mRNA_F-serratus_M_contig1369.2695.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1369.2695.1
Unique NamemRNA_F-serratus_M_contig1369.2695.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1369.2695.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.510e-19
Identity = 54/143 (37.76%), Postives = 87/143 (60.84%), Query Frame = 2 
Query:  197 SDFWIGDSGASCHMPNDPSQMYCMRPPPFEKREVITSNGIRVKIECIGNLDVMFHGRSDESITLIDVAYVPDLKFNLFSFHKAQQTHVIILDAVGAHIMGKNLTFPREKSGSHLRATRL---------VAGTVGARPGTNRAL 598
            S  WIGDS ++ H  +D + +Y  RPP  E+  +   +G ++K EC G+LDV+FH R D  +T+ D+A VPDL F+L S +  Q+TH ++L++ G  I+   + F +  +G++++ATR+         VA TV  RPG  R++
Sbjct:   13 STVWIGDSASTVHATSDGTHVYNTRPPLAEETFLFIGDGRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETHDLLLNSAGTWILNGRVHFSKLPTGNYIQATRIAHGASPPAMVAATV--RPGRPRSI 153
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BLAST of mRNA_F-serratus_M_contig1369.2695.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.150e-8
Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = 2 
Query:  740 PPVGSVLGQIEIGRKPHIESDCFLSAAALNPGMMKDGKVVDINHLHVSLAHAHASVLQATAKQHGFRLKG-QLISCSACSMAKGNRAPTPHHTTARAKRPMELVHIDTAGPFPA-SLGGSRFVVMTQ 1114
            P +G +L       +P +++ C   AA + PG  K     D+N  H S  HAH  +L+ TAKQ G  L G  L+SC+ CSMAKG        T  RA + +  V ID  G     S+GG  + ++ +
Sbjct:  181 PQLGKLLSLWGYQTEPEVDTAC---AAIIVPGEAKAATPTDLNEFHNSHGHAHERLLRLTAKQQGVELTGGPLLSCTGCSMAKGQVKAVQRFTDTRAVKKLFRVFIDLGGRMQFHSIGGRWYTLIIR 304
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BLAST of mRNA_F-serratus_M_contig1369.2695.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.230e-8
Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = 2 
Query:  740 PPVGSVLGQIEIGRKPHIESDCFLSAAALNPGMMKDGKVVDINHLHVSLAHAHASVLQATAKQHGFRLKG-QLISCSACSMAKGNRAPTPHHTTARAKRPMELVHIDTAGPFPA-SLGGSRFVVMTQ 1114
            P +G +L       +P +++ C   AA + PG  K     D+N  H S  HAH  +L+ TAKQ G  L G  L+SC+ CSMAKG        T  RA + +  V ID  G     S+GG  + ++ +
Sbjct:  663 PQLGKLLSLWGYQTEPEVDTAC---AAIIVPGEAKAATPTDLNEFHNSHGHAHERLLRLTAKQQGVELTGGPLLSCTGCSMAKGQVKAVQRFTDTRAVKKLFRVFIDLGGRMQFHSIGGRWYTLIIR 786
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1369.2695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JCD8_9PHAE1.510e-1937.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKS3_9PHAE1.150e-834.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE1.230e-834.65Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1369contigF-serratus_M_contig1369:176748..177864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1117
Cds size1035
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.4839559-UTR-F-serratus_M_contig1369:176747..1768291622929347.4839559-UTR-F-serratus_M_contig1369:176747..176829Fucus serratus maleUTRF-serratus_M_contig1369 176748..176829 +
