mRNA_F-serratus_M_contig137.2722.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig137.2722.1 vs. uniprot
Match: D8LH60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH60_ECTSI) HSP 1 Score: 273 bits (697), Expect = 1.700e-80 Identity = 158/277 (57.04%), Postives = 182/277 (65.70%), Query Frame = 3
Query: 18 SLGLQRGFWRRSSFLNDRSTAMGTFAAHPRHTDSHGINSRRITSLGDEQPSKGHGKNVFDVFWDRPQQQYWLGSRTARAILMEDFYAGAP-PLHESDKQPFRQHLRTDHLGQATRIPEACGSSQVPPPSPPPLPQPQVVAEGAVSTMAAPRSPYITSGEEPILGDLLLDFLHLFGEDFDAAREGFSVRGGGFRFRCHDKPPHPQAGDPIVIEDPLNCMNNVGRSSYCIGQVQRAFFEALTTLKAAMVRVNQDGKEVLASGTINSSLKGNTGLLRHIC 845
S+ QR FW+ SSF+ R + A+ +R +L +++ ++ G WDRP+QQYWLGSRTARA LM+DFYAGAP P + K + +R + Q S VPPP PPLP+P V E A M AP SPYI SGEEP+LG+LLLDFLHLFGEDFD REGFSVRGGGFRF HD PPHPQA DPIVIEDPLNCMNNVGRSS+ IGQVQR FFEA TTLKA VRVNQDG+EVL S T NTG+LRHIC
Sbjct: 612 SVSRQR-FWQPSSFVESRWGRTLSMAS----------GARAANALNEQEKTQASGGGRISS-WDRPRQQYWLGSRTARATLMQDFYAGAPAPAPPASKL---EQVRDSSIIQ----------SSVPPP--PPLPEP--VVETASHPMMAPMSPYIMSGEEPVLGELLLDFLHLFGEDFDMGREGFSVRGGGFRFCVHDHPPHPQASDPIVIEDPLNCMNNVGRSSFGIGQVQRIFFEARTTLKATTVRVNQDGREVLGSDT------HNTGILRHIC 853
BLAST of mRNA_F-serratus_M_contig137.2722.1 vs. uniprot
Match: A0A6H5KSB0_9PHAE (PAP-associated domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSB0_9PHAE) HSP 1 Score: 211 bits (537), Expect = 5.090e-64 Identity = 116/174 (66.67%), Postives = 127/174 (72.99%), Query Frame = 3
Query: 261 MEDFYAGAP-PLHESDKQPFRQHLRTDHLGQATRIPEACGSSQVPPPSPPPLPQPQVVAEGAVSTMAAPRSPYITSGEEPILGDLLLDFLHLFGEDFDAAREGFSVRGGGFRFRCHDKPPHPQAGDPIVIEDPLNCMNNVGRSSYCIGQVQRAFFEALTTLKAAMVRVNQDGKE 779
M+DFYAGAP P + K + +R + Q S VPPP PPLP+P V E A M AP SPYI SGEEP+LG+LLLDFLHLFGEDFD REGFSVRGGGFRF HD PPHPQA DPIVIEDPLNCMNNVGRSS+ IGQVQR FFE LTTLKA +VRVNQDG+E
Sbjct: 1 MQDFYAGAPAPAPPASKL---EQVRDSSIIQ----------SSVPPP--PPLPEP--VVETASHPMMAPMSPYIMSGEEPVLGELLLDFLHLFGEDFDMGREGFSVRGGGFRFCVHDHPPHPQASDPIVIEDPLNCMNNVGRSSFGIGQVQRIFFEVLTTLKATIVRVNQDGRE 157
BLAST of mRNA_F-serratus_M_contig137.2722.1 vs. uniprot
Match: A0A7S2SK54_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SK54_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.540e-18 Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 3
Query: 501 LGDLLLDFLHLFGEDFDAAREGFSVRGGGFRFRCHDKPPHPQAGDPIVIEDPLNCMNNVGRSSYCIGQVQRAFFEALTTLKAAMVR 758
LG+LL+DFL +G +F A EGFSVR GGFRF PHPQA DP+VIEDP+N + NVGR+ Y Q+QR F A + L+ ++R
Sbjct: 593 LGELLVDFLRFWGSEFKAGDEGFSVRHGGFRFSLFGTLPHPQASDPVVIEDPINVITNVGRTCYKFTQLQRLFASAHSRLRDGLLR 678
BLAST of mRNA_F-serratus_M_contig137.2722.1 vs. uniprot
