mRNA_F-serratus_M_contig137.2707.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig137.2707.1
Unique NamemRNA_F-serratus_M_contig137.2707.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig137.2707.1 vs. uniprot
Match: D8LH73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH73_ECTSI)

HSP 1 Score: 721 bits (1860), Expect = 4.960e-251
Identity = 367/468 (78.42%), Postives = 415/468 (88.68%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSIAGKPVSMEDLLQLARESVMKKFLVLDTNVVLNQMDLLENPSPALSCVVILQTVMQEARHNNLSLLRRLKQLLKDDSRVFVFFANEHHSQTFPEEIQGESPNDRNDRAIRFATSWFAEQLGETAAVTLLTNDRANLALAKEAKISAMTIHSYVESVQGQYPDLAELLAPETPVEADQRGESSINSGNTSVRRRGIQRVLLFEEHKPMSELKDGIRQGRYFQGALRAERNSSNRCYVVAQGMQDDERIAVYIRGAQCINRAVDGDIVAFEILPEAEWCTQSDKADVPTSKGGA-TGGEGDLKDTRPDNSLVPELTAQPPIEDQEKTRKLVGAGTKQPFGRVVGIIRRHWRDKKYCGSLRKEGDRVVASGKGQTTSALFMPVDKRMPYVRIQTRQRELLRNKRIIVALDAWPAWCKHPLGHYVKTLGDVGSKATETE 1401
            MHR++AFFKKTRKGKILRVVSDHYLRDDIGCGS+AGKPVS ++L+QLA+ESVMK+FLVLDTNVVLNQMDLLENPSPALSCVV+LQTVMQEARHNNLSL RRLKQLLKDDSRVFVFFANEHH +TFPEEI+GESPNDRNDRAIR ATSWF++Q G++ AV LLTNDRANL+LA++AKISAMTIH+YVESV+GQYPDLAELLAPE    A    ES  N GN   RR G QRVLLFEEHKPMSEL  GIRQGRYFQGALRAER+SSNRCYVVAQGMQD ERIAVYIRGAQCINRAVDGDIVAFE+LPEAEW +Q D +   T +    TGGE ++ D RP  +LVP+ TAQP IE+ EKT+ L GAGT+QP GRVVGIIRR+WR+K+YCGSLR EGDR VASGKGQ+TSALFMPVD+++P+VRIQTRQR++L  KRI+VA+D+WPAWCK+PLGHYVKTLG+ G+KATETE
Sbjct:    1 MHRNRAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSNDNLVQLAQESVMKRFLVLDTNVVLNQMDLLENPSPALSCVVVLQTVMQEARHNNLSLFRRLKQLLKDDSRVFVFFANEHHCETFPEEIKGESPNDRNDRAIRIATSWFSKQFGDSIAVVLLTNDRANLSLAQDAKISAMTIHAYVESVRGQYPDLAELLAPEESSAAGDVSES--NRGNPPQRRTGGQRVLLFEEHKPMSELTAGIRQGRYFQGALRAERSSSNRCYVVAQGMQDKERIAVYIRGAQCINRAVDGDIVAFELLPEAEWYSQGDTSGGATKEEKTPTGGEMEIPDNRPTENLVPDPTAQPAIEEIEKTKTLEGAGTRQPCGRVVGIIRRNWREKQYCGSLRVEGDRAVASGKGQSTSALFMPVDRKIPWVRIQTRQRDVLSTKRILVAMDSWPAWCKYPLGHYVKTLGEKGAKATETE 466
[Close]
BLAST of mRNA_F-serratus_M_contig137.2707.1 vs. uniprot
Match: A0A6H5KXF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXF0_9PHAE)

HSP 1 Score: 703 bits (1815), Expect = 2.920e-248
Identity = 359/467 (76.87%), Postives = 407/467 (87.15%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSIAGKPVSMEDLLQLARESVMKKFLVLDTNVVLNQMDLLENPSPALSCVVILQTVMQEARHNNLSLLRRLKQLLKDDSRVFVFFANEHHSQTFPEEIQGESPNDRNDRAIRFATSWFAEQLGETAAVTLLTNDRANLALAKEAKISAMTIHSYVESVQGQYPDLAELLAPETPVEADQRGESSINSGNTSVRRRGIQRVLLFEEHKPMSELKDGIRQGRYFQGALRAERNSSNRCYVVAQGMQDDERIAVYIRGAQCINRAVDGDIVAFEILPEAEWCTQSDKADVPTSKGGATGGEGDLKDTRPDNSLVPELTAQPPIEDQEKTRKLVGAGTKQPFGRVVGIIRRHWRDKKYCGSLRKEGDRVVASGKGQTTSALFMPVDKRMPYVRIQTRQRELLRNKRIIVALDAWPAWCKHPLGHYVKTLGDVGSKATETE 1401
            MHR++AFFKKTRKGKILRVVSDHYLRDDIGCGS+AGKPVS ++L+QLA+ESVMK+FLVLDTNVVLNQMDLLENPSPALSCV++LQTVM+EARHNNLSL RRLK LLKDDSRVFVFFANEHH +TFPEEI+GESPNDRNDRAIR ATSWF+EQLG++ AV LLTNDR NL+LA++AKISAMTIH+YVESV+GQYPDLAELLAPE         ESS  +     +R G QRVLLFEEHKPMSEL  GIRQGRYFQGALRAER+SSNRCYVVAQGMQD ERIAVYIRGAQCINRAVDGDIVAFE+LPEAEWC+Q              GGE  + D RP  +LVPE TAQP IE+ EKT+KL GA T++P GRVVGIIRR+WR+K+YCGSLR EGDR VASGKGQ+TSALFMPVD+++P+VRIQTRQR++L  KRI+VA+D+WPAWCK+PLGHYVKTLG+ G+KATETE
Sbjct:    1 MHRNRAFFKKTRKGKILRVVSDHYLRDDIGCGSLAGKPVSNDNLVQLAQESVMKRFLVLDTNVVLNQMDLLENPSPALSCVIVLQTVMEEARHNNLSLFRRLKHLLKDDSRVFVFFANEHHCETFPEEIKGESPNDRNDRAIRIATSWFSEQLGDSIAVVLLTNDRGNLSLAQDAKISAMTIHAYVESVRGQYPDLAELLAPE---------ESS--AAGDPTQRTGGQRVLLFEEHKPMSELTAGIRQGRYFQGALRAERSSSNRCYVVAQGMQDKERIAVYIRGAQCINRAVDGDIVAFELLPEAEWCSQ--------------GGEMGIPDNRPTENLVPEPTAQPAIEEIEKTKKLEGAETRRPCGRVVGIIRRNWREKQYCGSLRVEGDRAVASGKGQSTSALFMPVDRKIPWVRIQTRQRDVLSTKRILVAMDSWPAWCKYPLGHYVKTLGEKGAKATETE 442
[Close]
BLAST of mRNA_F-serratus_M_contig137.2707.1 vs. uniprot
Match: A0A835Z1U7_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1U7_9STRA)

HSP 1 Score: 384 bits (986), Expect = 3.160e-118
Identity = 257/683 (37.63%), Postives = 334/683 (48.90%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSIAGKPVSMEDLLQLARESVMKKFLVLDTNVVLNQMDLLENPSPALSCVVILQTVMQE-------------------------------------------------------------ARHNNLSLLRRLKQLLKDDSRVFVFFANEHHSQ-------------------------------------------------------------TFPEEIQGESPNDRNDRAIRFATSWFAEQLGE----TAAVTLLTNDRANLALAKEAKISAMTIHSYVESVQGQYPDLAELLAPETPVEADQRGESSINSGNTSVRR------------------------------------------RGIQRVL---LFEEHKPMSELKDGIRQGR---------------------------YFQGALRAERNSSNRCYVVAQGMQDDERIAVYIRGAQCINRAVDGDIVAFEILPEAEWCTQSDKADVPTSKGGATGGEG------DLKDTRPDNSLVPELTAQPPIEDQEKTRKLVGAGTKQPFGRVVGIIRRHWRDKKYCGSLRKEGDRVVASGKGQTTSALFMPVDKR------------MPYVRIQTRQRELLRNKRIIVALDAWPAWCKHPLGHYVKTLGDVGSKATETE 1401