1690962809.3624141-UTR-F-serratus_M_contig1369:176747..1768291690962809.3624141-UTR-F-serratus_M_contig1369:176747..176829Fucus serratus maleUTRF-serratus_M_contig1369 176748..176829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.5016599-CDS-F-serratus_M_contig1369:176829..1778641622929347.5016599-CDS-F-serratus_M_contig1369:176829..177864Fucus serratus maleCDSF-serratus_M_contig1369 176830..177864 +
1690962809.3733408-CDS-F-serratus_M_contig1369:176829..1778641690962809.3733408-CDS-F-serratus_M_contig1369:176829..177864Fucus serratus maleCDSF-serratus_M_contig1369 176830..177864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1369.2695.1prot_F-serratus_M_contig1369.2695.1Fucus serratus malepolypeptideF-serratus_M_contig1369 176830..177864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1369.2695.1

>prot_F-serratus_M_contig1369.2695.1 ID=prot_F-serratus_M_contig1369.2695.1|Name=mRNA_F-serratus_M_contig1369.2695.1|organism=Fucus serratus male|type=polypeptide|length=345bp
MTQFCPPGESVDFRAFVSNNMVYTVPNSAFAVQSYKNRSDFWIGDSGASC
HMPNDPSQMYCMRPPPFEKREVITSNGIRVKIECIGNLDVMFHGRSDESI
TLIDVAYVPDLKFNLFSFHKAQQTHVIILDAVGAHIMGKNLTFPREKSGS
HLRATRLVAGTVGARPGTNRALASQISTPLSSCVPSFPPSVPRSSQISSA
SKISGTDAAHDDLLEPISSPPVGSVLGQIEIGRKPHIESDCFLSAAALNP
GMMKDGKVVDINHLHVSLAHAHASVLQATAKQHGFRLKGQLISCSACSMA
KGNRAPTPHHTTARAKRPMELVHIDTAGPFPASLGGSRFVVMTQ*
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mRNA from alignment at F-serratus_M_contig1369:176748..177864+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1369.2695.1 ID=mRNA_F-serratus_M_contig1369.2695.1|Name=mRNA_F-serratus_M_contig1369.2695.1|organism=Fucus serratus male|type=mRNA|length=1117bp|location=Sequence derived from alignment at F-serratus_M_contig1369:176748..177864+ (Fucus serratus male)
GCAAATGCCCACGCCGCCGGCCCCGCATGGTTCGCCGGCACCTTCAAACC
CGTCCTGAAGCTTCTCGACCGAGCAGGCCGTGATGACCCAGTTCTGTCCC
CCAGGCGAGTCTGTGGATTTTCGTGCGTTTGTGTCTAACAATATGGTGTA
TACAGTACCGAACAGTGCATTCGCGGTGCAATCGTACAAGAATCGTAGCG
ATTTTTGGATAGGTGATAGTGGTGCATCCTGTCACATGCCGAATGACCCA
TCACAGATGTACTGCATGAGACCCCCCCCTTTTGaAAAAAGGGAAGTAAT
TACGAGCAACGGTATTAGGGTGAAGATAGAATGCATCGGCAATCTTGACG
TGATGTTTCATGGGAGAAGTGACGAATCGATCACACTGATCGACGTCGCG
TATGTGCCGGATTTGAAATTCAATCTGTTTTCATTCCACAAGGCCCAACA
GACCCATGTAATCATTTTGGATGCAGTAGGAGCACACATCATGGGGAAAA
ATCTTACTTTCCCTCGCGAGAAAAGCGGTTCGCATTTGAGAGCGACTCGG
CTTGTGGCTGGTACTGTAGGAGCACGACCGGGGACGAACCGTGCACTAGC
CAGCCAAATTTCTACCCCCCTTAGTAGCTGTGTGCCATCTTTCCCCCCGA
GTGTTCCGAGAAGTTCACAGATTTCGAGTGCGTCGAAGATTTCGGGGACT
GATGCAGCGCATGACGATTTGCTGGAACCGATCTCCTCTCCCCCCGTAGG
TTCTGTATTGGGACAAATCGAGATTGGGAGGAAACCCCATATTGAGTCGG
ATTGTTTCTTGTCAGCGGCCGCCCTGAACCCAGGCATGATGAAAGATGGT
AAAGTCGTAGATATTAACCATCTCCATGTCTCCCTCGCCCATGCCCATGC
