mRNA_F-serratus_M_contig139.2815.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig139.2815.1
Unique NamemRNA_F-serratus_M_contig139.2815.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig139.2815.1 vs. uniprot
Match: D7FRA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA1_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 7.460e-6
Identity = 54/152 (35.53%), Postives = 68/152 (44.74%), Query Frame = 1 
Query:   22 YPRTFASFLQCLKKIRTFDIAEESHDEDLQEQPHWGSISGGIDESRGWLRSWGPSPGPECCDDHEHGHDNDNGGVHAWEDGEGDPYDPFDTYDMAAYSSG---TERSSDAEDSQTHIPYNYGDSTRLPISHPDHSLGPGLGPASGTDNDTRE 468
            YPRT+  F + L +    D  E S      +QPH   ++   D    W R   P+ G E  D  E+ HD+D                   TYD+   S+     E  S+A  S   I     D+TRLPISHPDHSLG GLGP S  D D R+
Sbjct:  572 YPRTYGCFKKSLDEALDNDGDETSRG-GASQQPHRSLVA---DNGHSWFR---PAWGDELDDASEY-HDDD-------------------TYDLDRSSTEEVFVEEDSEASKSDAAIT----DTTRLPISHPDHSLGAGLGPPSERDGDERQ 692
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig139.2815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRA1_ECTSI7.460e-635.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig139contigF-serratus_M_contig139:569513..571928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.2
Seed ortholog evalue5.2e-07
Seed eggNOG ortholog2880.D7FRA1
KEGG koko:K20409
KEGG Pathwayko04150,map04150
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of TOR signaling
EggNOG OGsCOG2319@1,KOG0309@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size501
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig139.2815.1prot_F-serratus_M_contig139.2815.1Fucus serratus malepolypeptideF-serratus_M_contig139 569513..571928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.315643-CDS-F-serratus_M_contig139:569512..5696591622929369.315643-CDS-F-serratus_M_contig139:569512..569659Fucus serratus maleCDSF-serratus_M_contig139 569513..569659 -
1690962819.928128-CDS-F-serratus_M_contig139:569512..5696591690962819.928128-CDS-F-serratus_M_contig139:569512..569659Fucus serratus maleCDSF-serratus_M_contig139 569513..569659 -
1622929369.3304598-CDS-F-serratus_M_contig139:570181..5703651622929369.3304598-CDS-F-serratus_M_contig139:570181..570365Fucus serratus maleCDSF-serratus_M_contig139 570182..570365 -
1690962819.9421566-CDS-F-serratus_M_contig139:570181..5703651690962819.9421566-CDS-F-serratus_M_contig139:570181..570365Fucus serratus maleCDSF-serratus_M_contig139 570182..570365 -
