mRNA_F-serratus_M_contig134.2534.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig134.2534.1
Unique NamemRNA_F-serratus_M_contig134.2534.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig134.2534.1 vs. uniprot
Match: D7G2H7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H7_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 1.040e-47
Identity = 100/127 (78.74%), Postives = 109/127 (85.83%), Query Frame = 1 
Query:    1 MAFKAFVLLMALCLVSMASGFVAPTGFARSVAIKQAVQMSXXXXXXXXXXXXXXXXXXX-VCAPLASYAAEQSSVLAQLPTELLADNGTATLAIVVGMFIPCSFLITLYFGTEQKKAGLIEGQNMPK 378
            MAFKAF +L+ALCLVS+ASGFVAPT  AR+VA+KQAVQMS        XXXXXXXXXX  VC+PLAS+AA+ SS LAQLPTELLADNGTATLAIVVGMFIPCSFLITLYFGTEQKK G+IEGQ M K
Sbjct:    1 MAFKAFAVLVALCLVSLASGFVAPTAVARNVAMKQAVQMSAKSSLPAAXXXXXXXXXXAAVCSPLASFAADPSSALAQLPTELLADNGTATLAIVVGMFIPCSFLITLYFGTEQKKKGVIEGQEMNK 127
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2H7_ECTSI1.040e-4778.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig134contigF-serratus_M_contig134:552653..560463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_005530.1
Exons2
Model size387
Cds size387
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929317.2491574-CDS-F-serratus_M_contig134:552652..5527431622929317.2491574-CDS-F-serratus_M_contig134:552652..552743Fucus serratus maleCDSF-serratus_M_contig134 552653..552743 +
1690962796.395219-CDS-F-serratus_M_contig134:552652..5527431690962796.395219-CDS-F-serratus_M_contig134:552652..552743Fucus serratus maleCDSF-serratus_M_contig134 552653..552743 +
1622929317.2633228-CDS-F-serratus_M_contig134:560167..5604631622929317.2633228-CDS-F-serratus_M_contig134:560167..560463Fucus serratus maleCDSF-serratus_M_contig134 560168..560463 +
1690962796.4055076-CDS-F-serratus_M_contig134:560167..5604631690962796.4055076-CDS-F-serratus_M_contig134:560167..560463Fucus serratus maleCDSF-serratus_M_contig134 560168..560463 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig134.2534.1prot_F-serratus_M_contig134.2534.1Fucus serratus malepolypeptideF-serratus_M_contig134 552653..560463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig134.2534.1