GAGTGTTTTGCAAGCGACAGCGAAACAGCACGGTTTTCGATTGAAGGGAC
AACTGATTTCGTGTTCGGCATGCTCAATGGCTAAGGGGAACCGGGCACCA
ACTCCCCATCATACGACGGCGCGCGCCAAGAGGCCGATGGAGCTCGTCCA
CATCGACACCGCGGGTCCTTTCCCGGCATCTCTCGGGGGATCGCGGTTCG
TAGTCATGACTCAGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1369:176748..177864+

>mRNA_F-serratus_M_contig1369.2695.1 ID=mRNA_F-serratus_M_contig1369.2695.1|Name=mRNA_F-serratus_M_contig1369.2695.1|organism=Fucus serratus male|type=CDS|length=2070bp|location=Sequence derived from alignment at F-serratus_M_contig1369:176748..177864+ (Fucus serratus male)
ATGACCCAGTTCTGTCCCCCAGGCGAGTCTGTGGATTTTCGTGCGTTTGT
GTCTAACAATATGGTGTATACAGTACCGAACAGTGCATTCGCGGTGCAAT
CGTACAAGAATCGTAGCGATTTTTGGATAGGTGATAGTGGTGCATCCTGT
CACATGCCGAATGACCCATCACAGATGTACTGCATGAGACCCCCCCCTTT
TGaAAAAAGGGAAGTAATTACGAGCAACGGTATTAGGGTGAAGATAGAAT
GCATCGGCAATCTTGACGTGATGTTTCATGGGAGAAGTGACGAATCGATC
ACACTGATCGACGTCGCGTATGTGCCGGATTTGAAATTCAATCTGTTTTC
ATTCCACAAGGCCCAACAGACCCATGTAATCATTTTGGATGCAGTAGGAG
CACACATCATGGGGAAAAATCTTACTTTCCCTCGCGAGAAAAGCGGTTCG
CATTTGAGAGCGACTCGGCTTGTGGCTGGTACTGTAGGAGCACGACCGGG
GACGAACCGTGCACTAGCCAGCCAAATTTCTACCCCCCTTAGTAGCTGTG
TGCCATCTTTCCCCCCGAGTGTTCCGAGAAGTTCACAGATTTCGAGTGCG
TCGAAGATTTCGGGGACTGATGCAGCGCATGACGATTTGCTGGAACCGAT
CTCCTCTCCCCCCGTAGGTTCTGTATTGGGACAAATCGAGATTGGGAGGA
AACCCCATATTGAGTCGGATTGTTTCTTGTCAGCGGCCGCCCTGAACCCA
GGCATGATGAAAGATGGTAAAGTCGTAGATATTAACCATCTCCATGTCTC
CCTCGCCCATGCCCATGCGAGTGTTTTGCAAGCGACAGCGAAACAGCACG
GTTTTCGATTGAAGGGACAACTGATTTCGTGTTCGGCATGCTCAATGGCT
AAGGGGAACCGGGCACCAACTCCCCATCATACGACGGCGCGCGCCAAGAG
GCCGATGGAGCTCGTCCACATCGACACCGCGGGTCCTTTCCCGGCATCTC
TCGGGGGATCGCGGTTCGTAGTCATGACTCAGTAGATGACCCAGTTCTGT
CCCCCAGGCGAGTCTGTGGATTTTCGTGCGTTTGTGTCTAACAATATGGT
GTATACAGTACCGAACAGTGCATTCGCGGTGCAATCGTACAAGAATCGTA
GCGATTTTTGGATAGGTGATAGTGGTGCATCCTGTCACATGCCGAATGAC
CCATCACAGATGTACTGCATGAGACCCCCCCCTTTTGaAAAAAGGGAAGT
AATTACGAGCAACGGTATTAGGGTGAAGATAGAATGCATCGGCAATCTTG
ACGTGATGTTTCATGGGAGAAGTGACGAATCGATCACACTGATCGACGTC
GCGTATGTGCCGGATTTGAAATTCAATCTGTTTTCATTCCACAAGGCCCA
ACAGACCCATGTAATCATTTTGGATGCAGTAGGAGCACACATCATGGGGA
AAAATCTTACTTTCCCTCGCGAGAAAAGCGGTTCGCATTTGAGAGCGACT
CGGCTTGTGGCTGGTACTGTAGGAGCACGACCGGGGACGAACCGTGCACT
AGCCAGCCAAATTTCTACCCCCCTTAGTAGCTGTGTGCCATCTTTCCCCC
CGAGTGTTCCGAGAAGTTCACAGATTTCGAGTGCGTCGAAGATTTCGGGG
ACTGATGCAGCGCATGACGATTTGCTGGAACCGATCTCCTCTCCCCCCGT
AGGTTCTGTATTGGGACAAATCGAGATTGGGAGGAAACCCCATATTGAGT
CGGATTGTTTCTTGTCAGCGGCCGCCCTGAACCCAGGCATGATGAAAGAT
GGTAAAGTCGTAGATATTAACCATCTCCATGTCTCCCTCGCCCATGCCCA
TGCGAGTGTTTTGCAAGCGACAGCGAAACAGCACGGTTTTCGATTGAAGG
GACAACTGATTTCGTGTTCGGCATGCTCAATGGCTAAGGGGAACCGGGCA
CCAACTCCCCATCATACGACGGCGCGCGCCAAGAGGCCGATGGAGCTCGT
CCACATCGACACCGCGGGTCCTTTCCCGGCATCTCTCGGGGGATCGCGGT
TCGTAGTCATGACTCAGTAG
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