Match: A0A7S2SJ60_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJ60_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.910e-18 Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 3
Query: 501 LGDLLLDFLHLFGEDFDAAREGFSVRGGGFRFRCHDKPPHPQAGDPIVIEDPLNCMNNVGRSSYCIGQVQRAFFEALTTLKAAMVR 758
LG+LL+DFL +G +F A EGFSVR GGFRF PHPQA DP+VIEDP+N + NVGR+ Y Q+QR F A + L+ ++R
Sbjct: 896 LGELLVDFLRFWGSEFKAGDEGFSVRHGGFRFSLFGTLPHPQASDPVVIEDPINVITNVGRTCYKFTQLQRLFASAHSRLRDGLLR 981
BLAST of mRNA_F-serratus_M_contig137.2722.1 vs. uniprot
Match: UPI001D080094 (non-canonical poly(A) RNA polymerase protein Trf4-1-like isoform X1 n=4 Tax=Coccinellini TaxID=263631 RepID=UPI001D080094) HSP 1 Score: 62.0 bits (149), Expect = 7.700e-7 Identity = 42/107 (39.25%), Postives = 55/107 (51.40%), Query Frame = 3
Query: 462 PRSPYITSGEEPILGDLLLDFLHLFGEDFDAAREGFSVRGGGFRFRCHDKPPHPQAG---DPIVIEDPLNCMNNVGRSSYCIGQVQRAFFEALTTLKAAMVRVNQDG 773
PR Y+ +G LG LL++F LFG F+ + G +R GG D G + IEDPL N++GRSSY I QV+RAF A + L AM +Q G
Sbjct: 291 PRPDYLKNGN---LGVLLIEFFELFGRKFNYMKTGIRIRDGGQYINKEDMQKEMIDGYRPSLLCIEDPLLPSNDIGRSSYGILQVKRAFEYAYSVLTNAMHPFSQFG 394
BLAST of mRNA_F-serratus_M_contig137.2722.1 vs. uniprot
Match: A0A8J4XMZ1_CHIOP (Non-canonical poly(A) RNA polymerase protein Trf4-1 n=2 Tax=Chionoecetes opilio TaxID=41210 RepID=A0A8J4XMZ1_CHIOP) HSP 1 Score: 57.4 bits (137), Expect = 1.910e-6 Identity = 34/95 (35.79%), Postives = 51/95 (53.68%), Query Frame = 3
Query: 477 ITSGEEPILGDLLLDFLHLFGEDFDAAREGFSVRGGGFRFRCHDKP---PHPQAGDPIVIEDPLNCMNNVGRSSYCIGQVQRAFFEALTTLKAAM 752
++ ++ LG +++ F + +G F + G SV GG R D P P P+ I+DPL N+VGRSSY I VQ+AF A + L+ A+
Sbjct: 10 VSEEDQQDLGRVVVRFFNFYGHVFPYTK-GISVLKGGRYLRIEDVPTEMPGNHRRSPLCIQDPLTLSNDVGRSSYRIWDVQKAFQHAFSVLRLAL 103
BLAST of mRNA_F-serratus_M_contig137.2722.1 vs. uniprot
Match: A0A7S2LG55_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LG55_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 8.380e-6 Identity = 40/110 (36.36%), Postives = 55/110 (50.00%), Query Frame = 3
Query: 474 YITSGEEPILGDLLLDFLHLFGEDFDAAREGFSVRGGGFRFRCH--DKPPH---PQAGDPIVIEDPLNCMNNVGRSSYCIGQVQRAFFEALTTLKAAMVRVNQDGKEVLA 788
Y SG+ LG LLLDFL L+G DF+ G SVR G+ F DK + P I +E+PL+ +VG +Y I + R F A TL A + ++ +LA
Sbjct: 400 YGGSGQHFNLGSLLLDFLELYGLDFNYVTTGISVRHDGYYFPKGQLDKKEYFWQPNRPSSIAVENPLDPTMDVGAGAYRIQMISRVFDHAFKTLLAYVSEPMEETDSILA 509
BLAST of mRNA_F-serratus_M_contig137.2722.1 vs. uniprot
Match: UPI001E2794F7 (terminal nucleotidyltransferase 4B-like isoform X2 n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E2794F7) HSP 1 Score: 58.5 bits (140), Expect = 8.890e-6 Identity = 39/100 (39.00%), Postives = 51/100 (51.00%), Query Frame = 3
