mRNA_F-serratus_M_contig14.2887.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig14.2887.1
Unique NamemRNA_F-serratus_M_contig14.2887.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig14.2887.1 vs. uniprot
Match: A0A7J7F8W6_DICBM (Uncharacterized protein n=1 Tax=Diceros bicornis minor TaxID=77932 RepID=A0A7J7F8W6_DICBM)

HSP 1 Score: 53.1 bits (126), Expect = 5.600e-5
Identity = 29/72 (40.28%), Postives = 40/72 (55.56%), Query Frame = 3 
Query:   42 VEPFLERVGGTLDKLEADQKRVEEAYRAVAVRFGENPSTTPNEAFFELIDRMVQMIDKAAAQNRKRAEEAAA 257
            ++ FL     T+DKL AD K  +EAY++V   FGENP TT    FF L    ++   KA  +  +  +EAAA
Sbjct: 1004 LKEFLRANSPTMDKLLADSKTAQEAYKSVVEYFGENPKTTSPSMFFSLFSHFIKAYKKAEQEVEQWKKEAAA 1075
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7J7F8W6_DICBM5.600e-540.28Uncharacterized protein n=1 Tax=Diceros bicornis m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:540741..544382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue1.2e-06
Seed eggNOG ortholog2880.D7FPH1
KEGG koko:K04512,ko:K05745,ko:K10293,ko:K11238
KEGG Pathwayko04011,ko04310,ko04810,map04011,map04310,map04810
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005522,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005886,GO:0005938,GO:0006928,GO:0006996,GO:0007010,GO:0007015,GO:0008064,GO:0008092,GO:0008150,GO:0008154,GO:0008289,GO:0009987,GO:0010638,GO:0015629,GO:0016020,GO:0016043,GO:0016477,GO:0022607,GO:0030029,GO:0030036,GO:0030041,GO:0030832,GO:0030833,GO:0030838,GO:0030865,GO:0030866,GO:0031254,GO:0031334,GO:0031344,GO:0031345,GO:0032153,GO:0032154,GO:0032155,GO:0032271,GO:0032273,GO:0032535,GO:0032956,GO:0032970,GO:0033043,GO:0034622,GO:0035091,GO:0040011,GO:0043167,GO:0043168,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044877,GO:0045010,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048870,GO:0050789,GO:0050794,GO:0051015,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051258,GO:0051493,GO:0051495,GO:0051674,GO:0060491,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0097435,GO:0098590,GO:0099568,GO:0110053,GO:0120032,GO:0120033,GO:0120035,GO:1902903,GO:1902905,GO:1904170,GO:1904171
EggNOG free text desc.actin binding
EggNOG OGsKOG1922@1,KOG1922@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04121,ko04147
Exons5
Model size529
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2887.1prot_F-serratus_M_contig14.2887.1Fucus serratus malepolypeptideF-serratus_M_contig14 540767..544382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929378.495841-UTR-F-serratus_M_contig14:540740..5407661622929378.495841-UTR-F-serratus_M_contig14:540740..540766Fucus serratus maleUTRF-serratus_M_contig14 540741..540766 +