            MHR+KAFFK+TR+GK+L +V+DHYLRDDI CG++AGK ++ +D+ +LA ES MK+ LVLDTNVVLNQMDLL+   PALSCVV+LQTV +                                                               RHNNL+L RRL+QLL D+SRVF+FFANEHH +                                                              + E   GESPNDRNDRAIR +  W   Q+ +       V LLTNDRAN  +A  A I+AM+IH ++  V  +YPDL +LLA E  V+A+  G + +N+                                                  G +RV    L+  H PMSEL  GI+ GR                            FQG LR ER++   CYV+ QG+Q+ ERIAVY+RG + +NRAVDGD+VA E+LP  EW       D P  +G    G        D +D+    +LVP++TA   +ED E T K+  A   +P GRVVG+IRR+WR  +YCGSL   GDR  A+G+  T+SAL +PVD++            +P VRIQTRQR  L  KRIIV++D+WPA C+ PLGHY++TLG  G K+TETE
Sbjct:    1 MHRNKAFFKRTRRGKVLHIVNDHYLRDDIACGTLAGKELTAQDMARLASESAMKQLLVLDTNVVLNQMDLLDRGGPALSCVVVLQTVAEXXXXXXXXXXXXXXTWMYVLXXXXXXXXXXXXXXXXXXEMDLLXXXXXXXXXXXXXXXXXXXVRHNNLALYRRLRQLLMDESRVFIFFANEHHCEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLMDEXXXXXXXXXXXXXDAYTEHRPGESPNDRNDRAIRVSAQWLKRQVDDGGEGDVGVVLLTNDRANRRIALGADITAMSIHKFIRDVSDKYPDLQDLLAAEA-VDAEVEGGNDLNARRXXXXXXXXXXXXXXGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXNVTEGGERVAAKPLYPPHLPMSELTAGIKSGRGKXXXXXXXXXXXXXXXXXXXXXXXXRLFQGTLRVERSNWTECYVIVQGLQEQERIAVYVRGPEHVNRAVDGDVVAIEMLPPQEWTD-----DRPGKQGAKENGTSAAATPADQEDSEEQKNLVPDITAPQAVEDLEGTVKV--AANARPRGRVVGVIRRNWR--QYCGSLEAHGDRETANGR--TSSALLVPVDRKSPKVPSQMLFGNIPKVRIQTRQRSALEGKRIIVSIDSWPANCRFPLGHYLRTLGSSGDKSTETE 671
[Close]
BLAST of mRNA_F-serratus_M_contig137.2707.1 vs. uniprot
Match: A0A7S2B4Y1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B4Y1_9STRA)

HSP 1 Score: 334 bits (857), Expect = 1.740e-101
Identity = 208/481 (43.24%), Postives = 290/481 (60.29%), Query Frame = 1 
Query:   19 FFKKTRKG-KILRVVSDHYLRDDIGCGSIAGKPVSMEDLLQLARESVM--KK---------FLVLDTNVVLNQMDLLENPS-PALSCVVILQTVMQEARHNNLSLLRRLKQLLKDDSRVFVFFANEHHSQTFPEEIQGESPNDRNDRAIRFATSWFAEQLGETAAVTLLTNDRANLALAKEAKISAMTIHSYVESVQGQYPDLAELLAPETPVEADQRGESSINSGNTSVRRRGIQRVLLFEEHKPMSELKDGIRQGRYFQGALRAERNSSNRCYVVAQGMQDDERIAVYIRGAQCINRAVDGDIVAFEILP---EAEWCTQSDKADVPTSKGGATGGEGDLKDTRPDNSLVPELTAQPPIEDQE--KTRKLVGAGTKQPFGRVVGIIRRHWRDKKYCGSLRKE-GDRVVASG-KGQTTSALFMPVDKRMPYVRIQTRQRELLRNKRIIVALDAWPAWCKHPLGHYVKTLGDVGSKATETE 1401
            F+++ +KG ++ R+V + Y+R D+G GS  G+ +   DL++L +   +  KK         +LV DTNVVL+QMDLLEN   P+L  ++IL+TV+QE RHNNLSL RRLK+LLK  +R  VF +NEH+S TF +    ESPNDRNDRAIR A +W+ +Q   +A V +L+NDR NL  AK+  IS  T+ ++VE++   YP L++L+                 + NT    +   R L ++EH PMS+L+ G++ GR+FQG +R +R  +  CYVV    +  ER+++ I GA+ +NRAVDGDIVA +IL    EA+     +   V +S      G G           VPE TA P + D E  K     G G K   GRVVGIIRR+W  + YCG+L  +  DR++    +G   S L +P +KR+P VRIQTRQR+ L  KRI+ A+D+WPA  K P GHYV T+G+ G KA ETE
Sbjct:   18 FYRRAKKGHRVTRIVEEQYIRKDLGFGSWQGRTLQKMDLVELLKNDKVGSKKQEPKAPDVMWLVPDTNVVLHQMDLLENSGCPSLDHIIILETVLQEVRHNNLSLFRRLKELLKHSTRRIVFLSNEHYSATFVQRKPEESPNDRNDRAIRIAAAWYIKQAEGSAPVLMLSNDRDNLRKAKKQGISCETVEAFVETLATAYPQLSDLV-----------------NRNTDTAAKAGTRELFYDEHLPMSQLQQGVKAGRFFQGTVRCDRWDT--CYVVISDKKTGERVSITISGAENVNRAVDGDIVAIKILDAAAEAKAAASEEALPVSSSSKEEEDGAG-----------VPEPTAPPRVGDMEGAKVETTKGGGAKT--GRVVGIIRRNWF-RHYCGALAGDKDDRLLGEPVRGGNRSVLIIPAEKRLPRVRIQTRQRDNLVGKRILFAIDSWPASSKLPNGHYVSTIGNSGDKAIETE 465
[Close]
BLAST of mRNA_F-serratus_M_contig137.2707.1 vs. uniprot
Match: A0A7S3QK89_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QK89_DUNTE)

HSP 1 Score: 328 bits (840), Expect = 5.100e-99
Identity = 199/473 (42.07%), Postives = 279/473 (58.99%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSIAGKPVSMEDLLQLARESVMKK-FLVLDTNVVLNQMDLLENPSPALSCVVILQTVMQEARHNNLSLLRRLKQLLKDDSRVFVFFANEHHSQTFPEEIQGESPNDRNDRAIRFATSWFAEQLGETAAVTLLTNDRANLALAKEAKISAMTIHSYVESVQGQYPDLAELLAPETPVEADQRGESSINSGNTSVRRRGIQRVLLFEEHKPMSELKDGIRQGRYFQGALRAERNSSNRCYVVAQGMQDDERIAVYIRGAQCINRAVDGDIVAFEILPEAEWCTQSDKADVPTSKGGATGGEGDLKDTRPDNSLV-----PELTAQPPIEDQEKTRKLVGAGTKQPFGRVVGIIRRHWRDKKYCGSLRKEGDRVVASGKGQTTSALFMPVDKRMPYVRIQTRQRELLRNKRIIVALDAWPAWCKHPLGHYVKTLGDVGSKATETE 1401
