mRNA_F-serratus_M_contig1362.2667.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1362.2667.1
Unique NamemRNA_F-serratus_M_contig1362.2667.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1362.2667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1362contigF-serratus_M_contig1362:11582..12385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size453
Cds size126
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1362.2667.1prot_F-serratus_M_contig1362.2667.1Fucus serratus malepolypeptideF-serratus_M_contig1362 11909..12385 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929343.6790266-UTR-F-serratus_M_contig1362:11581..119081622929343.6790266-UTR-F-serratus_M_contig1362:11581..11908Fucus serratus maleUTRF-serratus_M_contig1362 11582..11908 +
1690962807.6792212-UTR-F-serratus_M_contig1362:11581..119081690962807.6792212-UTR-F-serratus_M_contig1362:11581..11908Fucus serratus maleUTRF-serratus_M_contig1362 11582..11908 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929343.6947308-CDS-F-serratus_M_contig1362:11908..119861622929343.6947308-CDS-F-serratus_M_contig1362:11908..11986Fucus serratus maleCDSF-serratus_M_contig1362 11909..11986 +
1690962807.6899326-CDS-F-serratus_M_contig1362:11908..119861690962807.6899326-CDS-F-serratus_M_contig1362:11908..11986Fucus serratus maleCDSF-serratus_M_contig1362 11909..11986 +
1622929343.7137778-CDS-F-serratus_M_contig1362:12337..123851622929343.7137778-CDS-F-serratus_M_contig1362:12337..12385Fucus serratus maleCDSF-serratus_M_contig1362 12338..12385 +
1690962807.7053576-CDS-F-serratus_M_contig1362:12337..123851690962807.7053576-CDS-F-serratus_M_contig1362:12337..12385Fucus serratus maleCDSF-serratus_M_contig1362 12338..12385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1362.2667.1

>prot_F-serratus_M_contig1362.2667.1 ID=prot_F-serratus_M_contig1362.2667.1|Name=mRNA_F-serratus_M_contig1362.2667.1|organism=Fucus serratus male|type=polypeptide|length=42bp
MDNDQARRTKWNSVAAEVDSEMIIVRDIMEQMAQTAADIRNS
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mRNA from alignment at F-serratus_M_contig1362:11582..12385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1362.2667.1 ID=mRNA_F-serratus_M_contig1362.2667.1|Name=mRNA_F-serratus_M_contig1362.2667.1|organism=Fucus serratus male|type=mRNA|length=804bp|location=Sequence derived from alignment at F-serratus_M_contig1362:11582..12385+ (Fucus serratus male)
GCGGCTAGTCTGGTCGACTTCTTGAGTTGCGACAAAAACCTTCCACGGCA
GAGCACACAGTTTGTTTGCATTTTGTGCGGTGAGCGGGCGTTGATAGTAG
GCGAAATTTGACGTCAAATGTACTGGTAAGTATGAAATCTGGGCAGATGC
TGCTGCTTTTCCAGCGCACCAATATTCTACTGTTGTTGTTATATTTAGTG
AGGGAACAACATAGAGCTAAATAGCTCGTTATATGCATCAAAAAAAGCTC
TGCAGACAGCACTGTCGTAATGGGTCATTGCGCTACCTCTACAGGCAAGG
GTAGCCATCGACAACTTCGTGGCAAACATGGACAACGACCAAGCGAGGAG
GACCAAGTGGAATAGCGTCGCCGCGGAAGTAGATTCGGAGATGATTATTG
TAAGGGTGAGTCTCAACCGAAATATCAAGACAAAAAAGAAAGAATAGAAC
AACATCTCCGGCTCCAGCTATGCCCCCCCCCCCCCCTTCAATAGAACAGA
ATATCGTGTTGATATTAATTATAGTGGTACTCGGGGCACGGGGCACTTTC
GACGCGTCGGGGCGAATTTATGTTTCGTTTATCAGTAGCGCTTCTACTGT
TGTGTAAGATCAAAAACGTGAAACAAGCGGAGTCTTCTTCAGAATTCGGC
TCTCCGCGAGCGCTTGACCATTACATGGTCTTCGCTGTAGAAGGGGAAGG
GGACACCTACTGCTGCTGTAATCGTTGCTGGTATGGTCACGCTCTTTGAT
GTGCAGGATATCATGGAGCAAATGGCTCAAACAGCCGCGGACATCCGGAA
CTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1362:11582..12385+

>mRNA_F-serratus_M_contig1362.2667.1 ID=mRNA_F-serratus_M_contig1362.2667.1|Name=mRNA_F-serratus_M_contig1362.2667.1|organism=Fucus serratus male|type=CDS|length=252bp|location=Sequence derived from alignment at F-serratus_M_contig1362:11582..12385+ (Fucus serratus male)
ATGGACAACGACCAAGCGAGGAGGACCAAGTGGAATAGCGTCGCCGCGGA
AGTAGATTCGGAGATGATTATTGTAAGGATGGACAACGACCAAGCGAGGA
GGACCAAGTGGAATAGCGTCGCCGCGGAAGTAGATTCGGAGATGATTATT
GTAAGGGATATCATGGAGCAAATGGCTCAAACAGCCGCGGACATCCGGAA
CTCCGATATCATGGAGCAAATGGCTCAAACAGCCGCGGACATCCGGAACT
CC
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