1622929369.3455763-CDS-F-serratus_M_contig139:571758..5719281622929369.3455763-CDS-F-serratus_M_contig139:571758..571928Fucus serratus maleCDSF-serratus_M_contig139 571759..571928 -
1690962819.9547138-CDS-F-serratus_M_contig139:571758..5719281690962819.9547138-CDS-F-serratus_M_contig139:571758..571928Fucus serratus maleCDSF-serratus_M_contig139 571759..571928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig139.2815.1

>prot_F-serratus_M_contig139.2815.1 ID=prot_F-serratus_M_contig139.2815.1|Name=mRNA_F-serratus_M_contig139.2815.1|organism=Fucus serratus male|type=polypeptide|length=167bp
QVSSASAYPRTFASFLQCLKKIRTFDIAEESHDEDLQEQPHWGSISGGID
ESRGWLRSWGPSPGPECCDDHEHGHDNDNGGVHAWEDGEGDPYDPFDTYD
MAAYSSGTERSSDAEDSQTHIPYNYGDSTRLPISHPDHSLGPGLGPASGT
DNDTREDNGTEDSTAVV
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mRNA from alignment at F-serratus_M_contig139:569513..571928-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig139.2815.1 ID=mRNA_F-serratus_M_contig139.2815.1|Name=mRNA_F-serratus_M_contig139.2815.1|organism=Fucus serratus male|type=mRNA|length=2416bp|location=Sequence derived from alignment at F-serratus_M_contig139:569513..571928- (Fucus serratus male)
CAGGTATCTTCTGCGTCTGCCTACCCGCGTACTTTTGCCAGCTTCTTGCA
GTGCCTGAAGAAGATTCGTACGTTTGACATCGCCGAGGAGAGTCACGACG
AGGACCTCCAAGAACAACCACACTGGGGAAGTATATCCGGTGGAATAGAC
GAAAGCCGGGGCTGGTTGAGGTACGCTGGCGTCCTACGTGTTTAAATGTT
GCCTACTTCAAACTGCTGCAACCGAAACACTTACCTGTGCATACCTGGTA
AAATGTACGGGAGTAAAATATAGTACCGTTGAATCGATTCATCAAATAGT
TATTAAGGTTGACATTTTTGCCCTCAGCTAGATGCGGCCATGTCGAGTCA
AAAGATTTGCTCCTGGAGAGGCTTTTGTAGCAACGTTGGCAATTATTCAG
CCGTCGAGGCTTTAAAGAGGCTTTGGTACAGCTAGTCCTTGTAATAGAAA
CCAACGTCTGGACGTCACAAGACTCGCCATCGCCGGTTGCTCGGTTCAAT
GATAAACCTGAAACAAAACAAATATACGCACCACAAAACTACATACGCTA
CATTATACTAAACTACATACGCTACAGTACACTACACTGCATAAGCTACA
GTACAAATAAATTAGACTACATACGCTAAACTATATACCACAATACATAC
GCTACTGTACACTACTCTACATTACACTACATTACATTACACTATAATAT
ATACGATACTACACGAAAGTGCTGACTATACATACTATATACACTAAACT
GCTCTATTTCAATACAGTTCAGATAGACTACTGTAGTTGGTAAAAGTGTA
ACGCCCTATCTCGTACTTGTATATTTTTATTTTGACAAAAAAAAGGAAAT
ATTACCACTTCTTATGCTGTTAGAAAATGTTATCAGAAAACGCCATTTCT
GATATGGAACCAAAAATCCGCTTCTTACGTCATCAGAAAAGGCCTTTTCT
AGTAAGACATTTTCTGACCAAATTTTCTGATAACCCCATCCTGTTAGAAA
ATCCTGATTTTCTAACAGGATGCACTTATTAAAAAACTTTATTAGAAAAT
AGTTTGAATTCCCAACGGCTGCCAAGTTGCAGCGGTGACAGTCGCGATGG
GAGCATATCGACGCCGCAAGCAGAAAATACAGTACGAAATAACAATCAGT
TGGCACTCGTTCTGGGGTTACTCGACGAGGAAGACGCAGTCGTGTCCCGA
GAAAATATATGTGTGTAGCCTTTGCAGCGTGCGTTGTGCAACATTTCTTT
CCTCCTCGGTACAGATTATTAGATGCTGTTTTATATGACGTTTGATGCTG
TTGTTGGAGGTCGCTTGCACAGCAGCAGTACTGGTTGCATGGAATATTGC