            MH +  F KKT+KG+I +VV +HYLRDDI  G+    P+  E      + S     +LV+DTN+ L+Q+D LE+P  A++ VV+   V++E RH N +  +RL+ L   D++ F  FANEHH +TF +   GESPNDRNDRAIR AT W+A++L     V LLTND  +  LA+E  + A+   SYV  ++    +L +++A  T VE D   E     G  SVR    +R  ++EEHK  SE++ GIR+GR+ QGALR  R +    YV +  +  D    + + G   +NRA+DGDIVA E+LPE+EW   S +       GG  GG  D ++   +   V     PE+    P ++     +  G   KQP GRVVGII R WR + YCGSL+       A      ++ LF+PV++R P +RIQTRQ + L +KR++VA+D+WP+   HPLGHYV+TLG +G K TETE
Sbjct:    1 MHHNNQFVKKTKKGQIRKVVREHYLRDDIWSGT----PLDEECEASAHKLSASASHYLVIDTNIALHQLDFLEHP--AITDVVVCSVVLEEVRHKNNAAYQRLRALCASDAKRFYVFANEHHRETFIKGEAGESPNDRNDRAIRVATKWYADRLAGRMEVILLTNDAGSRRLAEEEGVRAIGAASYVRLLRPDATELLDMVAAGTVVEEDPEEED----GGASVR--ATKRKRVYEEHKTFSEVQAGIREGRFHQGALRVNRYNPYEGYVGSDSVGQD----ILLAGRSYMNRAMDGDIVAVELLPESEWRGPSSRLPGQGKAGG--GGIDDAEEEGNEEEDVGAGAAPEVFQVGPTDEPPAPAQKAGDEAKQPTGRVVGIISRSWRSRGYCGSLKPPS--AHARPLHGASNVLFLPVERRYPAIRIQTRQADSLMDKRLVVAIDSWPSDSTHPLGHYVRTLGTIGDKDTETE 453
[Close]
BLAST of mRNA_F-serratus_M_contig137.2707.1 vs. uniprot
Match: A0A446TMI2_TRITD (PINc domain-containing protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A446TMI2_TRITD)

HSP 1 Score: 313 bits (802), Expect = 4.610e-98
Identity = 196/471 (41.61%), Postives = 273/471 (57.96%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSIAGKPVSMEDLLQLARESVMKKFLVLDTNVVLNQMDLLENPSPALSCVVILQTVMQEARHNNLSLLRRLKQLLKDDSRVFVFFANEHHSQTFPEEIQGESPNDRNDRAIRFATSWFAEQLGETAAVTLLTNDRANLALAKEAKISAMTIHSYVESVQGQYPDLAELLAPETPVEADQRGESSINSGNTSVRRRGIQRVLLFEEHKPMSELKDGIRQGRYFQGALRAERNSSNRCYVVAQGMQDDERIAVYIRGAQCINRAVDGDIVAFEILPEAEWCTQSDKADVPTSKGGATGGEGDLKDTRPDNSLVPELTAQPPIEDQEKTRKLVGAGT----KQPFGRVVGIIRRHWRDKKYCGSLRKEGDRVVASGKGQTTSALFMPVDKRMPYVRIQTRQRELLRNKRIIVALDAWPAWCKHPLGHYVKTLGDVGSKATETE 1401
            M +SK+F KKT++G++++VV +HYLRDDI CG+ +    S  D       +     LV+DTNVVL+Q+DLLENP  A+  VV+L  V+ E ++ NLS+  RLK L  + +R F  F NEHH  T+ +E+ GESPNDRNDRAIR A  W+   LG++A V L+TNDR N   A E  ++A T+ SYV S+    P L +L+    P   D   E   +        R  +R +++ EHKPMSE+  G+R G Y QG LR  R +    YV ++ + D+    + IRG+  +NR+ DGDIVA E+LP+ +W     K+ +          + D  D   D  LVP      P  +    +  VG+       +P GRVVGII+R+W    YCGSL       + +G G    ALF+  D+R+P +RIQTRQ   L NKRIIVA+D+W    ++P GHYV+T+GD+G K TETE
Sbjct:    1 MLQSKSFVKKTKQGRVVKVVREHYLRDDIPCGAFS---CSSCDAAARRLNADAAAILVVDTNVVLHQIDLLENP--AIEDVVVLSVVLDEVKNKNLSVYNRLKTLCTNTARRFFVFTNEHHRDTYVKEMVGESPNDRNDRAIRVAARWYQSHLGDSAKVLLVTNDRDNKRKATEEGLNAETVESYVRSLA--QPGLLDLVV--VPSSGDVAMEDVEDL-------RPSKRKIVYNEHKPMSEITSGLRCGIYHQGKLRVNRYNPFEAYVGSESIGDE----IIIRGSSNMNRSFDGDIVAVELLPQDQW--HDSKSFIA---------DDDEDDNEDDVRLVPNSADDAP-RNTNSMQSTVGSSAASVPSRPVGRVVGIIKRNWNS--YCGSLEPM---PMPAGSGGVAHALFVSKDRRIPKIRIQTRQLGNLLNKRIIVAVDSWDVMSRYPSGHYVRTIGDIGDKETETE 434
[Close]
BLAST of mRNA_F-serratus_M_contig137.2707.1 vs. uniprot
Match: A0A0N7KGI5_ORYSJ (Os03g0129200 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0N7KGI5_ORYSJ)

HSP 1 Score: 306 bits (785), Expect = 1.680e-96
Identity = 192/472 (40.68%), Postives = 265/472 (56.14%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSIAGKPV-SMEDLLQLARESVMKKFLVLDTNVVLNQMDLLENPSPALSCVVILQTVMQEARHNNLSLLRRLKQLLKDDSRVFVFFANEHHSQTFPEEIQGESPNDRNDRAIRFATSWFAEQLGETAAVTLLTNDRANLALAKEAKISAMTIHSYVESVQGQYPDLAELLAPETPVEADQRGESSINSGNTSVRRRGIQRVLLFEEHKPMSELKDGIRQGRYFQGALRAERNSSNRCYVVAQGMQDDERIAVYIRGAQCINRAVDGDIVAFEILPEAEWCTQSDKADVPTSKGGATGGEGDLKDTRPDNSLVPELTAQPPIE---DQEKTRKLVGAGTKQPFGRVVGIIRRHWRDKKYCGSLRKEGDRVVASGKGQTTSALFMPVDKRMPYVRIQTRQRELLRNKRIIVALDAWPAWCKHPLGHYVKTLGDVGSKATETEA 1404
            M +SK F KKTR G++ +VV +HYLRDDI CG+ +     ++E  L     ++    LV+DTNVVL+Q+DLLENP  A+  VV+L  V+ E ++ NL++  R+K L  + +R F  F NEHH  T+ +E+ GESPNDRNDRAIR AT W+   LGE   V L+TNDR N   A E  I+A T+ SYV S+    P L +L+   T  +        +      V         ++ EHKPMSE+  G+R G Y QG LR  R +    YV ++ + D+    + I G   +NRA DGDIVA E+LP+ +W     K+ +            D +D   D  L P      P +    Q        + + +P GRVVGII+R+W    YCGSL       + +G G    ALF+  D+R+P +RIQTRQ   L +KRIIVA+D+W    ++P GHYV+T+GD+G K TETEA