1690962824.580479-UTR-F-serratus_M_contig14:540740..5407661690962824.580479-UTR-F-serratus_M_contig14:540740..540766Fucus serratus maleUTRF-serratus_M_contig14 540741..540766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929378.5156767-CDS-F-serratus_M_contig14:540766..5408081622929378.5156767-CDS-F-serratus_M_contig14:540766..540808Fucus serratus maleCDSF-serratus_M_contig14 540767..540808 +
1690962824.60408-CDS-F-serratus_M_contig14:540766..5408081690962824.60408-CDS-F-serratus_M_contig14:540766..540808Fucus serratus maleCDSF-serratus_M_contig14 540767..540808 +
1622929378.533134-CDS-F-serratus_M_contig14:541635..5417581622929378.533134-CDS-F-serratus_M_contig14:541635..541758Fucus serratus maleCDSF-serratus_M_contig14 541636..541758 +
1690962824.6174567-CDS-F-serratus_M_contig14:541635..5417581690962824.6174567-CDS-F-serratus_M_contig14:541635..541758Fucus serratus maleCDSF-serratus_M_contig14 541636..541758 +
1622929378.5531683-CDS-F-serratus_M_contig14:542877..5429751622929378.5531683-CDS-F-serratus_M_contig14:542877..542975Fucus serratus maleCDSF-serratus_M_contig14 542878..542975 +
1690962824.6281292-CDS-F-serratus_M_contig14:542877..5429751690962824.6281292-CDS-F-serratus_M_contig14:542877..542975Fucus serratus maleCDSF-serratus_M_contig14 542878..542975 +
1622929378.570043-CDS-F-serratus_M_contig14:544102..5442221622929378.570043-CDS-F-serratus_M_contig14:544102..544222Fucus serratus maleCDSF-serratus_M_contig14 544103..544222 +
1690962824.6388896-CDS-F-serratus_M_contig14:544102..5442221690962824.6388896-CDS-F-serratus_M_contig14:544102..544222Fucus serratus maleCDSF-serratus_M_contig14 544103..544222 +
1622929378.584719-CDS-F-serratus_M_contig14:544264..5443821622929378.584719-CDS-F-serratus_M_contig14:544264..544382Fucus serratus maleCDSF-serratus_M_contig14 544265..544382 +
1690962824.6484826-CDS-F-serratus_M_contig14:544264..5443821690962824.6484826-CDS-F-serratus_M_contig14:544264..544382Fucus serratus maleCDSF-serratus_M_contig14 544265..544382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig14.2887.1

>prot_F-serratus_M_contig14.2887.1 ID=prot_F-serratus_M_contig14.2887.1|Name=mRNA_F-serratus_M_contig14.2887.1|organism=Fucus serratus male|type=polypeptide|length=167bp
MFVDTVEPFLERVGGTLDKLEADQKRVEEAYRAVAVRFGENPSTTPNEAF
FELIDRMVQMIDKAAAQNRKRAEEAAALARRQARTQNRRKPKPSSNDHKT
LSNDHKTLPNDHKTLPNDHKTLPNDHETLPNDPESSSNDHQTLPNDHETL
LDEVSLQELLVQRARER
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mRNA from alignment at F-serratus_M_contig14:540741..544382+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig14.2887.1 ID=mRNA_F-serratus_M_contig14.2887.1|Name=mRNA_F-serratus_M_contig14.2887.1|organism=Fucus serratus male|type=mRNA|length=3642bp|location=Sequence derived from alignment at F-serratus_M_contig14:540741..544382+ (Fucus serratus male)