>prot_F-serratus_M_contig134.2534.1 ID=prot_F-serratus_M_contig134.2534.1|Name=mRNA_F-serratus_M_contig134.2534.1|organism=Fucus serratus male|type=polypeptide|length=129bp
MAFKAFVLLMALCLVSMASGFVAPTGFARSVAIKQAVQMSAQSGLPTAVP
AAAAVAAASVCAPLASYAAEQSSVLAQLPTELLADNGTATLAIVVGMFIP
CSFLITLYFGTEQKKAGLIEGQNMPKKK*
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mRNA from alignment at F-serratus_M_contig134:552653..560463+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig134.2534.1 ID=mRNA_F-serratus_M_contig134.2534.1|Name=mRNA_F-serratus_M_contig134.2534.1|organism=Fucus serratus male|type=mRNA|length=7811bp|location=Sequence derived from alignment at F-serratus_M_contig134:552653..560463+ (Fucus serratus male)
ATGGCTTTCAAGGCGTTCGTTCTGTTGATGGCTCTGTGTCTGGTATCGAT
GGCTTCGGGCTTCGTAGCGCCGACGGGATTCGCACGGAGTGGTGAGTGGA
CATCTATGAGAGCCGCATGTTTTCCCGGGTCACTTCCTCTATGTACTGAT
TGTAGTGAAATCCAGAGATCGGTAATTGCGCCGTGATAATTGGTATCGAT
TCCATCGGCCTGCCGAGCTAGTAGCTGCTTCAGTATTGAGTATTTGTGTG
ATATCGAGGGACTGTTTTCGTCCGTGACTAGGTGTTTGCCTTTCGCTGGG
AGCAGTGTCAGTTCCGGCTTTGAGTTTTCTTGCATGCACAAAACATGAAA
AAATCAGTCTTCCCTCTACGAGTACGCACCGGTGCTGTAAGTACAAATCT
TATCATTACAGATTACAGTACTGCACAACACATTTAGTATCAAAACCAGG
ACCTGTAATCCTGGTACTGCAGACAGTGTGTATTATATACTTAGTCTACT
GCTGTAGGCTTTACATTATTGTACATGTTCAGAATTTCAAGCAGAGTATG
GGTCAACGGCGGTATGGTCGCCAATCCTGCCTGTGGTCAGCTGGACAGGG
AAAATGATGGGTTCTCTGTCCCCGTTCGCGCCTGAGAGTTTGGTCTCGTG
AAACGGGTCTGGCCGTCCCTTCCTGCGTCAGTCCGCTCATTCTCCACACT
CGGGCTGAATCTGCTGCTTACTCACGGGATTACTCCTACTTTCCGCATTA
ATAGTGTCTGACTCCTCTCCTCCCCCGAAGTATTTATACAGTCCAGTACT
GTAGGAAGCGTACTACTCCTGTACTAGCTGATGTATGTAGTACACAACTC
GGGAGGAATTCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGA
GCAGGCTGACGCGGGACGGGACTGCCGAAACAGTCTCACAAGACAAAATT
CTCAGGCACGAACGCGGACAGGGGAATATCCTTTTCCCTGTTCAGCTGAC
CACGAGCAGGATTGTCAACCTTACCAGGTTGATCCATACTCTTGCTATAT
GTGTGACCATACATACATACATGAGCTTCAAACATGCTCAGGAGGTTTAG
CTGCGCTCAGATTTTTTCTTTTTCAAGTACTTCTGTGCCGCTGTAGGAGG
TTTGCAGTGTTACAAGAGCAGTCCTTGAAGATTGGAGCCTTGTTAATCGC
ATGTGTTTCCTCTCTCATCCGCAAGCCTGAGTCACCCCTCGATTTCCCCT
CAGTAGCTCAACATAGAATGCTGTAGTAGCAGCTGCAAACAGACAGCCCC
AGTTGTGAAGTGTGGCGATGGTTCATACAAATTACAGCCTCGCACGTATG
TGTCCATGTACCGATTGTCTTGGAACCCGTGGATTATGAGCGTGGGTGCG