Sbjct:    1 MLQSKTFVKKTRAGRVQKVVREHYLRDDISCGAASCSTCGAVEHPLSADAAAI----LVVDTNVVLHQIDLLENP--AIDDVVLLSVVLDEVKNKNLAVFNRIKALCSNKARRFFVFTNEHHRDTYVKEMVGESPNDRNDRAIRVATRWYQSHLGENVKVLLITNDRDNKRKAIEEGINAETVESYVRSLA--QPGLLDLVVVSTSGDVTMEDVEDLRPSKKKV---------IYSEHKPMSEITAGLRCGIYHQGKLRVNRYNPFEAYVGSESIGDE----IVIHGRSNMNRAFDGDIVAVELLPQDQW--HESKSFIAD----------DDEDDEEDVHLAPNSADDAPRKANPTQSTAASSADSVSSRPVGRVVGIIKRNWNS--YCGSLEPM---PMPAGSGGVAHALFVSKDRRIPKIRIQTRQLGNLLDKRIIVAVDSWDVLSRYPSGHYVRTIGDIGDKDTETEA 434
[Close]
BLAST of mRNA_F-serratus_M_contig137.2707.1 vs. uniprot
Match: A0A1D6JMF8_MAIZE (Exosome complex exonuclease RRP44 homolog A n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6JMF8_MAIZE)

HSP 1 Score: 305 bits (781), Expect = 1.070e-94
Identity = 195/477 (40.88%), Postives = 275/477 (57.65%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSI--AGKPVSMEDLLQLARESVMKKFLVLDTNVVLNQMDLLENPSPALSCVVILQTVMQEARHNNLSLLRRLKQLLKDDSRVFVFFANEHHSQTFPEEIQGESPNDRNDRAIRFATSWFAEQLGETAAVTLLTNDRANLALAKEAKISAMTIHSYVESVQGQYPDLAELLAPETPVEADQRGESSINSGNTSVR----RRGIQRVLLFEEHKPMSELKDGIRQGRYFQGALRAERNSSNRCYVVAQGMQDDERIAVYIRGAQCINRAVDGDIVAFEILPEAEWCTQSDKADVPTSKGGATGGEGDLKDTRPDNSLVPELTAQPPIEDQEKTRKLVGAG----TKQPFGRVVGIIRRHWRDKKYCGSLRKEGDRVVASGKGQTTSALFMPVDKRMPYVRIQTRQRELLRNKRIIVALDAWPAWCKHPLGHYVKTLGDVGSKATETE 1401
            M +SK+F KKT++G+I +VV +HYLRDDI CG +       + E  L  A  ++    LV+DTNVVL+Q+DLLENP  A+  VV+L  V+ E ++ NLS+  R+K L  + +R F  FANE H  T+ +++ GES NDRNDRAIR A  W+   LGE+  V L+TNDR N   A E  ++A T+ SYV S+    P L +L+   T             SG+ S+      R  ++ +++ EHKPMSE+  G+R G Y QG LR  R +    YV ++ + D+    + IRG   +NRA DGDIVA E+LP+ +W     K+ +            D      D  LVP      P  +   T+  VG+     + +P GRV+GII+R+W    YCGSL+      + +G G    ALF+  D+R+P +RIQTRQ E L NKRI+VA+D+W    ++P GHYV+T+GD+G K TETE
Sbjct:    1 MLQSKSFVKKTKQGRIQKVVREHYLRDDIYCGFVPCTACAAAAERKLGAAAAAI----LVVDTNVVLHQIDLLENP--AIEDVVLLSVVLDEVKNKNLSVFNRIKALCINKARRFYVFANEQHRDTYVKDMVGESSNDRNDRAIRVAARWYQSHLGESVKVLLITNDRDNKRKAIEEGLNAETVESYVRSLA--QPGLLDLVVVPT-------------SGDVSMEDVDDHRPSKKKVIYNEHKPMSEITSGLRCGIYHQGKLRVNRYNPFEAYVGSESIGDE----IVIRGRSNMNRAFDGDIVAVELLPQDQW--HESKSFIAD----------DXXXXXXDVHLVPNSADDAP-RNTNSTQSTVGSSAPSISSRPVGRVMGIIKRNWNS--YCGSLQPM---PMPAGSGGVAHALFVSKDRRVPKIRIQTRQLENLVNKRIVVAVDSWDVLSRYPSGHYVRTIGDIGDKETETE 434
[Close]
BLAST of mRNA_F-serratus_M_contig137.2707.1 vs. uniprot
Match: A0A3B6KR61_WHEAT (Uncharacterized protein n=13 Tax=Pooideae TaxID=147368 RepID=A0A3B6KR61_WHEAT)

HSP 1 Score: 313 bits (802), Expect = 6.920e-94
Identity = 196/471 (41.61%), Postives = 273/471 (57.96%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSIAGKPVSMEDLLQLARESVMKKFLVLDTNVVLNQMDLLENPSPALSCVVILQTVMQEARHNNLSLLRRLKQLLKDDSRVFVFFANEHHSQTFPEEIQGESPNDRNDRAIRFATSWFAEQLGETAAVTLLTNDRANLALAKEAKISAMTIHSYVESVQGQYPDLAELLAPETPVEADQRGESSINSGNTSVRRRGIQRVLLFEEHKPMSELKDGIRQGRYFQGALRAERNSSNRCYVVAQGMQDDERIAVYIRGAQCINRAVDGDIVAFEILPEAEWCTQSDKADVPTSKGGATGGEGDLKDTRPDNSLVPELTAQPPIEDQEKTRKLVGAGT----KQPFGRVVGIIRRHWRDKKYCGSLRKEGDRVVASGKGQTTSALFMPVDKRMPYVRIQTRQRELLRNKRIIVALDAWPAWCKHPLGHYVKTLGDVGSKATETE 1401
            M +SK+F KKT++G++++VV +HYLRDDI CG+ +    S  D       +     LV+DTNVVL+Q+DLLENP  A+  VV+L  V+ E ++ NLS+  RLK L  + +R F  F NEHH  T+ +E+ GESPNDRNDRAIR A  W+   LG++A V L+TNDR N   A E  ++A T+ SYV S+    P L +L+    P   D   E   +        R  +R +++ EHKPMSE+  G+R G Y QG LR  R +    YV ++ + D+    + IRG+  +NR+ DGDIVA E+LP+ +W     K+ +          + D  D   D  LVP      P  +    +  VG+       +P GRVVGII+R+W    YCGSL       + +G G    ALF+  D+R+P +RIQTRQ   L NKRIIVA+D+W    ++P GHYV+T+GD+G K TETE
Sbjct:    1 MLQSKSFVKKTKQGRVVKVVREHYLRDDIPCGAFS---CSSCDAAARRLNADAAAILVVDTNVVLHQIDLLENP--AIEDVVVLSVVLDEVKNKNLSVYNRLKTLCTNTARRFFVFTNEHHRDTYVKEMVGESPNDRNDRAIRVAARWYQSHLGDSAKVLLVTNDRDNKRKATEEGLNAETVESYVRSLA--QPGLLDLVV--VPSSGDVAMEDVEDL-------RPSKRKIVYNEHKPMSEITSGLRCGIYHQGKLRVNRYNPFEAYVGSESIGDE----IIIRGSSNMNRSFDGDIVAVELLPQDQW--HDSKSFIA---------DDDEDDNEDDVRLVPNSADDAP-RNTNSMQSTVGSSAASVPSRPVGRVVGIIKRNWNS--YCGSLEPM---PMPAGSGGVAHALFVSKDRRIPKIRIQTRQLGNLLNKRIIVAVDSWDVMSRYPSGHYVRTIGDIGDKETETE 434
[Close]
BLAST of mRNA_F-serratus_M_contig137.2707.1 vs. uniprot
Match: A0A2P6V9Z5_9CHLO (Glutathione peroxidase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V9Z5_9CHLO)

HSP 1 Score: 312 bits (800), Expect = 3.460e-92
Identity = 193/470 (41.06%), Postives = 279/470 (59.36%), Query Frame = 1 
