mRNA_F-serratus_M_contig1393.2836.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1393.2836.1 vs. uniprot
Match: D7FJS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS0_ECTSI) HSP 1 Score: 219 bits (559), Expect = 1.940e-53 Identity = 299/958 (31.21%), Postives = 385/958 (40.19%), Query Frame = 2
Query: 545 LALPDWLIIASGESSTKEAFDGAKDESAEVHVEGILTHRDKPDAVANEQEGGLGWLRAVVTSDKKVAATPSVTVMVHKSVDGSKSAQGGATSTDWLSQAAMSIADADGGHGSETKNVVRPRNYLATTGGWIPM-KLGLPV----DEENVLNGKAESDVRETEMVSKKAKKGYPGIPANDDRGPAAQPAGWLSAAISTGKLGVPADDNDDDDGQTEEDGRNLKTVSSSTQWEDGETEDRTRAPA-----LTLPPWAARWTPPSPDPP--PEVEEKPTVEALDNPKPSGLDWIKKEMPCT---PAEASKGASAGGDQVVA---NGCGITTGDSSGLDWPKEVSPHGGVSMHDTVTSPRNPHGAALSRRGGETNVVSAPSTVATTAGGSGIDWLVDAAANEKMEARVRKGREGRHPNAMTAA-------ATSGGWLTTGKLVVSTEKDSGDEKGAGGVCDSGYELSTGRKPKSGLKTRSLATIPTATGPGGWLASGVLGVPVDNESERSAQDEDGGIRGFFMVSTETQTEKDIEEVAKKGTGSKLPPRAKPWTPPPESDVTGDPVPPRDKDSKKQDITVAVTPDWIIASLGRSDDDAPAETATSGGVDSEGKGLDWLAKAVDPASRSVQDTQ---GLPPEAAGSNASDWLLQIVVXXXXXXXXERLKKKSIQPG---TSVAPNALSWMTKMKHRSSVDLEDSSVEALVVETKTKAGPGGWMQSGALGAPDSIEEEKALEEARAASSISRPSNKACSSD---ATSDRRPSLSDGAPAWTPKQLTETGADESRESWRGSRXXXXXXXXXXXXXXQQ-------EKAPVLVDAAPATSRRXXXXXXXXXXXXVPVVA--TEAFSRLSLSGDIPPRKPKSLAGLVGNTRAPSTHGDTRQVGCNSEKQHAQQLALPDWLTIAAGEFSTKEAFDGARDESSEAHVEGIMMHRDDSKADDREGGLGWL 3289
+ + DWL A+ + S E + RD+ D A+ GL WL S K AA + S G S++G A DWL+ A S G + V RP A GGW+ KLGLP D++ V + + K RG + ++G ++ R V+ TQ +D + E TR A LPPWA + PP P P P+ + T+E + +P+G + + PA+ + G ++ + G G +G + GL W E + DT AT A S DWL DA + +H + TAA A GGW+++GKL VST D DE AG D G KP+ K S ++ A GP GWL+SG LGVP +ES+ D DGG M +TETQTE++IEE K G KLP +Q+ TPDWI+ASLG + A A A G S G DWL VQ+ Q G GSN DWL Q + +PG + + LSWMT MK RSS+DL D VE + + K K PGGW+Q GALGAPD++EE ALEEARAASS++R S + AT RRPSL G P W PK T A S S RG XXXXXXXXXXXX QQ E+ D +P XXXXXXXXXXX VA ++ SR G + + G E + A ALPDWLT AAG S + G E+ ++ DD GGLGWL
