mRNA_F-serratus_M_contig1344.2555.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1344.2555.1
Unique NamemRNA_F-serratus_M_contig1344.2555.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1344.2555.1 vs. uniprot
Match: D8LUC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC0_ECTSI)

HSP 1 Score: 432 bits (1112), Expect = 1.090e-146
Identity = 230/388 (59.28%), Postives = 287/388 (73.97%), Query Frame = 3 
Query:  174 TGDPTIDDEFTIETLY-PEARTSAKEPAGDWSEDKVSMAGLLSLQWPRQGLRLGAVEYFALGTIILFLAVYLRGRRRNYDIAHTFIRSVHSLFCARFLEAGPALETPPVDRRQLLARDSCSSFVYYATGSRSCSSVLVTISLTKRHDLFMLLWHLFNP-VADTVTVEVGLGDDDLEPLVFAVSQKRDAKKILEEIPHLQDYVGVTRSQSL-PSALACLSESSTLVEPLLPSAAVKTLTEYHDLLELMHFTDQNQQPILGQAVTPRKALRFRFRIEAAVGDRVGSMRGAVEMIELALFYIDFLHKYQMAPGMKKKALERREAVAKRKAKLTHAQRQERFQQLKNEKLQKEREEYENLTPEQKRRRDLRDEKRAKKASANKKLKMKMTRS 1328
            +GD ++DDEF     + PE   +       WS+ KVS+AGL S+QW +Q L L AVEY     ++ ++AVY+ GRRRNY IAH FI  VH LFC+RFLEAGPA E PPVDRRQLLARDSCS+F+YYATGSR C  V VTI L  RHDLFM+LW  F+P + D VTVEV   D+D+EP++FAV++KR+ KK+L+E+PHLQDY GVTR+ SL P +L CLSESS L+EP+LP           +LLELM+ TDQN QPILGQ  TP+K LR+ FR+            GA EM+ELAL YI  L+K++M+ G KKKALERR AV KRK+ +THAQRQERFQ LKNE+LQ+EREEYE LTPEQKRRRDLRDEK+AKK +++K+ KM++T++
Sbjct:    8 SGDMSLDDEFRTNPFFSPETAGAGHPSTAVWSDGKVSLAGLFSMQWAKQELHLTAVEYLGFALLLGYVAVYIAGRRRNYHIAHGFIMGVHGLFCSRFLEAGPASEMPPVDRRQLLARDSCSTFLYYATGSRRCLGVQVTIDLASRHDLFMVLWSFFSPAMGDRVTVEVAFDDEDIEPVIFAVARKREVKKLLQEVPHLQDYAGVTRAPSLLPPSLVCLSESSALLEPMLPXXXXXXXXXXXNLLELMYVTDQNDQPILGQEHTPKKVLRYTFRLPVGSARGGDGSDGATEMMELALSYIQLLNKFKMSAGTKKKALERRAAVLKRKSAITHAQRQERFQMLKNERLQREREEYEGLTPEQKRRRDLRDEKKAKKVASSKRHKMRVTKA 395
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BLAST of mRNA_F-serratus_M_contig1344.2555.1 vs. uniprot
Match: A0A7S2UXR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXR9_9STRA)

HSP 1 Score: 183 bits (465), Expect = 4.710e-51
Identity = 113/288 (39.24%), Postives = 170/288 (59.03%), Query Frame = 3 
Query:  489 PPVDRRQLLARDSCSSFVYYATGSRSCSSVLVTISLTKRHDLFMLLWHLF---NPVADTVTVEVGLGDDDLEPLVFAVSQKRDAKKILEEIPHLQDYVGVTRSQSLPSALACLSESSTLVEPLLPSAAVKTLTEYHDLLELMHFTDQNQQPILGQAVTPRKALRFRFRIEAAVGDRVGSMRGAVEMIELALFYIDFLHKYQMAPGMKK------KALERREAVAKRKAKLTHAQRQERFQQLKNEKLQKEREEYENLTPEQKRRRDLRDEKRAKKASANKKLKMKMTR 1325
            PP+    +L ++S S F +YATG  +C   LV + L++RHDLF   W L    +P  DT+T+EV + +DD+EP VFAV Q++  K +  ++  L+ + G+  S  +PS  A L++S  +V+ +L    VK L ++  L   MHFTDQN  P++GQ+V PR  LRF+F +      +V  M     ++E++L +ID      +A G+K       KA ERR   A+R+ +  H QRQE  Q+ K EKL++ER  YE +T EQK + D R+EK+  + S  +K+KMKM R
Sbjct:    7 PPLSPGDMLFKESQSDFFFYATGRNNCHGCLVRLELSRRHDLFATFWGLLKSDHPAKDTLTIEVVMNEDDMEPFVFAVCQRKLLKSMHSDVWDLKTFTGIINSSEVPSGFAVLADSQEVVDKILHGPVVKALGKFEHLFISMHFTDQNTDPVIGQSVVPRNVLRFKFLLP-----QVAEMAELRRLMEMSLHFID-----HVASGVKLSQQACWKATERRNEAAERQFRRQHEQRQEEMQRKKAEKLRRERSAYEMMTSEQKAKWDAREEKKLARNSQGRKMKMKMQR 284