Query:    1 MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSIAGKPVSMEDLLQLARESVMKKFLVLDTNVVLNQMDLLENPSPALSCVVILQTVMQEARHNNLSLLRRLKQLLKDDSRVFVFFANEHHSQTFPEEIQGESPNDRNDRAIRFATSWFAEQLGETAAVTLLTNDRANLALAKEAKISAMTIHSYVESVQGQYPDLAELLAPETPVEADQRGESSINSGNTSVRRRGIQRVLLFEEHKPMSELKDGIRQGRYFQGALRAERNSSNRCYVVAQGMQDDERIAVYIRGAQCINRAVDGDIVAFEILPEAEWCTQSDKADVPTSKGG--ATGGEGDLKDTRPDNSLVPELTAQPPIEDQEKTRKLVGAGTKQPFGRVVGIIRRHWRDKKYCGSLRKEGDRVVASGKGQ-TTSALFMPVDKRMPYVRIQTRQRELLRNKRIIVALDAWPAWCKHPLGHYVKTLGDVGSKATETE 1401
            M +SK+F KKT+KGK+L+VV +HYLRDDI  GS    P   +D  +L+ E+   ++LV+DTNV L+QMD+LE+ S  +S VVI   V++E +  N S   RL+ L  ++++ F  FANEHH  T+ ++  GESPNDRNDRAIR A +W+A +L     V LLT+D  +   A +  + A++  +Y     G+ P+L +L+A     EA               + R  +R  ++EEH+PMS++  GI+ GRY QG LR  R +    +V ++ +  D    + I G   +NRA++GD+VA E+LPE  W   S+K     + GG  A   EGD  +  PD + + ++    P E   +     G   K+P G+VVG+IRR+WR + YCGSL+      +  G G  T S LFMPV++R PY+RI TRQ   L +KRI+VA+D+W A   +P GHYV+TLG +G K TETE
Sbjct:    1 MLQSKSFVKKTKKGKVLKVVREHYLRDDIYSGSPLD-PECPDDQWRLSGEAA--QYLVIDTNVALHQMDVLEHAS--VSDVVIPGVVLEEVKARNASTYARLRGLAANEAKRFFVFANEHHRDTYVKQEPGESPNDRNDRAIRVAAAWYAARLPGHK-VVLLTDDADSRRKAGDMGVEALSCAAYARQRAGEAPELQDLVAAAREAEAX---XXXXXXXXXXXKGRAAKRQRVYEEHRPMSDITAGIKTGRYHQGTLRVNRFNGFEGWVGSESVGQD----ILISGRVDMNRAMEGDVVAVELLPEELWKGASNKLPSGAAAGGDAAPELEGDEAEAAPDGAHIAQVD---PGEHYGEDAAAAGGSGKRPTGKVVGVIRRNWRTRGYCGSLQPPKPGALGRGSGNHTESHLFMPVERRFPYIRIHTRQAGTLADKRIVVAIDSWEADSLYPSGHYVRTLGAIGDKETETE 454
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig137.2707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH73_ECTSI4.960e-25178.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXF0_9PHAE2.920e-24876.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1U7_9STRA3.160e-11837.63RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2B4Y1_9STRA1.740e-10143.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3QK89_DUNTE5.100e-9942.07Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A446TMI2_TRITD4.610e-9841.61PINc domain-containing protein n=5 Tax=Triticinae ... [more]
A0A0N7KGI5_ORYSJ1.680e-9640.68Os03g0129200 protein n=1 Tax=Oryza sativa subsp. j... [more]
A0A1D6JMF8_MAIZE1.070e-9440.88Exosome complex exonuclease RRP44 homolog A n=2 Ta... [more]
A0A3B6KR61_WHEAT6.920e-9441.61Uncharacterized protein n=13 Tax=Pooideae TaxID=14... [more]
A0A2P6V9Z5_9CHLO3.460e-9241.06Glutathione peroxidase n=1 Tax=Micractinium conduc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig137contigF-serratus_M_contig137:152953..157875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score726.1
Seed ortholog evalue1.1e-206
Seed eggNOG ortholog2880.D8LH73
Preferred nameDIS3
KEGG koko:K12585
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000278,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000465,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000790,GO:0000956,GO:0000966,GO:0000967,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004527,GO:0004532,GO:0004540,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007049,GO:0008104,GO:0008150,GO:0008152,GO:0008408,GO:0008536,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016075,GO:0016078,GO:0016604,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0016973,GO:0017016,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019899,GO:0022613,GO:0030847,GO:0031123,GO:0031125,GO:0031126,GO:0031267,GO:0031323,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0033621,GO:0034399,GO:0034427,GO:0034470,GO:0034471,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0042886,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051607,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071034,GO:0071035,GO:0071038,GO:0071039,GO:0071042,GO:0071043,GO:0071046,GO:0071047,GO:0071051,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0090503,GO:0097159,GO:0097659,GO:0098542,GO:0098772,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1903311,GO:1905354,GO:1990251
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Exons9
Model size1405
Cds size1404
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929349.2705872-CDS-F-serratus_M_contig137:152952..1530751622929349.2705872-CDS-F-serratus_M_contig137:152952..153075Fucus serratus maleCDSF-serratus_M_contig137 152953..153075 +