Sbjct: 1178 VRVSDWLAAAATTGTA----------SGEESTNALGEERDQQDGEASGGSDGLSWLTQAADSHKPSAAASGI-----PSTAGVDSSEGDA-GADWLAVAKSS------GQAKRSPAVKRPSVGAAAPGGWMSSGKLGLPAGDGSDDDQAGKTSGSGGVAKAKXXXKA-------------RGSVSGTXXXXXXXXXXXXXXXXXXXXXXEEGSGGDNDRRGAAVTIETQTDD-DIEAATRGAAERGSTRKLPPWAKPYVPPDPIPEVVPDTAAELTIEKQEL-EPAGSGGVPSWLAAVAGAPADEKHSDALGQERALEADEGGVGQASGGNDGLGWLTEAA------SKDTAA--------------------------ATPASTSVPDWLGDATSRGMT----------KHNKSSTAAKRASIKSAAPGGWMSSGKLGVSTGDDGSDEDQAG-KTDRGSA-----KPRKKKKQPSRGSVSAAGGPAGWLSSGALGVPAQDESDEDGGDSDGGRP--LMATTETQTEENIEEATKTANGPKLPXXXXXXXXXXXXXXXXXXX--XXXXXXEQEHDTPATPDWILASLGPDAEGAAAAPAPGG---SPG---DWL----------VQENQAGGGPTGTGGGSNGPDWLQQATAAPTAKPANRSRGAATQRPGGGRKAATQSPLSWMTSMKRRSSMDLNDQGVEEAIAQAKAKTIPGGWLQMGALGAPDAVEEANALEEARAASSLTRTSTNGKGTPGAAATDVRRPSLEQGLPPWAPKLATTALASSS--SSRGRXXXXXXXXXXXXXQHQQGGGSPSAEQLKARADESPXXXXXXXXXXXXXXXXADKKVAAGSDGSSRRRXXXXXXXXXXXXXXAAPGGSPTSRSRGQEEDELPVPESEQATP-ALPDWLTAAAGGGSAPKDTRG----DGESTID----------TDDDGGGLGWL 2013
BLAST of mRNA_F-serratus_M_contig1393.2836.1 vs. uniprot
Match: A0A6H5KKG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG6_9PHAE) HSP 1 Score: 183 bits (465), Expect = 1.940e-43 Identity = 140/360 (38.89%), Postives = 173/360 (48.06%), Query Frame = 2
Query: 1628 ATTAGGSGIDWLVDAAANEKMEARVRKGREGRHPNAMTAAATSGGWLTTGKLVVSTEKDSGDEKGAGGVCDSGYELSTGRKPKSGLKTRSLATIPTATGPGGWLASGVLGVPVDNESERSAQDEDGGIRGFFMVSTETQTEKDIEEVAKKGTGSKLPPRAKPWTPPPESDVTGDPVPPRDKDSKKQDITVAVTPDWIIASLGRSDDDAPAETATSGGVDSEGKGLDWLAKAVDPASRSVQDTQ---GLPPEAAGSNASDWLLQIVVXXXXXXXXERLKKKSIQPG---TSVAPNALSWMTKMKHRSSVDLEDSSVEALVVETKTKAGPGGWMQSGALGAPDSIEEEKALEEARAASSISR 2689
AT A S DWL A + + R R A +A GGW+++GKL ++T DS DE AG D G +K K + ++P A GP GWL+SG LGVP ES+ + D DGG M +TETQTE +IE K G KLPP AKPWTP P TPDWI+ASL + A A A G S G DW VQ+ Q G GS DWL Q + +PG + A + LSWM+ MK RSS+DL D VE + + K K PGGW+Q GALGAPD++EE ALEEARAASS++R
Sbjct: 514 ATPASSSAPDWLAGAKSRGTTKHNKRSTAAKR---ASIGSAAPGGWMSSGKLGLATGDDSSDEDQAG-KTDRGSAKPRMKKKKQ----QRRGSVPAAGGPAGWLSSGALGVPAQYESDENGGDSDGGRP--LMATTETQTEDNIEAATKTANGPKLPPWAKPWTPXPPXXXXXXXX--XXXXXXXXXXXXPGTPDWILASLDPDTEGAAAAPAPGG---SPG---DW----------HVQENQAGGGPAGTGGGSTGPDWLQQATAASTGKPANRWRGAATQRPGGGRKAAAQSPLSWMSSMKRRSSMDLNDQGVEEAIAQAKAKTIPGGWLQIGALGAPDAVEEANALEEARAASSLTR 845
BLAST of mRNA_F-serratus_M_contig1393.2836.1 vs. uniprot
Match: A0A6H5KVL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL2_9PHAE) HSP 1 Score: 155 bits (392), Expect = 3.280e-34 Identity = 128/396 (32.32%), Postives = 179/396 (45.20%), Query Frame = 2