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BLAST of mRNA_F-serratus_M_contig1344.2555.1 vs. uniprot
Match: A8WVF4_CAEBR (Protein CBR-CCDC-47 n=2 Tax=Caenorhabditis TaxID=6237 RepID=A8WVF4_CAEBR)

HSP 1 Score: 103 bits (258), Expect = 1.920e-20
Identity = 92/340 (27.06%), Postives = 166/340 (48.82%), Query Frame = 3 
Query:  336 VEYFALGTIILFLAVYLRGRRRNYDIAHTFIRSVHSLFCARFLEAGPALETPPVDRRQLLARDSCSSFVYYATGSRSCSSVLVTISLTKRHDLFMLLWHLFNPVADTVTVEVGL-GDDDLEPLVFAVSQKRDAKKILEEIPHLQDYVG----VTRSQSLPSALACLSESSTLVEPLLPSAAVKTLTEYHDLLELMHFTDQ--NQQPILGQAVT----PRKALRFRFRIEAAVGDRVGSMRGAVEMIELALFYIDFLHKYQMAPGMKKKALERREAVAKRKAKLTHAQRQERFQQLKNEKLQKEREEY-ENLTPEQKRRRDLRDEKRAKKASANKKLKMKM 1319
            VE   +  I ++L  Y+ G+  N  IAHT           +F   G    T        L RD+ SSF  + +G  +  S+ + +   KR DL   +  +++P +D +T++V L G +D++PL+FAV +K+ A K   E+  L  YV     V +  +LP+     ++ + +V  +L    V  L ++ + +E +H +DQ    +P  G++ T    P++ +     +     D       A E++ L  + ID + K +++   K+KA  +R+   +   K THA RQE  Q  K EK ++ +++  +   PE++RR + ++ K+  KA   K  +MK+
Sbjct:  119 VEGIVVLIIFIYLINYIIGKTTNSSIAHTVFEMCRPTLEEQFAVVGDDGVTDLDKLEPTLKRDTDSSFSAWCSGRVNVHSLFLQMKTIKRQDLVSRVLDIYDPSSDKMTIKVSLEGGNDVDPLIFAVGEKKIATKNFREMFDLNSYVSEKKQVAQQLNLPATWQLYADQNEVVYSILEPGVVSLLRKHEEAIEFIHISDQYTGPKPAEGESYTRLPEPQRYMFMSLNLAKLGQDE----ESAAEILNLVFYLIDRVKKMKLSKDAKQKAERKRKEFEEAFLKQTHAFRQEAAQARKEEKTRERKQKLMDEHDPERQRRLEAKELKKEAKAKQPKMKQMKV 454
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BLAST of mRNA_F-serratus_M_contig1344.2555.1 vs. uniprot
Match: E3M8G4_CAERE (CRE-CCDC-47 protein n=3 Tax=Caenorhabditis TaxID=6237 RepID=E3M8G4_CAERE)

HSP 1 Score: 99.8 bits (247), Expect = 5.010e-19
Identity = 77/299 (25.75%), Postives = 145/299 (48.49%), Query Frame = 3 
Query:  336 VEYFALGTIILFLAVYLRGRRRNYDIAHTFIRSVHSLFCARFLEAGPALETPPVDRRQLLARDSCSSFVYYATGSRSCSSVLVTISLTKRHDLFMLLWHLFNPVADTVTVEVGL-GDDDLEPLVFAVSQKRDAKKILEEIPHLQDYVG----VTRSQSLPSALACLSESSTLVEPLLPSAAVKTLTEYHDLLELMHFTDQ--NQQPILGQAVT----PRKALRFRFRIEAAVGDRVGSMRGAVEMIELALFYIDFLHKYQMAPGMKKKALERREAVAKRKAKLTHAQRQERFQQLKNEK 1199
            VE   +  I+++L  Y+ G+  N  IAH            +F   G    T        L RD+ S+F  + +G  + +S+ + + + KR DL   +  +F+P  D +T+++ L G +D++PL+FAV +K+ A K  +E+  L  YV       +  +LP+     ++ + ++  +L    V  L ++ + +E +H +DQ    +P  G++ T    P++ +     +++   D       A E++ L  + ID + K +++   K+KA +RR+   +   K TH  RQE  Q  + EK
Sbjct:  114 VEGLVVLVILIYLVNYIIGKTTNSSIAHVVFEMCRPTLEEQFSVVGDDGITELDKHETQLRRDTDSTFSAWCSGRINVNSMFLQMKMLKRQDLVSRVMDIFDPSYDKMTIKIQLEGGNDVDPLIFAVGEKKIASKNFKEMFDLNSYVSERKQAAQQLNLPATWQLYADQNEVLFSILEPGVVSLLKKHEEAIEFIHISDQYTGPKPAEGESYTRLPDPQRFMFVSLNLKSLGQDE----ESATEILNLVFYLIDKVKKMKLSKDAKQKAEKRRKDFEEAFLKQTHQFRQEAAQARREEK 408
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BLAST of mRNA_F-serratus_M_contig1344.2555.1 vs. uniprot
Match: A0A1I7TFS3_9PELO (Uncharacterized protein n=2 Tax=Caenorhabditis tropicalis TaxID=1561998 RepID=A0A1I7TFS3_9PELO)