GGCCTTCGAGCTGCATTCGTGTGGCTGGACAAGCCCCAAACGATTGAAGT
ATGTTGTAGAGAGTTAGTTGTATTTGTACTCACTCTCCCGTCACCTTGCG
CGATTGCAGATAGAACTGATGGAATATGTATCGCTGGAGTGGTCGATTCC
TCTCAGCCTTACTAAATCAGGATCATACTATAATAATACGTAATCATTAT
CTCGTCCGAGCAGATCGTGGGGACCTTCCCCTGGGCCGGAGTGCTGCGAC
GATCACGAACACGGTCACGATAATGATAACGGTGGTGTCCACGCCTGGGA
AGACGGAGAAGGCGACCCTTACGACCCGTTCGACACTTACGACATGGCAG
CATACAGCTCTGGGACGGAACGGTCAAGTGACGCCGAGGATAGCCAGGTA
CGTAGTAGGTTTGACCTGTACCTTTGACCTTTGACCTGTACTTTTGACCT
ATAGACCTGTGCTTGTTTATGTTTAATCATCACACGCTACTGTAATGCCA
CTCTGCATTGCCACATTGCCACTCTTTGCATTAATTAATTAATTAATTAA
TTATACTCTAACGATACAGGTCATTGCATTCATTGCATTCATTTCATCCA
TTGCATTCATTGCATCGTGGTATGTCTGTATTTCTGTCTATTTTCCAACT
GTTTTAGACCTATTGCTATTGGAGGTAAAACGTAAAATGTAAAGGTAAAG
CGCCGCGCGTCGTTGCGACCTCAACACACTAGTTACTAGTTAAAAGTTAC
TAGTCACTACCGTAGTCACTATTAATAGTCACCAGTCAGTATAAATACTC
AGTAGTCATTCGTCAGTAATAACAGGAGTCACTCAGTCGCCATTCAAGCA
AAGTCATGACGCCGCATGCTGGCCTCTTTCGGCGTACTGTACTGTTATGA
ATACTGTAATGTATACCAGACTCATATTCCCTACAACTACGGCGATAGCA
CGCGGTTGCCCATCAGTCATCCGGACCATAGCCTGGGGCCAGGCCTCGGC
CCGGCCTCGGGTACGGACAACGATACCCGAGAAGATAATGGCACAGAAGA
CAGCACCGCTGTCGTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig139:569513..571928-

>mRNA_F-serratus_M_contig139.2815.1 ID=mRNA_F-serratus_M_contig139.2815.1|Name=mRNA_F-serratus_M_contig139.2815.1|organism=Fucus serratus male|type=CDS|length=1002bp|location=Sequence derived from alignment at F-serratus_M_contig139:569513..571928- (Fucus serratus male)
CAGGTATCTTCTGCGTCTGCCTACCCGCGTACTTTTGCCAGCTTCTTGCA
GTGCCTGAAGAAGATTCGTACGTTTGACATCGCCGAGGAGAGTCACGACG
AGGACCTCCAAGAACAACCACACTGGGGAAGTATATCCGGTGGAATAGAC
GAAAGCCGGGGCTGGTTGAGCAGGTATCTTCTGCGTCTGCCTACCCGCGT
ACTTTTGCCAGCTTCTTGCAGTGCCTGAAGAAGATTCGTACGTTTGACAT
CGCCGAGGAGAGTCACGACGAGGACCTCCAAGAACAACCACACTGGGGAA
GTATATCCGGTGGAATAGACGAAAGCCGGGGCTGGTTGAGATCGTGGGGA
CCTTCCCCTGGGCCGGAGTGCTGCGACGATCACGAACACGGTCACGATAA
TGATAACGGTGGTGTCCACGCCTGGGAAGACGGAGAAGGCGACCCTTACG
ACCCGTTCGACACTTACGACATGGCAGCATACAGCTCTGGGACGGAACGG
TCAAGTGACGCCGAGGATAGCCAGATCGTGGGGACCTTCCCCTGGGCCGG
AGTGCTGCGACGATCACGAACACGGTCACGATAATGATAACGGTGGTGTC
CACGCCTGGGAAGACGGAGAAGGCGACCCTTACGACCCGTTCGACACTTA
CGACATGGCAGCATACAGCTCTGGGACGGAACGGTCAAGTGACGCCGAGG
ATAGCCAGACTCATATTCCCTACAACTACGGCGATAGCACGCGGTTGCCC
ATCAGTCATCCGGACCATAGCCTGGGGCCAGGCCTCGGCCCGGCCTCGGG
TACGGACAACGATACCCGAGAAGATAATGGCACAGAAGACAGCACCGCTG
TCGTTACTCATATTCCCTACAACTACGGCGATAGCACGCGGTTGCCCATC
AGTCATCCGGACCATAGCCTGGGGCCAGGCCTCGGCCCGGCCTCGGGTAC
GGACAACGATACCCGAGAAGATAATGGCACAGAAGACAGCACCGCTGTCG
TT
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