Query: 1634 TAGGSGIDWLVDAAA-------------------------NEKMEARVRKGREGRHPNAMTAAATS--------GGWLTTGKLVVSTEKDSGDEKGAGGVCDSGYELSTGRKPKSGLKTRSLATIPTATGPGGWLASGVLGVPVDNESERSAQDEDGGIRGFFMVSTETQTEKDIEEVAKKGTGSKLPPRAKPWTPPPESDVTGDPVPPRDKDS------KKQDITVAVTPDWIIASLGRSDDDAPAETATSGGVDSEGKGL-DWLAKAVDPASRSVQDTQGLPPEAAGSNASDWLLQIVVXXXXXXXXERL----KKKSIQPGTSVAPNALSWMTKMKHRSSVDLEDSSVEALVVETKTKAGPGGWMQSGALGAPDSIEEEKALEEARAASSISR 2689
+AGG G+ WL AA N+ + G+ R P+A AA GGWL++GKL VSTE+++ + D+G PK K +++ +P A GG +V+ ETQTE DIE V ++G KLPP AKP+ PPP+ DV VP DS +K++ + PDWI+A+LG D D GGV + G G +WL+ A + + P +NA DWL Q + ++ I +V + LSWM ++K RSS+DL+D +VE V + K KA PGGW+Q GALGAPD++ EE LE+ARAAS +R
Sbjct: 711 SAGGGGLSWLTQAAGSSTSGAAAPIDKPSAAVVXXXXXXVNDWLAVAKSSGQTKRKPHATATAAAKAAAVPAAPGGWLSSGKLGVSTEEENDQD-------DAGKTAGRSTTPKK-KKKQAIGAVPVAXX---XXXXXXXXXXXXXXXXXXXXXXGGGDGQPILVTMETQTEDDIEGVTERGNVPKLPPWAKPYVPPPKDDV----VPESTADSXXXKTPEKEETDASAAPDWILAALGDQDADG-----FRGGVPASGGGSKNWLSHAAEQEPGAGASDM---PNTGDTNAPDWLQQAAAPSAKPKDRQAASIPQQRSGIARKAAVPASPLSWMKQVKRRSSMDLDDPTVETTVAQAKAKAAPGGWLQIGALGAPDALAEENELEQARAASPRTR 1083 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1393.2836.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1393.2836.1 >prot_F-serratus_M_contig1393.2836.1 ID=prot_F-serratus_M_contig1393.2836.1|Name=mRNA_F-serratus_M_contig1393.2836.1|organism=Fucus serratus male|type=polypeptide|length=1859bp MQQQEEAPVLVDAAPATRGRSSLDGGMPSWSLVRPSNKACSSDATSDRCPback to top mRNA from alignment at F-serratus_M_contig1393:117869..133901- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1393.2836.1 ID=mRNA_F-serratus_M_contig1393.2836.1|Name=mRNA_F-serratus_M_contig1393.2836.1|organism=Fucus serratus male|type=mRNA|length=16033bp|location=Sequence derived from alignment at F-serratus_M_contig1393:117869..133901- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1393:117869..133901- >mRNA_F-serratus_M_contig1393.2836.1 ID=mRNA_F-serratus_M_contig1393.2836.1|Name=mRNA_F-serratus_M_contig1393.2836.1|organism=Fucus serratus male|type=CDS|length=11154bp|location=Sequence derived from alignment at F-serratus_M_contig1393:117869..133901- (Fucus serratus male)back to top |