CTCAAACCTGGCTCACGTCTAGCTTGGCGAATTCTTGCGGATCGGTATTT
TAATTGTCGGCCAAACCACTGGACTACTGCGACATATTCATATTCAAGAT
ACTACTTGCTTGTACTTGGTAGATCGGCAGCCTCCAGGGCAAACGTGTAA
ATACGTTGGAACTCTGAAGTAGAGACAAGCGAGAAGTGCTCTGGAGCCCG
CTATAAAATCTTAGGTCATACAGAAGAAACCGTTTCATGAAGGATTAGAT
TCAGCATGTGTAATGGGAAGGCCGAACGAGCACATAAAGACAGATCAGAA
GGTCTATAATACGTGCATTCATATTTTTCTTTAAACAGTATGAATAGTAG
AATCATCGCAAATGTTTACTTCCGTTACACATCAGATCTATTAAGAAAAT
CTGAACCCATCCAGACCTTCTGAGCATCCCCCAGTCAGGGGGGAAAATGT
CAAAACGTTTAGGTGGGATCATAGGCTGCAAATACAAAACCTCTCCATGG
CATTTAAACGGGTTCTCAGATGGTGGTAACATTGGATCAACAGTGATATT
AACGGGGAGAAACCCACCGTTATGATGTACACCTACATAAGTCGCCGTGC
AGGGACACCAGACAAAAAGCAATAACAGAAACATTTTTAGTACATAATAA
AATAGGTTTATAATAATATACCAGGTACAGTAATAGTGCCATCGACCCTT
ACACAAAAATAAGGTCTTACAGAGTAAGCAGTGTACCTAGTATTGTAATT
GGTGAAGAGGAATACATTTACATTTTGCAATACGTCCGCAGGGACATTCT
ACTACCGGTAAGTGTATGAAATGGTTGTTTCATAGGCTAAAGTTACAACC
CCTTCATGGCATTACTTTCCTATTAACATTAATCGCCATGCAGGGACACC
AAAACACAACAAATACAAAAGGCGCGATAAGCTAGGATACAGCTCATTTT
GTTGCATTGGGTCTGAGATCGGATGGGTGTGTTACGGTACCTGCTTGTGG
ACCGGAAGGGATACGAAGGTCAATCGGACGCCCCTCTACTGGCTCCTCCC
GTGATCGAAAATCGAGACAAAATTCAAAATTCTCGTCAGATCCAGCAACC
AAAAGAGGAAAATCCTGAAACTTTGTCCAAGAGCTAAGACAAATTGGGGT
TTAGCTTTAGCGTCTACAATCTGGAACGCTCCTTGACAAAGAGTCCAAAA
AGGCACTCGTACAAGAAAAGCTACTCCCTTCCCCACCAATTATGGCAACG
ACGTTTGACTCGTGAGCCGAGGGGATGAAGGGAAATACGAACTTGAACCC
ATCATTTAAGGCTGTACCAGTAGTAAACACAGTAGGAGAATAGAGGATAG
AGAGCGCAAAAGCAAAGCTGCTGTGTCCTTCCTGTATAATTATCTTGCCT
ACAGAGTACCGTACTGTACCAGTAGTACCAGTATGGACTTTGTAGGGCAA
ACAATATTAATAGTGGACTATTGATAGACTCGTACGGCCTATATAGCTAT
ATAGTACGTAGCGCTTATGTGGAGTACAAGAAGTAGCTAAACTCTCTTCA
GATTATGGATGTTTATTTAGCTCTACCTGTTACTTATTATGGTGACATTG
AGGGGTTTTCTCCTACCAAATATGTTTTCTCTCTAAACAAGACACTAATA
TAGTGGTAACAGTAATAATCGTGTTTTAAGGGCCATGCCATATGGCGGGG
GGAGGGCGCTGCCAGACCTTGATATTACTACGAGAAGCGTTTTTTTTTCG
TAGTTCAGCTAACCACAAGCGGGGTTGAAGGCAAAACGACATACTGTACT
CTACTGGTATAGTATACTTGAGGCGAGCAGTATGCGTGTATTAATCGTGT
AGACTTGGCTGCTTCTCCTTCGAAGATTCTGCGGTAGCCTGACCCCGCAT
CAAGCAAGTCAAAAACTTTTGACAACAAAAATGCCGATACAGTTTACCTG
GTGATTACTCGGCAACCATCCGTTGCTTCGCTAATCATGTGTATCTAACC
AAATCCCCCGTACATGAAACTTCATTCGATTAAGGCTGCTATCATGATAA
TAGTATGTTTTGCTGGCTTTGGTGTACCCCGCATCAGGCAAGTCAAAAAC
TTTGGATAACAAAAATGCCGATACAGTTTCCCCTGTTGATTACTCGGCAA