AGGAAGAGGAAGAGGAAGACGGAGACATGTTCGTGGACACGGTGGAGCCA
TTTCTAGAGCGTGTCGGGGTGAGCCATTTTTAGGGCGCACGAGTTTCCCG
ATACAGTACCTGGTTTGCAGTATACAAGAAACAGCACCGTCGTGCGGTGG
TAGCAGATCTATAATACTAGTATTAATAGTACCATAAAGGACGGAATACA
GTGTAAAGTGTATATTATTAATAGTAGATTTGTCCGCACCCTATATACCA
GACACCCGAGGCTCACACGAAACCCCTGATTTGCCATATCCCATGTTATA
CAACACCGTCAATAGTAGATACCACCCCCCTACCCCCGCCCTTTCCTCAG
GGCGCCACACACCCCTGATCGATATATACCAAACCCCATGGTAAACCCCC
ACCCCACTGTTCGAGAATGTCATACCCTGTGGAGTACTTCATCCCCATGC
AGATACCTCAACCCCTCTTGTCCTACCTCATCCTTCCGGATGATATACCG
AACCGCCAGGTAAATCAAACTCCCCGGCTCACCACCCATTGGTAAAATAT
CACACCTTGGGATAATAAACCACAACCCCCGGGTATACCACCCTCCCCCT
AGTCTTTACCAAACCCCTGGTATAACGTACACCACACATTTCTCGCCTCC
CTATTTAGTAATATTTACCTTGGAAATGATATCTGGTTTATAGCAGCACC
TCGGTGGGGGTCTTAATCGTGTTAACATGAATGTAAGTTGTTTTCGACGT
AAAACATTTTAATTTTACGAGCCTCTCCACCGTCGCCGTGTGGGTTTTGT
ATTGTAAAAAATTCTTGTCAGCCTTTTTATCGTCATAGTCGAACCATTCC
GCCCGTTGCTGGTCGGTTTCTCGAACGACGCTCCGCTTCTAAAAGGGAAC
TTTGGACAAGCTGGAGGCGGATCAAAAACGGGTCGAGGAGGCCTACAGAG
CAGTGGCCGTCAGGTTCGGAGAGAATCCCAGTACAACACCCAACGAGGCG
TTTTTTGAGCTCATCGATGTGAGTATATATCGCCGTTGTCTTGGCCTTGA
ATCAGATATGCCTATGTTTTTACTGGAACCGTGAGAGAGTTTAGACTTGA
AGAAAATCTTGCGAAACATTCAAAATGAATCCTCTCTTGGTTAGTCATAA
ATACGGAATGAAGCCTGGGCGCGGAAAGGGAGGGTCAGAGAGAAGAACGT
GCAAACGATTACGAGTTGCGATGCAATAGCCCCCCGCCTCCCATAGCCCT
CTCGTGACTGGGTCCGCCCCCCCCCCCCCTCCGCCCCCCCCTCCCCCAGA
AAACGCTAATTTCATCATATATGGTCACACGCATACATAGCAAGAGTATA
GATCAACCGGGTAAGGATGCCAATCCTGCTCGTGGAATATTTCCCTGTCC
CTGTTCACGCCTGAGAATTTGGTACCGCGAGACGGGTTGTGCAGTCCCGT
CCCGCGACAGCCTGCTCATCGCCATACTAAGGCTGAATCTGGTGCTTACT
TACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATTTGTTCTTTTATAA
CCGCCATACGCCATTGGATTAGCCCCGAGTTTGTCGGGTCACGTAATTGC
GTACTGATGGCGTTCACTGCCGAAAGTCCGCCCGCAGGGGGCCAGTAAAC
CTCAAGGTAGTTCCGAACGAGTGCTGCCATGGTAGATCACCATGGACCAA
TAATATTCGCCTTTCTTTCCAACACCCACTATTGGTATGAAGTGTGCATG
TTGAAAGTACCGGCGGTTTGTAATGCTTTGCCTGATCGATCCACTATGTC
TACTCATAGTATGCATGGTTATCACACATGGCACCTGCTCATGTCCATAC
TCAGGCTGAATATGGTGCTTACTCACGGGATTCCCCCAGAGTTCCGCGGA
GGCGTCCATTTATTTATTTTTTACATTGCAGCGACCCGAGAATGGACGCG
ACGACTCTAAGAAATGGATCAATATGGTGTGTGTGTGTGTGTGCGTGTGT
ATGTGTGTGTATTGTAGATTGTGCAACGATGATTGATGCCGCCATGATCG
CCGCCTTACCTTCGCCTTCCTATCGCCTTACCTTCGGTACCACTTGTCTG
TGCGATGGTGATTGATTGACCTGCGCCGCCGTCGCAGAGAATGGTGCAGA
TGATTGACAAGGCCGCCGCTCAGAATCGGAAGCGCGCCGAGGAAGCGGCG
GCGCTCGCGAGGCGGCAAGCTCGTACCCAAAATAGGTGTAGTAGTAGGCG
CGGGATGATTTCGCCTGTGAGTGTGTGCGAGCGCTCGATGCACGCATGTA
CCAAAATTCGTTGATAACCCCCTTAGCAATGCAGTACAGTACAATACAGT
ACCCGAGTACTACTGGATATGAGTGGATTATGATATACTGAAGTATATAT
