mRNA_F-serratus_M_contig1396.2848.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1396.2848.1
Unique NamemRNA_F-serratus_M_contig1396.2848.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1396.2848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1396contigF-serratus_M_contig1396:1139..1668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size530
Cds size420
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.4021032-UTR-F-serratus_M_contig1396:1138..12481622929375.4021032-UTR-F-serratus_M_contig1396:1138..1248Fucus serratus maleUTRF-serratus_M_contig1396 1139..1248 +
1690962823.0231826-UTR-F-serratus_M_contig1396:1138..12481690962823.0231826-UTR-F-serratus_M_contig1396:1138..1248Fucus serratus maleUTRF-serratus_M_contig1396 1139..1248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.420389-CDS-F-serratus_M_contig1396:1248..16681622929375.420389-CDS-F-serratus_M_contig1396:1248..1668Fucus serratus maleCDSF-serratus_M_contig1396 1249..1668 +
1690962823.0320716-CDS-F-serratus_M_contig1396:1248..16681690962823.0320716-CDS-F-serratus_M_contig1396:1248..1668Fucus serratus maleCDSF-serratus_M_contig1396 1249..1668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1396.2848.1prot_F-serratus_M_contig1396.2848.1Fucus serratus malepolypeptideF-serratus_M_contig1396 1249..1668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1396.2848.1

>prot_F-serratus_M_contig1396.2848.1 ID=prot_F-serratus_M_contig1396.2848.1|Name=mRNA_F-serratus_M_contig1396.2848.1|organism=Fucus serratus male|type=polypeptide|length=140bp
MSGNISNMHNSNQKQSTPQEKHRNRNPEFFMPISQSKCSFNTTTLIHVGS
LPLSFSKAKHANRMFRMAPQEKQYCNMKIPVCSVCCTFKTGYNMDIPPPN
PMFRILTQGERGTVNCKCLLAVTAGASCKFKTGHNMNTSP
back to top

mRNA from alignment at F-serratus_M_contig1396:1139..1668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1396.2848.1 ID=mRNA_F-serratus_M_contig1396.2848.1|Name=mRNA_F-serratus_M_contig1396.2848.1|organism=Fucus serratus male|type=mRNA|length=530bp|location=Sequence derived from alignment at F-serratus_M_contig1396:1139..1668+ (Fucus serratus male)
TCACGAACACCTGTTGTTCCAGAAATATCAGGGAAAACAGAAACCAAGTC
AAAGCTCATTATTTTATTTCTCCTTCAAGTCGAACATAAACCTTCCTAAT
TTCCGAATCCATGTCAGGAAATATCAGCAACATGCATAATTCAAATCAAA
AACAATCAACCCCTCAAGAAAAACATCGCAACCGAAACCCTGAGTTCTTC
ATGCCAATTTCTCAATCCAAGTGTAGTTTCAACACAACAACATTAATTCA
TGTTGGCTCTCTACCTTTATCATTCTCAAAAGCAAAACATGCTAATCGAA
TGTTTCGGATGGCACCGCAAGAAAAACAGTACTGTAACATGAAAATACCT
GTTTGCAGTGTGTGCTGCACGTTCAAAACAGGATACAATATGGATATTCC
GCCCCCGAATCCAATGTTTCGGATACTGACGCAGGGAGAACGCGGTACTG
TAAACTGCAAATGCCTGTTAGCAGTTACCGCGGGGGCGAGCTGCAAGTTT
AAAACAGGGCACAATATGAATACTTCCCCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1396:1139..1668+

>mRNA_F-serratus_M_contig1396.2848.1 ID=mRNA_F-serratus_M_contig1396.2848.1|Name=mRNA_F-serratus_M_contig1396.2848.1|organism=Fucus serratus male|type=CDS|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig1396:1139..1668+ (Fucus serratus male)
ATGTCAGGAAATATCAGCAACATGCATAATTCAAATCAAAAACAATCAAC
CCCTCAAGAAAAACATCGCAACCGAAACCCTGAGTTCTTCATGCCAATTT
CTCAATCCAAGTGTAGTTTCAACACAACAACATTAATTCATGTTGGCTCT
CTACCTTTATCATTCTCAAAAGCAAAACATGCTAATCGAATGTTTCGGAT
GGCACCGCAAGAAAAACAGTACTGTAACATGAAAATACCTGTTTGCAGTG
TGTGCTGCACGTTCAAAACAGGATACAATATGGATATTCCGCCCCCGAAT
CCAATGTTTCGGATACTGACGCAGGGAGAACGCGGTACTGTAAACTGCAA
ATGCCTGTTAGCAGTTACCGCGGGGGCGAGCTGCAAGTTTAAAACAGGGC
ACAATATGAATACTTCCCCCATGTCAGGAAATATCAGCAACATGCATAAT
TCAAATCAAAAACAATCAACCCCTCAAGAAAAACATCGCAACCGAAACCC
TGAGTTCTTCATGCCAATTTCTCAATCCAAGTGTAGTTTCAACACAACAA
CATTAATTCATGTTGGCTCTCTACCTTTATCATTCTCAAAAGCAAAACAT
GCTAATCGAATGTTTCGGATGGCACCGCAAGAAAAACAGTACTGTAACAT
GAAAATACCTGTTTGCAGTGTGTGCTGCACGTTCAAAACAGGATACAATA
TGGATATTCCGCCCCCGAATCCAATGTTTCGGATACTGACGCAGGGAGAA
CGCGGTACTGTAAACTGCAAATGCCTGTTAGCAGTTACCGCGGGGGCGAG
CTGCAAGTTTAAAACAGGGCACAATATGAATACTTCCCCC
back to top