1690962810.3878484-CDS-F-serratus_M_contig137:152952..1530751690962810.3878484-CDS-F-serratus_M_contig137:152952..153075Fucus serratus maleCDSF-serratus_M_contig137 152953..153075 +
1622929349.29128-CDS-F-serratus_M_contig137:155325..1553731622929349.29128-CDS-F-serratus_M_contig137:155325..155373Fucus serratus maleCDSF-serratus_M_contig137 155326..155373 +
1690962810.4004467-CDS-F-serratus_M_contig137:155325..1553731690962810.4004467-CDS-F-serratus_M_contig137:155325..155373Fucus serratus maleCDSF-serratus_M_contig137 155326..155373 +
1622929349.3089912-CDS-F-serratus_M_contig137:155582..1556781622929349.3089912-CDS-F-serratus_M_contig137:155582..155678Fucus serratus maleCDSF-serratus_M_contig137 155583..155678 +
1690962810.411724-CDS-F-serratus_M_contig137:155582..1556781690962810.411724-CDS-F-serratus_M_contig137:155582..155678Fucus serratus maleCDSF-serratus_M_contig137 155583..155678 +
1622929349.3233154-CDS-F-serratus_M_contig137:155928..1561041622929349.3233154-CDS-F-serratus_M_contig137:155928..156104Fucus serratus maleCDSF-serratus_M_contig137 155929..156104 +
1690962810.4204795-CDS-F-serratus_M_contig137:155928..1561041690962810.4204795-CDS-F-serratus_M_contig137:155928..156104Fucus serratus maleCDSF-serratus_M_contig137 155929..156104 +
1622929349.3406484-CDS-F-serratus_M_contig137:156252..1565611622929349.3406484-CDS-F-serratus_M_contig137:156252..156561Fucus serratus maleCDSF-serratus_M_contig137 156253..156561 +
1690962810.4297123-CDS-F-serratus_M_contig137:156252..1565611690962810.4297123-CDS-F-serratus_M_contig137:156252..156561Fucus serratus maleCDSF-serratus_M_contig137 156253..156561 +
1622929349.355732-CDS-F-serratus_M_contig137:156693..1567661622929349.355732-CDS-F-serratus_M_contig137:156693..156766Fucus serratus maleCDSF-serratus_M_contig137 156694..156766 +
1690962810.4391263-CDS-F-serratus_M_contig137:156693..1567661690962810.4391263-CDS-F-serratus_M_contig137:156693..156766Fucus serratus maleCDSF-serratus_M_contig137 156694..156766 +
1622929349.380241-CDS-F-serratus_M_contig137:156983..1571241622929349.380241-CDS-F-serratus_M_contig137:156983..157124Fucus serratus maleCDSF-serratus_M_contig137 156984..157124 +
1690962810.4483-CDS-F-serratus_M_contig137:156983..1571241690962810.4483-CDS-F-serratus_M_contig137:156983..157124Fucus serratus maleCDSF-serratus_M_contig137 156984..157124 +
1622929349.3928373-CDS-F-serratus_M_contig137:157234..1575131622929349.3928373-CDS-F-serratus_M_contig137:157234..157513Fucus serratus maleCDSF-serratus_M_contig137 157235..157513 +
1690962810.4574556-CDS-F-serratus_M_contig137:157234..1575131690962810.4574556-CDS-F-serratus_M_contig137:157234..157513Fucus serratus maleCDSF-serratus_M_contig137 157235..157513 +
1622929349.4069612-CDS-F-serratus_M_contig137:157716..1578751622929349.4069612-CDS-F-serratus_M_contig137:157716..157875Fucus serratus maleCDSF-serratus_M_contig137 157717..157875 +
1690962810.4671078-CDS-F-serratus_M_contig137:157716..1578751690962810.4671078-CDS-F-serratus_M_contig137:157716..157875Fucus serratus maleCDSF-serratus_M_contig137 157717..157875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig137.2707.1prot_F-serratus_M_contig137.2707.1Fucus serratus malepolypeptideF-serratus_M_contig137 152953..157875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig137.2707.1

>prot_F-serratus_M_contig137.2707.1 ID=prot_F-serratus_M_contig137.2707.1|Name=mRNA_F-serratus_M_contig137.2707.1|organism=Fucus serratus male|type=polypeptide|length=468bp
MHRSKAFFKKTRKGKILRVVSDHYLRDDIGCGSIAGKPVSMEDLLQLARE
SVMKKFLVLDTNVVLNQMDLLENPSPALSCVVILQTVMQEARHNNLSLLR
RLKQLLKDDSRVFVFFANEHHSQTFPEEIQGESPNDRNDRAIRFATSWFA
EQLGETAAVTLLTNDRANLALAKEAKISAMTIHSYVESVQGQYPDLAELL
APETPVEADQRGESSINSGNTSVRRRGIQRVLLFEEHKPMSELKDGIRQG
RYFQGALRAERNSSNRCYVVAQGMQDDERIAVYIRGAQCINRAVDGDIVA
FEILPEAEWCTQSDKADVPTSKGGATGGEGDLKDTRPDNSLVPELTAQPP
IEDQEKTRKLVGAGTKQPFGRVVGIIRRHWRDKKYCGSLRKEGDRVVASG
KGQTTSALFMPVDKRMPYVRIQTRQRELLRNKRIIVALDAWPAWCKHPLG
HYVKTLGDVGSKATETEA
back to top

mRNA from alignment at F-serratus_M_contig137:152953..157875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig137.2707.1 ID=mRNA_F-serratus_M_contig137.2707.1|Name=mRNA_F-serratus_M_contig137.2707.1|organism=Fucus serratus male|type=mRNA|length=4923bp|location=Sequence derived from alignment at F-serratus_M_contig137:152953..157875+ (Fucus serratus male)