HSP 1 Score: 98.6 bits (244), Expect = 8.280e-19
Identity = 94/360 (26.11%), Postives = 161/360 (44.72%), Query Frame = 3 
Query:  156 IATASPTGDPTIDDEFTIETLYPEARTSAKEPAGDWSEDKVSMAGLLSLQWPRQGLRLGAVEYFALGTIILFLAVYLR----GRRRNYDIAHTFIRSVHSLFCARFLEAGPALETPPVDRRQLLARDSCSSFVYYATGSRSCSSVLVTISLTKRHDLFMLLWHLFNPVADTVTVEVGLGD-DDLEPLVFAVSQKRDAKKILEEIPHLQDYVGVTRSQS----LPSALACLSESSTLVEPLLPSAAVKTLTEYHDLLELMHFTDQ--NQQPILGQAVTPRKALRFRFRIEAAVGDRVGSMRGAV-EMIELALFYIDFLHKYQMAPGMKKKALERREAVAKRKAKLTHAQRQERFQQLKNEK 1199
            I + S T D   DD+F +     E    AKE     +ED+ +    L         R     Y   G ++L + +YL     G+  N  IA+T       +   +F   G    T        L RD+ S+F  + TG  + +S+ + +   KR DL   + ++F+P  D +T++V L   +D++PL+FA+ +K+ A K  +E+  L  +V   +  +    LP+     ++ + +V  +L    V  L  +   +E +H +DQ    +P+ G++ T R     RF        ++G    +V E+  L  + +D + K +++   K+KA  RR+       K TH  RQE  Q  K EK
Sbjct:    6 IYSPSVTKDDFEDDDFGVVDEQEEETEKAKETE---TEDQQTPVQPLKFTDVPAHFRSNWASYQVEGIVVLIILIYLFNYIVGKTTNATIANTVFEMCRPVLEEQFAVVGDDGTTELEKLEPSLRRDTDSTFSAWCTGRVNVNSLFIQMKTIKRQDLVSRVLNIFDPTFDKMTIKVSLETGNDVDPLIFAIGEKKVASKNFKEMLDLNSFVSERKQAAQQFNLPANWQLYADQNEVVYSILDPGVVSLLKRHEQAIEFIHISDQFTGPKPVDGESYT-RLPEPQRFMFVTLNLKQLGEDEESVTEIFNLVFYLMDKVKKMKLSKDAKQKAERRRKEFEDAFLKQTHQFRQEAAQARKEEK 361
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BLAST of mRNA_F-serratus_M_contig1344.2555.1 vs. uniprot
Match: G0MBY8_CAEBE (CBN-CCDC-47 protein n=1 Tax=Caenorhabditis brenneri TaxID=135651 RepID=G0MBY8_CAEBE)

HSP 1 Score: 96.3 bits (238), Expect = 7.560e-18
Identity = 79/296 (26.69%), Postives = 134/296 (45.27%), Query Frame = 3 
Query:  336 VEYFALGTIILFLAVYLRGRRRNYDIAHTFIRSVHSLFCARFLEAGPALETPPVDRRQLLARDSCSSFVYYATGSRSCSSVLVTISLTKRHDLFMLLWHLFNPVADTVTVEVGL-GDDDLEPLVFAVSQKRDAKKILEEIPHLQDYVGVTRSQS----LPSALACLSESSTLVEPLLPSAAVKTLTEYHDLLELMHFTDQNQQPILGQAVTPRK---ALRFRFRIEAAVGDRVGSMRGAVEMIELALFYIDFLHKYQMAPGMKKKALERREAVAKRKAKLTHAQRQERFQQLKNEK 1199
            VE   +  I ++L  Y+ G+  N  IAHT           +F   G    +        L R++ S F  + TG  + +S+ + + + KR DL   +  +F+P  D +T++V L G  D++P++FAV +K+ A K  +E+  L  +V   +  +    LP+     ++ S +V  +L    V  L  + + +E +H +DQ   P  G+  T  +   A R  F +   +           E++ L  + ID + K +++   K KA  RR+       K TH  RQE  Q  K EK
Sbjct:  119 VEGIVVLVIFIYLLNYIIGKTTNSTIAHTIFDMCRPSLEEQFALVGDDGSSELDKLEPTLRRETDSVFSAWCTGRVNANSLFIQMKMIKRQDLVSRILDIFDPSYDKMTIKVSLEGGQDVDPMIFAVGEKKIASKNFKEMLDLNSFVSERKQAAQQFNLPATWQLYADQSEVVFSMLEPGVVSLLKRHEEAIEFIHISDQYTGPKPGEGETYTRLPEAQRIMF-VSLNLKKLAEDEESVTEILSLVYYLIDKVKKTKLSKDAKVKAERRRKEFEDAFLKQTHQIRQEAAQARKEEK 413
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BLAST of mRNA_F-serratus_M_contig1344.2555.1 vs. uniprot
Match: A0A260Z8H7_CAERE (Uncharacterized protein (Fragment) n=2 Tax=Caenorhabditis remanei TaxID=31234 RepID=A0A260Z8H7_CAERE)

HSP 1 Score: 81.6 bits (200), Expect = 4.610e-13
Identity = 76/299 (25.42%), Postives = 137/299 (45.82%), Query Frame = 3 
