mRNA_F-serratus_M_contig135.2600.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig135.2600.1
Unique NamemRNA_F-serratus_M_contig135.2600.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig135.2600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig135contigF-serratus_M_contig135:15027..15364 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size340
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929332.5449936-UTR-F-serratus_M_contig135:15026..150551622929332.5449936-UTR-F-serratus_M_contig135:15026..15055Fucus serratus maleUTRF-serratus_M_contig135 15027..15055 +
1690962802.3012292-UTR-F-serratus_M_contig135:15026..150551690962802.3012292-UTR-F-serratus_M_contig135:15026..15055Fucus serratus maleUTRF-serratus_M_contig135 15027..15055 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929332.5595264-CDS-F-serratus_M_contig135:15055..153641622929332.5595264-CDS-F-serratus_M_contig135:15055..15364Fucus serratus maleCDSF-serratus_M_contig135 15056..15364 +
1690962802.310976-CDS-F-serratus_M_contig135:15055..153641690962802.310976-CDS-F-serratus_M_contig135:15055..15364Fucus serratus maleCDSF-serratus_M_contig135 15056..15364 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig135.2600.1prot_F-serratus_M_contig135.2600.1Fucus serratus malepolypeptideF-serratus_M_contig135 15056..15364 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig135.2600.1

>prot_F-serratus_M_contig135.2600.1 ID=prot_F-serratus_M_contig135.2600.1|Name=mRNA_F-serratus_M_contig135.2600.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MGEARTREKRRWWLGQKKIRPAFSFERRARRNAWGAPLVVLDEVTLHTFP
ARNIPGFVFRKSEVALRRGCRSRVRIMEEATVRGLSSRRRFWVFSSAKIV
WKC
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mRNA from alignment at F-serratus_M_contig135:15027..15364+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig135.2600.1 ID=mRNA_F-serratus_M_contig135.2600.1|Name=mRNA_F-serratus_M_contig135.2600.1|organism=Fucus serratus male|type=mRNA|length=338bp|location=Sequence derived from alignment at F-serratus_M_contig135:15027..15364+ (Fucus serratus male)
GTTCGGAAGGGGAAGCAATAAGGTGCGAGATGGGCGAAGCTCGAACGCGA
GAGAAGAGACGATGGTGGCTCGGCCAAAAAAAAATCCGTCCGGCATTCTC
TTTCGAGCGTCGAGCGAGACGCAATGCATGGGGGGCGCCTCTCGTTGTTT
TGGATGAGGTCACCCTGCACACATTCCCTGCGCGGAATATTCCTGGATTT
GTTTTCAGAAAATCCGAGGTCGCTTTGCGGAGAGGATGCAGGAGCCGGGT
GAGGATAATGGAGGAAGCTACTGTACGGGGTCTCAGTTCACGCAGGCGTT
TTTGGGTGTTTTCTTCGGCGAAGATTGTGTGGAAGTGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig135:15027..15364+

>mRNA_F-serratus_M_contig135.2600.1 ID=mRNA_F-serratus_M_contig135.2600.1|Name=mRNA_F-serratus_M_contig135.2600.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig135:15027..15364+ (Fucus serratus male)
ATGGGCGAAGCTCGAACGCGAGAGAAGAGACGATGGTGGCTCGGCCAAAA
AAAAATCCGTCCGGCATTCTCTTTCGAGCGTCGAGCGAGACGCAATGCAT
GGGGGGCGCCTCTCGTTGTTTTGGATGAGGTCACCCTGCACACATTCCCT
GCGCGGAATATTCCTGGATTTGTTTTCAGAAAATCCGAGGTCGCTTTGCG
GAGAGGATGCAGGAGCCGGGTGAGGATAATGGAGGAAGCTACTGTACGGG
GTCTCAGTTCACGCAGGCGTTTTTGGGTGTTTTCTTCGGCGAAGATTGTG
TGGAAGTGTATGGGCGAAGCTCGAACGCGAGAGAAGAGACGATGGTGGCT
CGGCCAAAAAAAAATCCGTCCGGCATTCTCTTTCGAGCGTCGAGCGAGAC
GCAATGCATGGGGGGCGCCTCTCGTTGTTTTGGATGAGGTCACCCTGCAC
ACATTCCCTGCGCGGAATATTCCTGGATTTGTTTTCAGAAAATCCGAGGT
CGCTTTGCGGAGAGGATGCAGGAGCCGGGTGAGGATAATGGAGGAAGCTA
CTGTACGGGGTCTCAGTTCACGCAGGCGTTTTTGGGTGTTTTCTTCGGCG
AAGATTGTGTGGAAGTGT
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