ATGCATCGTAGCAAGGCTTTCTTTAAGAAGACAAGGAAGGGCAAGATACT
TCGCGTTGTGTCCGACCACTACTTGAGAGACGATATTGGCTGCGGCTCCA
TCGCTGGCAAGCCGGTATCCATGGTGAGGAACACCAGACAACATATAAGA
GTGGTATTTGGTGCAAACTTTAGATGCCGATTTACGAGCTTCTCCATTGG
TGTAGATATATACGGCAAGTGATTCCGGATGATGGCTGTTGGTGTAGTCG
CCGTGCTGGCCTCCAATAGTGTATGTATGTATGGTCACACATATAGCAAG
AGTATGGACCAACCGGGTAAGGTCGCCAATCCTGCTCGTGGTCAGCTAAA
CAGGGAAAATAATATTCCCCCGTCCGCGTTCGTGCCTGAAAATTTGGTCT
CACGACGGTTTCGGGAGTCCCGTCCCGCGTCAGCCTGCTCATCTCTATAC
TCAGGCTGAATCTGCTCGTACTGGTACTCGTATGATTGTCTCATTTTCCC
CTTGAAAACTTAAATTAGAGCAACTTCGGTGCGGTAGCCAGTCAGCTCGT
CACGCTTCTAGTGACAGTCCCGCCCAACTGGGATCACAAGTTTTTCATGT
ACTACCCGTAGAGCTAGAGCTATTAGGTCATTAATACTTCGTGGTAATAA
ATAGAGCAGCAGCTTGTTTTTTTGTCTCTCGCTTTCGGCCGATCGACCTC
TACGGGCTATTAATAGATTATCAACCCCTAAACCGATTGGTCTAGTAGGT
AACCTGCACACCTGCTAGTGCGGAAGTCGTGAGTTCGATTCTTACCAAAG
TAGGATTTGTGTTCTTTCTTTCGTAACGTAAAGCGTGGGAACGTGAGTAA
GTAAAATTCAACCATTGGTTGACGAGTTGTAAGAGTGCTGAACTTGCATC
GCGATAAAAATTGTAAGGCGTGAACCGGGGAGAGATGGGAAGATCCTTTG
TGACCACAGGCAGGATGGTAATTACGAGGTCCATCGGCTATAAGTGTGAC
CATCCTTCCAATGGCCGTTAATCCTTCCGACCCTTCACGTGCTTTTACTG
ATCATTTCACTGATCATAAATATTAAAAAAAAATGTCTAGCCCGGTCAAG
TCGTGTAGGGGAGTTACCCGAATTCCACATGCAAGGAGTTGTACTGCACC
ACAGAGCAACGCTGCGCCTGCAAAGAGGGACAACAAAAGACACTCAAGTC
AAGAATATATAAAAAAGGGAAGTCGTTTCATTAGCATGTCCATTGCCCGG
GCTGGCACCTCACACCCATACTTGGGACAAAACCTTTGAACCCATACGCA
TGCTCAAAAGTTGCTGCCTCGATACCATGAAAACCAACTCCGTTATAATA
TCAGGAGCAACGAACGAATCACGTCCCCCGAACCTCAGCGTACTGTACAC
ACGAATTTCAGCAACCGAGCCGTTCTACAGCACACAAACAATGGTGGAGC
CCACATCTGTGAGCCAGAACAACCCATACAAGATATATATTCTCTCTTGC
CACTATATACAATTGCAATGAACGTGGAAAAGGATGCCTACTACTCTTTT
AGAGAAAAGTTCTGGACCACGGAGGCTAATCCATGTTCGTTTGTGTATAA
AGAAAAATCAGAACGCGCTTATACCTTCTGAGCATCCTCCAGTGTCAGGA
GAAAAGTTGTCAAAACATTTAGGTAGGATCAAAGGTTGCAAATACAAAAG
GAAAAACTAGATCGCGCCTATACCTTCTGAGCATCCCCTAGTCAGGGGGA
AAAAAATGTCAGAACGTTTAGGTGGGAGCATAGGCTGTTGTTGTGCTATT
GTAAAAGAAGGAGCGCTAGTGAGTTCTAAGGGATCACATTGGGCGGGTCC
AGAGAAGTACAGAAGTACAGTTTGATCTTCTGGCCCTTCAAAGCGCGCTC
AATTATCATTTAAATCCTCTGTACTGATCATTTGAGAATATCTTGATAAT
AGAGTTATGGCATGCATGGAACATCTAGGGCTGAACGCCTAACAACCTCT
GTCTGCGACAGCACAACCACTCCACAACCACCTCACAACCCTTCTTGTAC
CCGGAGAGACGTCACCAGCCTGTCGCGGGCCGCCGTCACGCCGCCTGGGC
CGAGATCGTAAAGCTACCGACTAGACATATGCACTTCTTGTTTTTTTGTG
CACTTCTCTCCCTCTGCCTCAAACGCTATTTTTTTTCTTGGAATTTTATT
TTTGTGAAACGGAGCGAGTTTTTATGACAGTCCGGTCTGTCGGAAGGCGA
GTAGCCCAGGGCCAGAAGGGTTAAGGATCTCCCCTCTCCCATGTACAGAT
ATTAATATCACTATTATTGATAATAGTGTATCGAAATGGTTACTCTTGGT
TTCTGGCCGTCCTTGCTCCGCAGGAAGATCTACTGCAGCTCGCTCGCGAG
TCGGTTATGAAGAAATTCCTGGTAAGTCCACAAATAAGATGATCAAAATC
AGGTTTCGTTATCGCATTCACCGATTATAAATACCGTACTAAAAATCGAT
ATTTACTGTTGAAAGCTACCAGTACAGTAGTATAGACTAATAAAAAGCAT
TACTGTACTACTGTATCACCCTTTCACTAAAAACTGGACGTCGTTACCTG
GTACGGTACCGTGATTGAACGAGTCAACAGGTCTTGGATACGAATGTGGT
CCTCAATCAGATGGACTTGCTGGAGAATCCAAGCCCGGCGCTGTCATGTG
TAGTCATTCTGCAGACGGTCATGCAGGTCAGTGAAGGATAACTAGAGCTA
TTGTACTACAGTAGACTGGACTACACCTGGTGTTCCTGGAAGTAGACTAT
TAATTAATACCAGTACAAACAACGAGAAAGGTTGAAGGGCGTGCGTGCAC
CATAACGCCATTATGATACAAGGTATAAAGTACTGTACCATGTATCTTAG
TTAAGCTCAGCTTCCCCCGAAAAATCAAAGGTAATGGTTTCCAATCGTAT
AACAACCCGACGTTCCCGGCTCACAGGAAGCTCGCCACAACAATCTCAGT
CTGCTTCGTCGGCTGAAGCAACTCCTGAAGGATGACTCTCGTGTCTTCGT
CTTCTTCGCCAACGAGCACCACAGCCAAACATTCCCCGAGGAGATTCAAG
GAGAATCTCCGAACGACAGAAACGATCGCGCAATTCGGTTCGCCACATCT
TGGTGAGTTTTGCCCCTACATTGCGCGGTCTGATGGGTTCAATCATACGA
GCACTTATATGAAAAGAAGTGCTGTCGCCCTTACATATTTAAACTTTGAA
TATTTTTTTACATCTCGGCGTCTTGAGTTACACCCGGGCATTTCTGACAG
GTTCGCTGAGCAGCTCGGGGAGACAGCTGCCGTCACGCTTCTGACCAACG
ACCGCGCTAACCTGGCTTTGGCGAAGGAGGCCAAGATTTCGGCGATGACT
ATACACTCTTACGTGGAGTCGGTTCAGGGGCAATATCCCGACCTTGCAGA
ACTTCTAGCCCCGGAGACACCCGTCGAAGCAGACCAGAGGGGGGAGTCAT
CTATTAACAGCGGAAACACTTCGGTGCGGAGGAGGGGCATACAACGGGTT
CTCCTGTTCGAAGAGCATAAGCCTATGTCTGAACTCAAGGATGGCATCCG
ACAAGGCCGGTAAGTCTTGAAGAGTGTCATCGCTGTGAGATTACCACTAC
TGTACACCTGCATGTCTTCGAAGCGCAAGGGTTGCGTTGTCGACTTCGTT
GAAAATATCTGACGGTCTTGTTTTCTTACCTCGTCCTCCAGGTACTTTCA
GGGGGCGCTGAGAGCGGAGCGCAATAGCTCAAATCGGTGCTACGTTGTAG
CGCAGGGCATGCAGGTACCATCACGCACGTTTCAAACTGCACACAGTAAA
TAGATGGGACGGGAGGATCACGGGGGTAGCGCAGCGACATAAACGACGAA
TAGGTTCTCAGACAAATGGTACAAAAATGGGCGGTACCAGAGCACACCTT