Query:  336 VEYFALGTIILFLAVYLRGRRRNYDIAHTFIRSVHSLFCARFLEAGPALETPPVDRRQLLARDSCSSFVYYATGSRSCSSVLVTISLTKRHDLFMLLWHLFNPVADTVTVEVGL-GDDDLEPLVFAVSQKRDAKKILEEIPHLQDYVG----VTRSQSLPSALACLSESSTLVEPLLPSAAVKTLTEYHDLLELMHFTDQ--NQQPILGQAVT----PRKALRFRFRIEAAVGDRVGSMRGAVEMIELALFYIDFLHKYQMAPGMKKKALERREAVAKRKAKLTHAQRQERFQQLKNEK 1199
            VE   +  I+++L  Y+ G+  N  IAH            +F   G    T        L RD+ S+F      S  CS  LV+            +  +F+P  D +T+++ L G +D++PL+FAV +K+ A K  +E+  L  YV       +  +LP+     ++ + ++  +L    V  L ++ + +E +H +DQ    +P  G++ T    P++ +     +++   D       A E++ L  + ID + K +++   K+KA +RR+   +   K TH  RQE  Q  + EK
Sbjct:  114 VEGLVVLVILIYLVNYIIGKTTNSSIAHVVFEMCRPTLEEQFSVVGDDGITELDKHETQLRRDTDSTF------SAWCSGHLVS-----------RVMDIFDPSYDKMTIKIQLEGGNDVDPLIFAVGEKKIASKNFKEMFDLNSYVSERKQAAQQLNLPATWQLYADQNEVLFSILEPGVVSLLKKHEEAIEFIHISDQYTGPKPAEGESYTRLPDPQRFMFVSLNLKSLGQDE----ESATEILNLVFYLIDKVKKMKLSKDAKQKAEKRRKDFEEAFLKQTHQFRQEAAQARREEK 391
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1344.2555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LUC0_ECTSI1.090e-14659.28Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UXR9_9STRA4.710e-5139.24Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A8WVF4_CAEBR1.920e-2027.06Protein CBR-CCDC-47 n=2 Tax=Caenorhabditis TaxID=6... [more]
E3M8G4_CAERE5.010e-1925.75CRE-CCDC-47 protein n=3 Tax=Caenorhabditis TaxID=6... [more]
A0A1I7TFS3_9PELO8.280e-1926.11Uncharacterized protein n=2 Tax=Caenorhabditis tro... [more]
G0MBY8_CAEBE7.560e-1826.69CBN-CCDC-47 protein n=1 Tax=Caenorhabditis brenner... [more]
A0A260Z8H7_CAERE4.610e-1325.42Uncharacterized protein (Fragment) n=2 Tax=Caenorh... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1344contigF-serratus_M_contig1344:77037..82128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score437.6
Seed ortholog evalue6.5e-120
Seed eggNOG ortholog2880.D8LUC0
Preferred nameCCDC47
KEGG rclassRC00741,RC01491,RC01492,RC03042
KEGG koko:K04035
KEGG ReactionR06265,R06266,R06267,R10068
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005791,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006983,GO:0006984,GO:0006996,GO:0007029,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009607,GO:0009791,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0012505,GO:0016043,GO:0019538,GO:0019941,GO:0023052,GO:0030163,GO:0030433,GO:0032501,GO:0032502,GO:0033554,GO:0034976,GO:0036503,GO:0042221,GO:0042592,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051603,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0065007,GO:0065008,GO:0071216,GO:0071704,GO:0071840,GO:0072507,GO:0098771,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG2357@1,KOG2357@2759
Ec32 ortholog descriptionProtein of unknown function DUF1682
Ec32 orthologEc-14_004420.1
EC1.14.13.81
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size1359
Cds size1221