Query: 462 PRSPYITSGEEPILGDLLLDFLHLFGEDFDAAREGFSVRGGGFRFRCHDKPPHPQAG---DPIVIEDPLNCMNNVGRSSYCIGQVQRAFFEALTTLKAAM 752
PR Y+ G LG LL++F LFG F+ + G +R GG D G + IEDPL N++GRSSY I QV+RAF A + L A+
Sbjct: 217 PRPDYLKHGN---LGVLLIEFFELFGRKFNYMKTGIRIRDGGKYINKEDMQKEMIDGYRPSLLCIEDPLLPSNDIGRSSYGILQVKRAFEYAYSVLTNAV 313
BLAST of mRNA_F-serratus_M_contig137.2722.1 vs. uniprot
Match: F1LEU4_ASCSU (DNA polymerase sigma n=1 Tax=Ascaris suum TaxID=6253 RepID=F1LEU4_ASCSU) HSP 1 Score: 55.5 bits (132), Expect = 2.310e-5 Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = 3
Query: 501 LGDLLLDFLHLFGEDFDAAREGFSVRGGGFRFRCHD----KPPHPQAGDPIVIEDPLNCMNNVGRSSYCIGQVQRAFFEALTTLKAAMVR 758
+G LLL+FL L+G++F+ + +RGGG + C + + P + + IEDPL N++GR S+ I V++AF AL TL A +R
Sbjct: 1 MGMLLLNFLQLYGQEFNYMKTALRIRGGG-AYVCKEEMLTRMSRP-SNSMLCIEDPLQPGNDIGRCSHNILFVRQAFEHALCTLCAVFIR 88
BLAST of mRNA_F-serratus_M_contig137.2722.1 vs. uniprot
Match: UPI001F07F5E6 (terminal nucleotidyltransferase 4A-like isoform X1 n=2 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F07F5E6) HSP 1 Score: 56.6 bits (135), Expect = 4.930e-5 Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = 3
Query: 501 LGDLLLDFLHLFGEDFDAAREGFSVRGGGFRFRCHDKPPHPQAGDP---IVIEDPLNCMNNVGRSSYCIGQVQRAFFEALTTLKAAM 752
LG LL++FL L+G DF+ R G V+ GG D G+ + IEDPL N+VGRSSY + QV++ F A L A+
Sbjct: 401 LGILLIEFLELYGRDFNYLRTGIRVKNGGAYLAKDDMVKSMTNGNRPSMLCIEDPLQPGNDVGRSSYGVLQVKQVFDYAYMVLSHAV 487 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig137.2722.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig137.2722.1 >prot_F-serratus_M_contig137.2722.1 ID=prot_F-serratus_M_contig137.2722.1|Name=mRNA_F-serratus_M_contig137.2722.1|organism=Fucus serratus male|type=polypeptide|length=262bp MGTFAAHPRHTDSHGINSRRITSLGDEQPSKGHGKNVFDVFWDRPQQQYWback to top mRNA from alignment at F-serratus_M_contig137:511497..514042+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig137.2722.1 ID=mRNA_F-serratus_M_contig137.2722.1|Name=mRNA_F-serratus_M_contig137.2722.1|organism=Fucus serratus male|type=mRNA|length=2546bp|location=Sequence derived from alignment at F-serratus_M_contig137:511497..514042+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig137:511497..514042+ >mRNA_F-serratus_M_contig137.2722.1 ID=mRNA_F-serratus_M_contig137.2722.1|Name=mRNA_F-serratus_M_contig137.2722.1|organism=Fucus serratus male|type=CDS|length=1572bp|location=Sequence derived from alignment at F-serratus_M_contig137:511497..514042+ (Fucus serratus male)back to top |