ A +VTATKYD R D GC T GC PDL DG LN+V +SRWSC L+G +CY TFDL S +LTK+TIYF+K +D +R NPF++S S + TY SF+ VNT TA+ GE+F+FP RYVR T L +DQWLSINE EIYVD+ATPAP XXXXXXXXXX V + G+ A T +++P+G+ P GP C NVTVSN L+G Y N +VST +ATI+SS CAD +++C++ +W I+ D D+ L TY VYD+A HPS ++EVWLR + C +SPA + I+CGDG+ TPAPA++T+++CG++EVAG G DG YYDDGS VT+Y GYD G+L SNG + AN N C + S + TG D CSWR+W I ++ FT+DEADHPVDIA G LWY D PY GA+ +TCAPA TP L +PA T PV DD ++TR PV G+ P G+ A V G E AG V LLA++G V YK + PPPSYDD +G
Sbjct: 12 VALSLALGGVRLAGGVEQKAE-YSVTATKYDTRA----SDSNGCGTDGCSPDLMNDGDLNDVPESRWSCETALAGTEFECYATFDLGSSQSLTKLTIYFYKCDDVDRATNPFIVSTSTDGTTYTTSFEDVNTIPTAIGAGEDFAFPTGSSGRYVRFTGELADDQWLSINEAEIYVDVATPAPVVPEXXXXXXXXXXXPTVEVTXXXXXXXXXXXXXXXXXXXXXXXXTSGSRAIGITXXXXAASIAPTGVXXXXXXXXXXXX-PIGGPA------CGNVTVSNAGDLNGDYASSLNGDGSVMYVSTGVIAATISSSAAPAQCADSTASDCNVNRWQIAPLDADSTLPTYWVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTILCGDGTTASGSGTPAPASVTASDCGVIEVAGTSGAESDGFYYDDGSELGDDVTQYGGYDVVNGELMSNGRAVVANRVNSTCATTSSS-TGADA-CSWRQWWIEASSSGTVSY--FTYDEADHPVDIAAGALWYTSDGSIMPYDGAVAVTCAPATTPTL-------------TPA----TSPVPTTDDDGTATRMPVEGTHSP--GTAAPVVPGGEXXXXXXXXXXXXXXVAGGVALLAILGAVAYKFKD--PPPSYDDAMG 620
BLAST of mRNA_F-serratus_M_contig14.2895.1 vs. uniprot
Match: D7G7P1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P1_ECTSI) HSP 1 Score: 218 bits (554), Expect = 2.900e-59 Identity = 154/370 (41.62%), Postives = 199/370 (53.78%), Query Frame = 2
Query: 851 VSNTNGLDGLYVLGPNN----TFVSTATSSATIASSQVTMDCADGVSTNCDITKWTIS-SDVDTGL-TYMVYDDAEHPSDVSEVWLRANCSSNTECVNSPAGVEIVCGDGSLIY---TPAPAALTSTECGIVEVAGILGEGLDGTYYDDGSSPSGGVTRYMGYDA--GDLTSNGNTLAANWTNGGCPSPSETGTGTDGDCSWREWRITPGDDNLDAHEHFTFDEADHPVDIARGILWYRLDVVEKPYGGAINITCAPADTPALPTSAPTTIAPIAASPAPAATTVPVAFVTDDSSTRQPVNGSVPPTEGSLAVEVNGSESTDTDNTPAIIGG-----AAGAVVLLALVGIVTYK-KLNAPPPPSYDDLVG 1909
VSN L+G Y N T+VST +AT+ASS CAD +++C + +W I+ SD D+ L TY+VYD+A HPS ++EVWLR + C +SPA + IVCGDG+ TPAP ++T+++C +EVAG G DG YYDDGS GVT+Y+GYD G+LTSNG + AN + C + + T TG D CSWR+W I P ++ FT+DEA HPVDIA G LWY D PY G + +TCAPA TP D ++TR PV G+ P G++A V G E D D AG V LLA++G V YK K SYDDLVG
Sbjct: 3 VSNAGDLNGDYASSLNGDGSVTYVSTGVIAATLASSDAPAQCADSSASDCTVNRWQITPSDADSTLPTYVVYDEALHPSTINEVWLRLDNCGTGGCQSSPAELTIVCGDGTTAAGSGTPAPVSVTASDCEAIEVAGTSGAESDGFYYDDGSELGDGVTQYVGYDVVNGELTSNGRAVVANRVDSTCATTT-TSTGADA-CSWRQWWIEPSSSGTVSY--FTYDEAGHPVDIAAGTLWYTSDDTVVPYDGDVVVTCAPATTPXXXXXXXXXXXXXXXXXD--------GGNDDGTATRMPVEGTHAP--GTVAPVVAGGEDGDGDXXXXXXXXXXXXXVAGGVALLAILGAVAYKLKXXXXXXXSYDDLVG 358
BLAST of mRNA_F-serratus_M_contig14.2895.1 vs. uniprot
Match: D7FRB9_ECTSI (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRB9_ECTSI) HSP 1 Score: 149 bits (376), Expect = 7.070e-38 Identity = 72/129 (55.81%), Postives = 89/129 (68.99%), Query Frame = 2
Query: 236 DGKLNNVAQSRWSCSEELSGETTDCYITFDLQQSFTLTKITIYFHKSNDTEREANPFVISISANDVTYADSFDGVNTPGTALLTGEEFSFPDDPVARYVRLTAVLTEDQWLSINEVEIYVDLATPAPYA 622
DG LN+V SRWSC L G +CY TFDL S +L K+TIYF+KSN+ +R NPFV+S S + T+ SF+ +NT T L GE+F+FP RYVR T L +DQWLS+NEVEIYVD+ATPAP A
Sbjct: 3 DGNLNDVPDSRWSCETALEGTEFECYATFDLGSSQSLIKLTIYFYKSNEEDRVTNPFVVSTSTDGTTFTTSFEDINTIPTPLGEGEDFAFPTGSSGRYVRFTGDLADDQWLSVNEVEIYVDVATPAPVA 131 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig14.2895.1 >prot_F-serratus_M_contig14.2895.1 ID=prot_F-serratus_M_contig14.2895.1|Name=mRNA_F-serratus_M_contig14.2895.1|organism=Fucus serratus male|type=polypeptide|length=623bp MLFGGMRIRLFLMLGFSRIVNAVEQMATGMTVTATKYDLRTYTSEDDFKGback to top mRNA from alignment at F-serratus_M_contig14:680818..714366- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig14.2895.1 ID=mRNA_F-serratus_M_contig14.2895.1|Name=mRNA_F-serratus_M_contig14.2895.1|organism=Fucus serratus male|type=mRNA|length=33549bp|location=Sequence derived from alignment at F-serratus_M_contig14:680818..714366- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig14:680818..714366- >mRNA_F-serratus_M_contig14.2895.1 ID=mRNA_F-serratus_M_contig14.2895.1|Name=mRNA_F-serratus_M_contig14.2895.1|organism=Fucus serratus male|type=CDS|length=3738bp|location=Sequence derived from alignment at F-serratus_M_contig14:680818..714366- (Fucus serratus male)back to top |