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1344.2555.1prot_F-serratus_M_contig1344.2555.1Fucus serratus malepolypeptideF-serratus_M_contig1344 77065..82018 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929320.085526-UTR-F-serratus_M_contig1344:77036..770641622929320.085526-UTR-F-serratus_M_contig1344:77036..77064Fucus serratus maleUTRF-serratus_M_contig1344 77037..77064 -
1690962797.685392-UTR-F-serratus_M_contig1344:77036..770641690962797.685392-UTR-F-serratus_M_contig1344:77036..77064Fucus serratus maleUTRF-serratus_M_contig1344 77037..77064 -
1622929320.215938-UTR-F-serratus_M_contig1344:82018..821281622929320.215938-UTR-F-serratus_M_contig1344:82018..82128Fucus serratus maleUTRF-serratus_M_contig1344 82019..82128 -
1690962797.7488012-UTR-F-serratus_M_contig1344:82018..821281690962797.7488012-UTR-F-serratus_M_contig1344:82018..82128Fucus serratus maleUTRF-serratus_M_contig1344 82019..82128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929320.1096663-CDS-F-serratus_M_contig1344:77064..770851622929320.1096663-CDS-F-serratus_M_contig1344:77064..77085Fucus serratus maleCDSF-serratus_M_contig1344 77065..77085 -
1690962797.7087426-CDS-F-serratus_M_contig1344:77064..770851690962797.7087426-CDS-F-serratus_M_contig1344:77064..77085Fucus serratus maleCDSF-serratus_M_contig1344 77065..77085 -
1622929320.1235266-CDS-F-serratus_M_contig1344:77344..775791622929320.1235266-CDS-F-serratus_M_contig1344:77344..77579Fucus serratus maleCDSF-serratus_M_contig1344 77345..77579 -
1690962797.7170672-CDS-F-serratus_M_contig1344:77344..775791690962797.7170672-CDS-F-serratus_M_contig1344:77344..77579Fucus serratus maleCDSF-serratus_M_contig1344 77345..77579 -
1622929320.1383023-CDS-F-serratus_M_contig1344:78511..791231622929320.1383023-CDS-F-serratus_M_contig1344:78511..79123Fucus serratus maleCDSF-serratus_M_contig1344 78512..79123 -
1690962797.7267559-CDS-F-serratus_M_contig1344:78511..791231690962797.7267559-CDS-F-serratus_M_contig1344:78511..79123Fucus serratus maleCDSF-serratus_M_contig1344 78512..79123 -
1622929320.1541297-CDS-F-serratus_M_contig1344:81665..820181622929320.1541297-CDS-F-serratus_M_contig1344:81665..82018Fucus serratus maleCDSF-serratus_M_contig1344 81666..82018 -
1690962797.7371347-CDS-F-serratus_M_contig1344:81665..820181690962797.7371347-CDS-F-serratus_M_contig1344:81665..82018Fucus serratus maleCDSF-serratus_M_contig1344 81666..82018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1344.2555.1

>prot_F-serratus_M_contig1344.2555.1 ID=prot_F-serratus_M_contig1344.2555.1|Name=mRNA_F-serratus_M_contig1344.2555.1|organism=Fucus serratus male|type=polypeptide|length=407bp
MERGACALFLLRAVMIATASPTGDPTIDDEFTIETLYPEARTSAKEPAGD
WSEDKVSMAGLLSLQWPRQGLRLGAVEYFALGTIILFLAVYLRGRRRNYD
IAHTFIRSVHSLFCARFLEAGPALETPPVDRRQLLARDSCSSFVYYATGS
RSCSSVLVTISLTKRHDLFMLLWHLFNPVADTVTVEVGLGDDDLEPLVFA
VSQKRDAKKILEEIPHLQDYVGVTRSQSLPSALACLSESSTLVEPLLPSA
AVKTLTEYHDLLELMHFTDQNQQPILGQAVTPRKALRFRFRIEAAVGDRV