ATATGTTTTTTAAGTTAAGATATTTTCAAATATCTCAAATTCCTAAACAA
AATTCGGTCCGACTGGCCACCCTCGATCCGACTTATTGTCAGATTATTAT
AACGATAATGGCCCCTGCAGTACGGATGCGAGATATTATTGTTTACTCCT
ATGCGGTTGGGATGGATTGGAAACGAGCGCGCAAATCAAACCTCCCTCCC
CCCGCCCCCTGAGCTCCCCGTTCCCCAGATACACGCGTGGCCAGCGGTGC
CTATGAAGGCGTGTGTACATGATGTGTGTTTAAGTTGTAGATCAAAGAAG
CAGAAAAAAGTGGGACTGTGTGTGTATCATAATGTGTGCTAAATTGCGCA
TAACCGCGCAACTCGACCCTGTCATTCAGTCATTCAGTCAATCATTCTAT
GCTACTCACATGCAGTTGGTTGACGAGTCTACGAGTCTTAAGATTGCTGA
ACTTGCATCGCGATAAAAAAATCGTAAGGCGTGAACCGGGGAGATACGGG
AATATCCTCAGTGACTGACCCACAGTATAGGCAGGATGGTAACGATAAGG
TCCATCGGCCATACTATTAATAAGTGAGATGAAAAAAATAAAAATGTCAC
CAGTACCTGGTACGTACGAGAACCTCGGATCAGACGCGACAAAGGGGGCA
TACTCTTTCTAGTGCTGTTGCTATGTACTATTAGCAGTAATCCCCAGTGT
GTGATTGGATCGCCACTCGTCACTCTCATGCGCATGCTATATTACCATAT
AGTCGACGCATACTGATTGGTTGCAGGATCCTCCCCTCCTCCCCCCCCAA
ACATGCCAGATACCTATTTTGTTCTTTTTGTTTTTAAAGAAAAATGCGAA
CGGCGCCTAAACCTTCTGATTTGTTTCGTTTTCACCGTAGTGTTTTTTGT
TATTGTTTTTGTTTCCGTGTTTCCGTGTTCTTCCTTGCGATGTTTCGTTT
CTCTTCGCGTAGAAGGAAACCGAAACCGTCGTCGAACGACCACAAGACGT
TATCGAACGACCACAAGACGTTGCCGAACGACCACAAGACGTTACCGAAC
GACCACAAGACGTTACCGAACGACCACGAGACGTTACCGAACGACCACAA
GACGTTACCGAACGACCACGAGAGGTTACCGAACGACCCGGAGTCGTCGT
CGAACGACCACCAGACGTTACCGAACGACCACGAGACGTTGTTGGACGAA
GTGAGCCTCCAGGAGCTGCTAGTACAGCGGGCGAGGGAGAGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig14:540741..544382+

>mRNA_F-serratus_M_contig14.2887.1 ID=mRNA_F-serratus_M_contig14.2887.1|Name=mRNA_F-serratus_M_contig14.2887.1|organism=Fucus serratus male|type=CDS|length=1002bp|location=Sequence derived from alignment at F-serratus_M_contig14:540741..544382+ (Fucus serratus male)
ATGTTCGTGGACACGGTGGAGCCATTTCTAGAGCGTGTCGGGATGTTCGT
GGACACGGTGGAGCCATTTCTAGAGCGTGTCGGGGGAACTTTGGACAAGC
TGGAGGCGGATCAAAAACGGGTCGAGGAGGCCTACAGAGCAGTGGCCGTC
AGGTTCGGAGAGAATCCCAGTACAACACCCAACGAGGCGTTTTTTGAGCT
CATCGATGGAACTTTGGACAAGCTGGAGGCGGATCAAAAACGGGTCGAGG
AGGCCTACAGAGCAGTGGCCGTCAGGTTCGGAGAGAATCCCAGTACAACA
CCCAACGAGGCGTTTTTTGAGCTCATCGATAGAATGGTGCAGATGATTGA
CAAGGCCGCCGCTCAGAATCGGAAGCGCGCCGAGGAAGCGGCGGCGCTCG
CGAGGCGGCAAGCTCGTACCCAAAATAGAGAATGGTGCAGATGATTGACA
AGGCCGCCGCTCAGAATCGGAAGCGCGCCGAGGAAGCGGCGGCGCTCGCG
AGGCGGCAAGCTCGTACCCAAAATAGAAGGAAACCGAAACCGTCGTCGAA
CGACCACAAGACGTTATCGAACGACCACAAGACGTTGCCGAACGACCACA
AGACGTTACCGAACGACCACAAGACGTTACCGAACGACCACGAGACAAGG
AAACCGAAACCGTCGTCGAACGACCACAAGACGTTATCGAACGACCACAA
GACGTTGCCGAACGACCACAAGACGTTACCGAACGACCACAAGACGTTAC
CGAACGACCACGAGACGTTACCGAACGACCCGGAGTCGTCGTCGAACGAC
CACCAGACGTTACCGAACGACCACGAGACGTTGTTGGACGAAGTGAGCCT
CCAGGAGCTGCTAGTACAGCGGGCGAGGGAGAGGGTTACCGAACGACCCG
GAGTCGTCGTCGAACGACCACCAGACGTTACCGAACGACCACGAGACGTT
GTTGGACGAAGTGAGCCTCCAGGAGCTGCTAGTACAGCGGGCGAGGGAGA
GG
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