GGGTCGCTCGACCATCACTTCACTTCACTTCGCTATCGAAGTTTTCGTGA
TTTACGGTGCTATTTGTCCATTGTTTTGCAGGACGATGAACGGATTGCCG
TGTACATTCGCGGAGCTCAGTGCATCAACCGGGCGGTGGACGGAGATATC
GTTGCCTTCGAGATTTTGCCTGAGGCCGAATGGTGTACCCAGAGTGACAA
GGCAGACGTACCTACCTCAAAGGTCAGTTCCCACTTGGCCTCTTGCGATC
CCTGCAGTAAAGATCATGTTGGCCTGAAACACGATTGAGGGCGAACTTTC
GGTTGATGCAATCCCTGCACGTTGGCCCCCAGGGAGGCGCTACTGGTGGC
GAAGGCGACTTGAAAGACACCAGACCCGATAATAGCTTGGTTCCAGAGCT
GACTGCCCAACCACCCATTGAGGACCAGGAGAAGACTAGGAAACTTGTAG
GTGCTGGCACGAAGCAGCCATTCGGGCGCGTTGTGGGTATTATCCGACGC
CATTGGCGGGATAAGAAGTACTGCGGGTCGCTGAGGAAGGAAGGAGATCG
CGTGGTGGCGAGCGGCAAGGGCCAGACGACGAGTGCTCTCTTCATGCCCG
TGGACAAGAGGGTAAGGTCAGATGCATGTGTCTGCATGCGATCGAATCTT
TCCGATTCAGCGGCGTCTAGATCGCGCGCATCTTTCGTGCCGATTGTACT
TCTCCTCCTCAAGATATTTATGCTACGAAGTTACTTATAACATGTCTATA
TTTTTCTCTCTTTCGATTATAAGCTTCAATCAACTCTTGGTCCGCTGCGC
TGCTGTGGTCGCAGATGCCTTATGTGCGGATACAAACGCGCCAGCGTGAG
CTCCTTAGAAATAAAAGAATTATTGTGGCTTTGGACGCCTGGCCAGCGTG
GTGTAAGCACCCGCTTGGCCACTACGTGAAGACGTTGGGGGATGTAGGGT
CAAAGGCCACCGAAACCGAGGCA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig137:152953..157875+

>mRNA_F-serratus_M_contig137.2707.1 ID=mRNA_F-serratus_M_contig137.2707.1|Name=mRNA_F-serratus_M_contig137.2707.1|organism=Fucus serratus male|type=CDS|length=2808bp|location=Sequence derived from alignment at F-serratus_M_contig137:152953..157875+ (Fucus serratus male)
ATGCATCGTAGCAAGGCTTTCTTTAAGAAGACAAGGAAGGGCAAGATACT
TCGCGTTGTGTCCGACCACTACTTGAGAGACGATATTGGCTGCGGCTCCA
TCGCTGGCAAGCCGGTATCCATGATGCATCGTAGCAAGGCTTTCTTTAAG
AAGACAAGGAAGGGCAAGATACTTCGCGTTGTGTCCGACCACTACTTGAG
AGACGATATTGGCTGCGGCTCCATCGCTGGCAAGCCGGTATCCATGGAAG
ATCTACTGCAGCTCGCTCGCGAGTCGGTTATGAAGAAATTCCTGGAAGAT
CTACTGCAGCTCGCTCGCGAGTCGGTTATGAAGAAATTCCTGGTCTTGGA
TACGAATGTGGTCCTCAATCAGATGGACTTGCTGGAGAATCCAAGCCCGG
CGCTGTCATGTGTAGTCATTCTGCAGACGGTCATGCAGGTCTTGGATACG
AATGTGGTCCTCAATCAGATGGACTTGCTGGAGAATCCAAGCCCGGCGCT
GTCATGTGTAGTCATTCTGCAGACGGTCATGCAGGAAGCTCGCCACAACA
ATCTCAGTCTGCTTCGTCGGCTGAAGCAACTCCTGAAGGATGACTCTCGT
GTCTTCGTCTTCTTCGCCAACGAGCACCACAGCCAAACATTCCCCGAGGA
GATTCAAGGAGAATCTCCGAACGACAGAAACGATCGCGCAATTCGGTTCG
CCACATCTTGGAAGCTCGCCACAACAATCTCAGTCTGCTTCGTCGGCTGA
AGCAACTCCTGAAGGATGACTCTCGTGTCTTCGTCTTCTTCGCCAACGAG
CACCACAGCCAAACATTCCCCGAGGAGATTCAAGGAGAATCTCCGAACGA
CAGAAACGATCGCGCAATTCGGTTCGCCACATCTTGGTTCGCTGAGCAGC
TCGGGGAGACAGCTGCCGTCACGCTTCTGACCAACGACCGCGCTAACCTG
GCTTTGGCGAAGGAGGCCAAGATTTCGGCGATGACTATACACTCTTACGT
GGAGTCGGTTCAGGGGCAATATCCCGACCTTGCAGAACTTCTAGCCCCGG
AGACACCCGTCGAAGCAGACCAGAGGGGGGAGTCATCTATTAACAGCGGA
AACACTTCGGTGCGGAGGAGGGGCATACAACGGGTTCTCCTGTTCGAAGA
GCATAAGCCTATGTCTGAACTCAAGGATGGCATCCGACAAGGCCGGTTCG
CTGAGCAGCTCGGGGAGACAGCTGCCGTCACGCTTCTGACCAACGACCGC
GCTAACCTGGCTTTGGCGAAGGAGGCCAAGATTTCGGCGATGACTATACA
CTCTTACGTGGAGTCGGTTCAGGGGCAATATCCCGACCTTGCAGAACTTC
TAGCCCCGGAGACACCCGTCGAAGCAGACCAGAGGGGGGAGTCATCTATT
AACAGCGGAAACACTTCGGTGCGGAGGAGGGGCATACAACGGGTTCTCCT
GTTCGAAGAGCATAAGCCTATGTCTGAACTCAAGGATGGCATCCGACAAG
GCCGGTACTTTCAGGGGGCGCTGAGAGCGGAGCGCAATAGCTCAAATCGG
TGCTACGTTGTAGCGCAGGGCATGCAGGTACTTTCAGGGGGCGCTGAGAG
CGGAGCGCAATAGCTCAAATCGGTGCTACGTTGTAGCGCAGGGCATGCAG
GACGATGAACGGATTGCCGTGTACATTCGCGGAGCTCAGTGCATCAACCG
GGCGGTGGACGGAGATATCGTTGCCTTCGAGATTTTGCCTGAGGCCGAAT
GGTGTACCCAGAGTGACAAGGCAGACGTACCTACCTCAAAGGACGATGAA
CGGATTGCCGTGTACATTCGCGGAGCTCAGTGCATCAACCGGGCGGTGGA
CGGAGATATCGTTGCCTTCGAGATTTTGCCTGAGGCCGAATGGTGTACCC
AGAGTGACAAGGCAGACGTACCTACCTCAAAGGGAGGCGCTACTGGTGGC
GAAGGCGACTTGAAAGACACCAGACCCGATAATAGCTTGGTTCCAGAGCT
GACTGCCCAACCACCCATTGAGGACCAGGAGAAGACTAGGAAACTTGTAG
GTGCTGGCACGAAGCAGCCATTCGGGCGCGTTGTGGGTATTATCCGACGC
CATTGGCGGGATAAGAAGTACTGCGGGTCGCTGAGGAAGGAAGGAGATCG
CGTGGTGGCGAGCGGCAAGGGCCAGACGACGAGTGCTCTCTTCATGCCCG
TGGACAAGAGGGGAGGCGCTACTGGTGGCGAAGGCGACTTGAAAGACACC
AGACCCGATAATAGCTTGGTTCCAGAGCTGACTGCCCAACCACCCATTGA
GGACCAGGAGAAGACTAGGAAACTTGTAGGTGCTGGCACGAAGCAGCCAT
TCGGGCGCGTTGTGGGTATTATCCGACGCCATTGGCGGGATAAGAAGTAC
TGCGGGTCGCTGAGGAAGGAAGGAGATCGCGTGGTGGCGAGCGGCAAGGG
CCAGACGACGAGTGCTCTCTTCATGCCCGTGGACAAGAGGATGCCTTATG
TGCGGATACAAACGCGCCAGCGTGAGCTCCTTAGAAATAAAAGAATTATT
GTGGCTTTGGACGCCTGGCCAGCGTGGTGTAAGCACCCGCTTGGCCACTA
CGTGAAGACGTTGGGGGATGTAGGGTCAAAGGCCACCGAAACCGAGGCAA
TGCCTTATGTGCGGATACAAACGCGCCAGCGTGAGCTCCTTAGAAATAAA
AGAATTATTGTGGCTTTGGACGCCTGGCCAGCGTGGTGTAAGCACCCGCT
TGGCCACTACGTGAAGACGTTGGGGGATGTAGGGTCAAAGGCCACCGAAA
CCGAGGCA
back to top