GSMRGAVEMIELALFYIDFLHKYQMAPGMKKKALERREAVAKRKAKLTHA
QRQERFQQLKNEKLQKEREEYENLTPEQKRRRDLRDEKRAKKASANKKLK
MKMTRS*
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mRNA from alignment at F-serratus_M_contig1344:77037..82128-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1344.2555.1 ID=mRNA_F-serratus_M_contig1344.2555.1|Name=mRNA_F-serratus_M_contig1344.2555.1|organism=Fucus serratus male|type=mRNA|length=5092bp|location=Sequence derived from alignment at F-serratus_M_contig1344:77037..82128- (Fucus serratus male)
CAGGTATTTTGCATAAAGGAATTTTTTTAACACGAAGAGAGTCCAACGGG
CGACCGCCTTGAAGATACTGCTGTCTTAGCCTCGCAATCGAAGGAGAGAG
GAATGCAGCTATGGAACGAGGCGCTTGCGCGCTGTTTCTTCTCAGGGCGG
TGATGATCGCTACCGCATCCCCAACGGGGGACCCAACCATCGACGACGAA
TTCACGATAGAAACACTATATCCAGAGGCGCGCACATCAGCAAAGGAACC
TGCTGGAGACTGGTCTGAAGACAAGGTTTCGATGGCAGGTCTTTTGTCCC
TGCAATGGCCAAGACAAGGGCTACGGTTGGGTGCCGTCGAGTACTTCGCC
TTGGGCACCATCATCCTCTTCCTTGCTGTCTACTTGCGCGGCCGGCGTCG
AAACTACGATATCGCGCACACGTTCATCAGGAGCGTCCACAGCCTATTTT
GCGCTCGGTTCTTGTGAGTGAACCCGTGATAATGTATGGTCACACATAAT
TCTTCTTACTGGAGGATAGATGCTCAGAAGGTACACGCGTTTTGATTTTT
CTTTAAAAATAAATAATAGTGTATGGCTATTTGGCCCACCGGTGGGCTAT
TCTCTTGTTTACCCCCCCACCTGGATCTCGCGCCAGAAGACTTGGTTGGT
CTCAGTACATGCATGGGTGTGTTAGGGTTAGGGTTAGCTATTATCGAGTC
TATCGTGCAGCCCAAACGGTCCTGTCTACGTGCTACCACGGCCGGTGGAG
TGGTTGGTGTTTTCTGGTATGTATGGCTATTTGCCCTTACATACCAGAAA
ACACTAACCACCCCACCGGCCGTAACATCACGTAGACAGGACCATTTGGG
CTGCACGAATGACCCCATGATAGCCCTGCAACGCGCCAACACATTCATGC
ATGTATTGTGACCAACCGTGTCTTCTGACGCGAGATCCAGGTGATGGGGT
AAATTTGGGTATGGCCCACCGGTGGGGTAAATAGCCATTCCAAAAGAGTA
TGGATCAACCGGGTAAGGTTGCCAGTGTCCTGCACGTGGTCAGCTGAACA
GGAAAAATGAATATTTCCCTCTCCGCGCTCGCGTCTGAGAATTTGGTCTC
GCGAGACGGATTCGGCAGTCCCGTCCCGCGTCAGCCTGCTCATCTCCATA
CTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTTCCGAGTTCCGCGG
CGGCGTCCATTGATTCATTTATAACCGCCATACGCCATCGGGTCAGTCCC
GAGTCTATCGGGTCACGCAATTGCGTACCGATGGCAATCACTGCCGAGAG
TCCGCCGTCACGGGGCCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTG
CTTTGGCAGGTCACCATGGACCAATTAATATTCGCCTCTCCTTCCCACAC
CCACTATTGGTATGAAGTGGGCATGTTGAAAGTACCGGCGGTCTACAGCA
GTACCACTGTATCAACAGTACTCATAGCAACGAAGCACTATGTTTCTACC
CTACAGGTACAAGTGCCCCTCCTCCTTATATCCTTGGTAACTTCAGACGA
TAGAGACACCCCTCGCAGAGCGTCGCAGAGCGATGTCGATACAGCATAGA
CAATGGCCGTCTTGAACAGCACGAACGCTGAACCTACTCCCTGATTGTGC
GTTAAGGGCTTATTACAACGTCCTCTTCAGGGAGAAGCTTAGGAGCGCAT
CCTCAGCCGACCGTGCAAATATTTTCCAGGGCTCCGCGCGGTAAAGGTCG
GGACGGGACCGCGGGAAAAGTGATCGGGAACGGGACGGTACGGGAACGGG
AACGGTTGCGATATTTCCTTTCCCGACCGATGTTTCCCGACCTTTCCCGT
TACTGATTTATGTTCCCGCGTTTCCCGTCCAACCGCAAGATGAACTGTTC
CCGTCCCACTTCCCACTGTCTGTCCACTCACTTACCATCTCATTCCCGAT
TGTTGAATCGTTTTTCCCATCCCATATTTCACTAGAGTGTGATTTATCCC
AAACTCCCCTAATAAACAATAAACATTCGTACCAGCTGCTGTGTGGATAT
ATATACACATATAACCACGTGTAAAGTATAAAAAGATAACTAAATAATCA
CCCGGGCAGGTGTAAGACATACTCTATTTAGTGTATTATGGGATGTAATT
TATTTTTTACTTGAAGAAGTAATAATCAGCTTGTCGCTCGCCCGAGCACC
ATCCCTAGTGCATCCGAGACTCGCACGGACGCCGGACTTCGCGAGTTTAG