CCATCCGTTGCTTCGCCAATCATTTGTATCTAACCAAATCCCCCGTACAT
GAAACTTCATTCGATTAAGGCTCCTATCATATTAATATTAATAGTATGTT
TTGCTGGCTTTGTGTGTACCATGGACCCACTTGGCGATCAGTGTAACTGC
GCAAAATTATAATGGATCGTTCCTCGATATATCGCCGTTACTTTCAACAT
GCCCACTTCGTACCAATAGTGGGTGTGGGAAAGAGAGGCGTATATTAATT
GGTCCATAGTGACCTGCTAAGGCAGCACTCGTTCGGAACTACCTTGAGGC
TTACCGGCCTTGTGCCGACGGACTCTCGGCAGTGAACGCCATCGGTACGC
AATTGCGTGACCCGATAAACTCGGGACTTACCCGATGGCGTATGGCGGTT
TAATATAAATATATGGACGCCACCGCAGAACTTGGGAGGAATCCCGTAAG
TAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGAC
GGGACTGTCAAACCCGTCTCGCGAGACCAAATTCTCAGGCACGAACGCGG
ACAGGGGAATCTTATTTTTCCTGTTGAGCTGACCACGAGTAGGACTGGCA
ACCTTACCAGGTTGATCCATACTCTTACTATATGTTGACCCTGTGCGAAC
AACTTTGGCAACCCAAGTAGAATCCCCTGTGGCGAGTTTTTGTTCGAATC
ATCCAATGTTTTTAACTTTTAATTAACCAATGTTTCCAACTAACAATAAA
TCGATGTCTCCAACTATTAGACGAGTGAGCCTAAGTTCCAAACTGTTAAT
AAAACAATGCTTCCAACTACAGTATTAATTAACCAGTGTTTCCAACTATT
AATCCAACTATTAATGAACCAATGTTTCCAACTATTAATAAGCCAATGTT
TCCAACTATCAATAAACCAATGTCTCCAACTGTTAATAAACCTTTCGAAA
AACACACCCCGCAGTGTGGATTCTCGGGACGTTAAGATGCGTTTATTTTT
TCGTTAAGCAGATTTGCATACAGGTACACCAGGGTAACCTGTCTCATCTA
TTTTGTTGGAATACTTCGGAACCGCACCAACCCTATGGGGCGATTAATGT
GCTGCATGTGTACTAGTAATACTATGCTACTGTCGACCCTATACTAATAA
TACAATTGGGGAACTCGCTTAAATCTTGTGACGAGTTTGTCCTTGCAGCC
AGTTTCCTACCCATTGAAAATAGACGTTTTGACATTTCCCGCCCTGACTG
GGCGGATGCTATTATTAATAGAGTGATCCAGCGGTATTGATGTATATACG
GTCATCACATATACAGTAGCAATAGTAACGATCAACTGGGTAAGGTTGCT
CATCCTGCTCGCGGTCAGCTGAGCAGAGAAAAATGATATTTCCCTGTCCG
CGTTCGCGCCTGAGAGTTTGGTCTCGTGAGACGGGTTCAGCAGTCCCGTC
CCGCGTCAGCCTGCTCATCTCCATACTCGGGCTGAATCTGGTGCTTGCTT
ACGGGATTCCTCACGAGTTCCGCAGTGGCGTCCATTTATTTATTCAAACC
ACCATAGACTGCGCCATCGGGTCAGTCCCGAGTTTATCGGGACACGCAAT
TGCGTACCGATGGCGTTCCCTGCCGAGAGTCCGTCGGCACAGGGCCAGTA
AACCTCAAGGTAGTTCCAAACGGATGCTGCCTTGGAAAGTCACCATGGAC
CAAATAATACAGGAAGTACACTATTAATAGATTAATAGTCGAGTTGTAGG
AATACTGTAACTCTAAACGCTTATCATCTCCGCCCTTTTTATTTCACATG
GACGGTCGTCAAACAACTGAATACCGACCTCCCTACCACCTATGGATAAC
CTAAGTTGGTTGTGACGGTGCCGATGAGTGCCTACACTGCTTCTTCTTCA
AAATTGTTTGTGATGTTCATGATCTCTGAGAAGCTCTGTTAGACCGAGGG
TTTAAAGAAAAAAATGAACGCATCGAAACCTTTTGAACGTGTCACAAGGT
TTAGGGTGGGAACATTGGCTGTAGGGACAAACGCTCTTCATGGGTTCAAA
AGGTTTCGATATTATGCTGCAGACCTTTTCTGGTGATCTAGATGGGTCCT
