mRNA_F-serratus_M_contig1393.2835.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1393.2835.1
Unique NamemRNA_F-serratus_M_contig1393.2835.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1393.2835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1393contigF-serratus_M_contig1393:95535..95840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size307
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929372.9352288-CDS-F-serratus_M_contig1393:95534..958401622929372.9352288-CDS-F-serratus_M_contig1393:95534..95840Fucus serratus maleCDSF-serratus_M_contig1393 95535..95840 +
1690962821.7659876-CDS-F-serratus_M_contig1393:95534..958401690962821.7659876-CDS-F-serratus_M_contig1393:95534..95840Fucus serratus maleCDSF-serratus_M_contig1393 95535..95840 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1393.2835.1prot_F-serratus_M_contig1393.2835.1Fucus serratus malepolypeptideF-serratus_M_contig1393 95535..95840 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1393.2835.1

>prot_F-serratus_M_contig1393.2835.1 ID=prot_F-serratus_M_contig1393.2835.1|Name=mRNA_F-serratus_M_contig1393.2835.1|organism=Fucus serratus male|type=polypeptide|length=102bp
ACCLGTNRASSRRDRTAVSRCTVRPMYYFGGRRNMHESGGKFYFTSEHRT
AMSRFTARIARCLGTNRASSRRDRTAVSRPAVRPMCYFGGTGKCKWEPML
G*
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mRNA from alignment at F-serratus_M_contig1393:95535..95840+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1393.2835.1 ID=mRNA_F-serratus_M_contig1393.2835.1|Name=mRNA_F-serratus_M_contig1393.2835.1|organism=Fucus serratus male|type=mRNA|length=306bp|location=Sequence derived from alignment at F-serratus_M_contig1393:95535..95840+ (Fucus serratus male)
GCATGCTGCCTTGGAACGAATCGAGCCAGCTCCCGTCGCGACCGAACAGC
AGTGTCTCGATGCACCGTCAGACCAATGTATTACTTTGGAGGAAGAAGGA
ACATGCACGAATCAGGGGGAAAATTTTATTTCACCAGCGAGCACCGTACA
GCAATGTCTCGATTTACCGCCAGAATCGCACGCTGCCTTGGAACGAATCG
AGCCAGCTCCCGTCGCGACCGAACAGCAGTGTCTCGACCCGCCGTCAGAC
CCATGTGTTATTTTGGGGGGACTGGCAAATGTAAGTGGGAGCCCATGCTT
GGATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1393:95535..95840+

>mRNA_F-serratus_M_contig1393.2835.1 ID=mRNA_F-serratus_M_contig1393.2835.1|Name=mRNA_F-serratus_M_contig1393.2835.1|organism=Fucus serratus male|type=CDS|length=612bp|location=Sequence derived from alignment at F-serratus_M_contig1393:95535..95840+ (Fucus serratus male)
GCATGCTGCCTTGGAACGAATCGAGCCAGCTCCCGTCGCGACCGAACAGC
AGTGTCTCGATGCACCGTCAGACCAATGTATTACTTTGGAGGAAGAAGGA
ACATGCACGAATCAGGGGGAAAATTTTATTTCACCAGCGAGCACCGTACA
GCAATGTCTCGATTTACCGCCAGAATCGCACGCTGCCTTGGAACGAATCG
AGCCAGCTCCCGTCGCGACCGAACAGCAGTGTCTCGACCCGCCGTCAGAC
CCATGTGTTATTTTGGGGGGACTGGCAAATGTAAGTGGGAGCCCATGCTT
GGATGAGCATGCTGCCTTGGAACGAATCGAGCCAGCTCCCGTCGCGACCG
AACAGCAGTGTCTCGATGCACCGTCAGACCAATGTATTACTTTGGAGGAA
GAAGGAACATGCACGAATCAGGGGGAAAATTTTATTTCACCAGCGAGCAC
CGTACAGCAATGTCTCGATTTACCGCCAGAATCGCACGCTGCCTTGGAAC
GAATCGAGCCAGCTCCCGTCGCGACCGAACAGCAGTGTCTCGACCCGCCG
TCAGACCCATGTGTTATTTTGGGGGGACTGGCAAATGTAAGTGGGAGCCC
ATGCTTGGATGA
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