CGAATACATGGCAGAGGCGGCTCTCACCAACAACTCCGAGTTCGACCTTC
TCGAGTACTGGAGAGCGCGGGCCGTTGATGGGCTCGATGCATCAAGAAAG
GTTGTCGCGCCTGCCCGCTGGCCGCATCTGGGTTTGGTCGCGCGGGTGTT
CGCAGGAATCGACACAACAAGCTGCCAGGCAGAGAGGGATTTTTCTTCCC
TTAAATTGGTTGTGACCGACCTCCGCGCTAGTCCAGGAGTTGAAAAGATC
AGATCGAGAAGATTTTGTTCCTCAGGCTCAACAGCAATAGCAATAGCAAT
AGCCACCTTATTCCTGGATTGGGCAAGGTTAAGGTTGTCAAGAGAGTTGG
AGAGCTCGAAGGAAGAGCGCGACGGCGCTGCTGACGCAGCATTTATTTCC
AAGACCACTGCTGTAGCCAGCATTTGTTTCCCGACCGTTCCCGTCCCACC
GGGAAAGATGGGAATTGTATTGTAGCCAGCATTTGTTTCCCGTTCCCATC
CCATCCCGTCAACCTTCTGTGTTCCCGTCCCGTTCACATCCCGCGGTACT
CTAACGGGAACGTTTTCCCGTACCGTTGCTCGGGAAGACCCTAAAAAACC
GCTCCGCGCGGTACTTTCGTTACCGCGCGGAGCCCTGATATTTTTGCCAC
TATAACTAGTGCTAGCCTCCACGTTCCGAAGCTCAGTTTGTTTCTCACTT
TATAGCAGAGAACTTTGAACTGATCGTACGGCGCATCCCTTGCTTTCTTT
TTCAGGGAAGCTGGTCCAGCATTGGAGACACCACCCGTGGACAGGCGGCA
GCTCTTAGCGAGAGATTCTTGCAGCAGCTTTGTCTACTACGCCACGGGGA
GCCGTAGTTGCTCCAGCGTTTTGGTGACAATCAGCCTTACCAAACGGCAC
GACCTCTTCATGCTCTTATGGCACCTCTTCAACCCCGTCGCAGACACGGT
CACCGTGGAGGTCGGCCTCGGCGACGACGACCTGGAACCCCTGGTCTTCG
CGGTTTCTCAAAAGCGAGACGCGAAGAAAATCCTCGAGGAAATTCCGCAC
CTGCAGGACTACGTTGGTGTAACCCGCTCGCAATCCTTACCGTCAGCGCT
CGCTTGCTTGTCCGAAAGCAGCACCCTGGTGGAGCCTTTGTTGCCCTCGG
CGGCTGTCAAGACATTGACAGAGTACCACGACCTGCTGGAGCTCATGCAC
TTCACCGACCAAAACCAGCAGCCCATCCTGGGACAGGCGGTGACGCCCAG
GAAGGCGCTCAGATTCCGGTTTAGAATTGAGGCGGCCGTGGGCGACAGAG
TGGGATCGATGAGGGGGGCGGTCGAGATGATCGAGCTCGCTTTGTTCTAC
ATCGACTTCTTGCACAAGTGAGAGATGCGAAATTATTACCTTCCAATTCT
GTATGTAGAACGGGGGGGTCATGGTTAACTAACTCTCTTGAGTCCTTCTT
CTCTCTCGCTGAGTGTACAGCAACTCGACCGCGGTTGTCTACGTCGCCTA
CATAATGTATGGTCATCACATATAGCAGAGTATGGATCAACCGTGTAAGG
TTGCCAATCCTGCTCGTGGTCAGCTGAACAGGAAAAATGAACAATCCATA
AGAGCCCAATCATACGGAGTAGTAAACATTGCCTGTGCTTTCAACATGCT
ATAATCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGAATATTAA
TTGGTCCATGGTGACCTGCCACCGCAGCACCCGTTTGGAACTATGTTGGT
GTTTACTGGCCCGGTGCCGGTGGACTCTCGGCAGTGAACGCCATCGGTAC
GCAATTGCGTGACCCGATAGACTCGGGACTGGCGCGATGGCGTATGGTGG
TTTGAATAAATATATGGGCGCCGCCGCGGAACTCGGGAGGAATCCCGTAA
GTAAGCACCAGATTTAGCCTGAGCATGGAGATGAGCAGGCTGACGCGTGA
CGGGACTGCCGAATCCGTCTCGCGAGACCAAATTCTCAGGTACGAGCGCG
GACAGGGAAATATTAATTCATCCTGTTCAGCTGACCACGTGCAGGACACT
GGCAACTTAACCCGGTTGATCCATACTCTTGCTATATGTGACGACTATAC
AACGCCTCCGCGCGCGTATTGGAAATCTGTCAAACTGTATAGTTTGCGTC
GCTAATGAATTACCTACTGTGTATGTTCTGCCAACAACGCAGGCTTTCGG
TTGCGTGTACGGTTCCCAGCCGCCGCAGGTGTTGCCGATGTTTCCTCGTC
ACTTCATTCGCCGCATCATGATCGTAGCGTTTCGCTCCACGGGAACCAGG
TATCAGATGGCGCCTGGGATGAAGAAGAAGGCGCTCGAGCGGCGGGAAGC
CGTCGCGAAGCGCAAGGCCAAGTTGACGCATGCGCAGCGGCAAGAACGCT
TCCAACAGCTGAAAAACGAGAAATTGCAGAAGGAGCGGGAGGAGTACGAG
AACCTGACGCCGGAGCAGAAGCGTCGACGCGACTTGAGAGACGAGAAGAG
AGCAAAAAAGGCCTCCGCCAACAAAAAACTCAAGGTAAAAGGCTAATGGC
ACAAATGAGTGGCAGCCTTCGCTTCGAGACTCGCCAGCCTAATTTGCCTC
TCTATCCCGCCTCCATTTCACCTCGAGGTAATGGTGCGCCGAAGCGGGCG
TTCATCGCAGGTGAGTGGTAGGTGCAACTTAATATCGTGTTGCGGGTTTC
GCCTCGGGCTGGCACGACAGGACGTTGGACATTTCCCCCTGGCTGTTGTG
TCCGTGTACTTACGGGTTCACTTCGCGTTCCGTGGCGGCGCAGATGAAGA
TGACGAGATCCTGAAAACGAAGGCAAACGGGACCGGTGGCTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1344:77037..82128-

>mRNA_F-serratus_M_contig1344.2555.1 ID=mRNA_F-serratus_M_contig1344.2555.1|Name=mRNA_F-serratus_M_contig1344.2555.1|organism=Fucus serratus male|type=CDS|length=2442bp|location=Sequence derived from alignment at F-serratus_M_contig1344:77037..82128- (Fucus serratus male)
ATGGAACGAGGCGCTTGCGCGCTGTTTCTTCTCAGGGCGGTGATGATCGC
TACCGCATCCCCAACGGGGGACCCAACCATCGACGACGAATTCACGATAG
AAACACTATATCCAGAGGCGCGCACATCAGCAAAGGAACCTGCTGGAGAC
TGGTCTGAAGACAAGGTTTCGATGGCAGGTCTTTTGTCCCTGCAATGGCC
AAGACAAGGGCTACGGTTGGGTGCCGTCGAGTACTTCGCCTTGGGCACCA
TCATCCTCTTCCTTGCTGTCTACTTGCGCGGCCGGCGTCGAAACTACGAT
ATCGCGCACACGTTCATCAGGAGCGTCCACAGCCTATTTTGCGCTCGGTT
CTTATGGAACGAGGCGCTTGCGCGCTGTTTCTTCTCAGGGCGGTGATGAT
CGCTACCGCATCCCCAACGGGGGACCCAACCATCGACGACGAATTCACGA
TAGAAACACTATATCCAGAGGCGCGCACATCAGCAAAGGAACCTGCTGGA
GACTGGTCTGAAGACAAGGTTTCGATGGCAGGTCTTTTGTCCCTGCAATG
GCCAAGACAAGGGCTACGGTTGGGTGCCGTCGAGTACTTCGCCTTGGGCA
CCATCATCCTCTTCCTTGCTGTCTACTTGCGCGGCCGGCGTCGAAACTAC
GATATCGCGCACACGTTCATCAGGAGCGTCCACAGCCTATTTTGCGCTCG
GTTCTTGGAAGCTGGTCCAGCATTGGAGACACCACCCGTGGACAGGCGGC
AGCTCTTAGCGAGAGATTCTTGCAGCAGCTTTGTCTACTACGCCACGGGG
AGCCGTAGTTGCTCCAGCGTTTTGGTGACAATCAGCCTTACCAAACGGCA
CGACCTCTTCATGCTCTTATGGCACCTCTTCAACCCCGTCGCAGACACGG
TCACCGTGGAGGTCGGCCTCGGCGACGACGACCTGGAACCCCTGGTCTTC
GCGGTTTCTCAAAAGCGAGACGCGAAGAAAATCCTCGAGGAAATTCCGCA
CCTGCAGGACTACGTTGGTGTAACCCGCTCGCAATCCTTACCGTCAGCGC
TCGCTTGCTTGTCCGAAAGCAGCACCCTGGTGGAGCCTTTGTTGCCCTCG
GCGGCTGTCAAGACATTGACAGAGTACCACGACCTGCTGGAGCTCATGCA
CTTCACCGACCAAAACCAGCAGCCCATCCTGGGACAGGCGGTGACGCCCA
GGAAGGCGCTCAGATTCCGGTTTAGAATTGAGGCGGCCGTGGGCGACAGA
GTGGGATCGATGAGGGGGGCGGTCGAGATGATCGAGCTCGCTTTGTTCTA
CATCGACTTCTTGCACAAGGAAGCTGGTCCAGCATTGGAGACACCACCCG
TGGACAGGCGGCAGCTCTTAGCGAGAGATTCTTGCAGCAGCTTTGTCTAC
TACGCCACGGGGAGCCGTAGTTGCTCCAGCGTTTTGGTGACAATCAGCCT
TACCAAACGGCACGACCTCTTCATGCTCTTATGGCACCTCTTCAACCCCG
TCGCAGACACGGTCACCGTGGAGGTCGGCCTCGGCGACGACGACCTGGAA
CCCCTGGTCTTCGCGGTTTCTCAAAAGCGAGACGCGAAGAAAATCCTCGA
GGAAATTCCGCACCTGCAGGACTACGTTGGTGTAACCCGCTCGCAATCCT
TACCGTCAGCGCTCGCTTGCTTGTCCGAAAGCAGCACCCTGGTGGAGCCT
TTGTTGCCCTCGGCGGCTGTCAAGACATTGACAGAGTACCACGACCTGCT
GGAGCTCATGCACTTCACCGACCAAAACCAGCAGCCCATCCTGGGACAGG
CGGTGACGCCCAGGAAGGCGCTCAGATTCCGGTTTAGAATTGAGGCGGCC
GTGGGCGACAGAGTGGGATCGATGAGGGGGGCGGTCGAGATGATCGAGCT
CGCTTTGTTCTACATCGACTTCTTGCACAAGTATCAGATGGCGCCTGGGA
TGAAGAAGAAGGCGCTCGAGCGGCGGGAAGCCGTCGCGAAGCGCAAGGCC
AAGTTGACGCATGCGCAGCGGCAAGAACGCTTCCAACAGCTGAAAAACGA
GAAATTGCAGAAGGAGCGGGAGGAGTACGAGAACCTGACGCCGGAGCAGA
AGCGTCGACGCGACTTGAGAGACGAGAAGAGAGCAAAAAAGGCCTCCGCC
AACAAAAAACTCAAGGTATCAGATGGCGCCTGGGATGAAGAAGAAGGCGC
TCGAGCGGCGGGAAGCCGTCGCGAAGCGCAAGGCCAAGTTGACGCATGCG
CAGCGGCAAGAACGCTTCCAACAGCTGAAAAACGAGAAATTGCAGAAGGA
GCGGGAGGAGTACGAGAACCTGACGCCGGAGCAGAAGCGTCGACGCGACT
TGAGAGACGAGAAGAGAGCAAAAAAGGCCTCCGCCAACAAAAAACTCAAG
ATGAAGATGACGAGATCCTGAATGAAGATGACGAGATCCTGA
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