CCCTCGCTTCCCAAGCCTGGTGTGAAACCATCGCGTCGGGATGATGCAAA
ATTACGCGGTGCCGAAGGGAGGGACTTGTGCCAGTCCAATTGATTAAAGT
TGGTTAGTTTTCATTTATTCGTCATGAAGAATGTTTACCAGTCCCAGCCC
TTTTCCTGTAACCCAATCAATTTTCCCCCTTGATTTATTTCAATATTTCA
GTATCACTCCAGAACATCCCTTGGCGGTGTGGTGGTTCCTTAGGTATTGC
AGAGGAGGATCATGCAATCACTCAGCAGCATGCAAGCGAAAGAGTACGGC
GCTGGAAAACACGGTATTGTACTGTAGCAGAAAACGTTTTAACGCCAGAC
ACCAGCATCCAGGGATATTTTCAAGTACACCCGTAGTCGTCGTCTCAGTA
CCGTGCGTCGCTCCCGTGCCTGTCCACAGTAGTTGTTGATCGGAATCAAA
ATGTCTAGGCGAGGGGGGGGGGGAGGTCTCGATTACTCTCGCGTACCCTC
TGTATTCGACGCGCACATCCGGCGTTGCTGCTTGGTTGACATGTTCGTGC
TTCTGCGGAAGTAGTTAGAAGGATAGAGATTCGAGAGCACAGGGCTTCTG
CAGAGGCATCACCACTGCGACCGAGGCAAATATAAGAGAGTGGAGAAAGA
TACTTGAGTGACGACGGAAGTCCGAGCCTCGATGGAGAAGTGAAGCACCC
CGGTATTGCGCGCCTCCAGGCCCGACTGCGTGATGGGAGCGTAATGGTTT
TCGATCTCTCCTGAACTCCAGGCTTCTGGCGCCGGCATTTATTCCAAGCT
CCAAGTCTCTCGCTGTCCCTCAGTTCCACAACGAGCATCGCAGCGTCCGT
AGTTACCTCACTGTAAAGCCTATTCGCCATGATAGCCGCTACGAGGGGCC
GTGCACAGCCTCCTGCTCCGTGTGGAGGGACTCTATCAAGCATTATAACG
CTTTTTGTTGTTGCACTCGTGGTCAAGCCTCAACTCCGATGTCAATTGAA
ATACAGACAATGCCGCAGGACCTCCTGAGTCCGCGCAAGGCCAACCAAGG
TTCTGGGTTTGCCCGCCCCCGGAGCTTGGGTTGCTGTAACTACTGTATAG
CAGAAAGAGTTTAAGGAACCCCCTCCCCCCCCCTTCCGTCGATATCTTCC
TGAAGGACTGCGCGCATGCCTTTGGTGTCAGTTTCGTTCACAACTGGCAA
TGGGGTTAGGCACCACACGAATTTGATGTCTGATCAGAGGCCGGCGACAA
ATGTCTTGTATTCTAGAAAACGTAACCATGGTTTCCATTCCGACGAATTA
TCGGCTTTAGTAACACGATCGTTCGCCGACACAAATCATCGAAACGTGCT
CAAATGGACGAGAGAGGCAAACGAAAAAAAAACTCAGGCTTCAACCGCAG
AGCGGTAGAAACACGTATCACAGCAATGTCAAGGGCGAGACGGAGGGCTT
CAAGCCGGCGAACGCCAGGACGGCGCAGCTATGAGCCTTATGTACTTGAT
GACCCTTGAAAATGATGTTGAGATAAATTCGTGCTCGTGAACAAAAGCAC
AGTGTTGTCATGGGGGCTCCAGTGTTTCAGGGTGCGCAGTTATGGGTCTT
ATGTACTTGATGGCCCTTAAAAATTATGTCGAGACAAATCCGTGCTCATG
AATAAAAGTAGTTTTGTCGTGGGGTTTCCAGTATTTTGTAGATGGCTCGC
CCTGGTCTGGGACCTTGTTGTGTCCTTTGAAACGCTCAAATACTACACGT
TTTAATATTGCGCCCCCCTCTGTCGGCCCCTTGCTTCGGCTTCTTTTCCC
TTGTGCTCCCATGACCCGTGATTTTGTCCGCGGGAAAAAAATGTTGTGCC
GTGTGTGTCACCCAGTGGCGATAAAGCAGGCAGTGCAGATGAGTGCGCAG
TCCGGCTTGCCGACGGCGGTGCCCGCTGCGGCAGCGGTGGCAGCTGCCTC
CGTCTGCGCACCGTTGGCTTCTTACGCGGCGGAACAGTCCAGCGTGCTCG
CCCAGCTGCCCACCGAGTTGCTGGCGGACAACGGGACCGCCACTCTGGCC
ATCGTAGTGGGCATGTTCATCCCGTGCTCGTTCCTCATCACCCTTTACTT
CGGCACCGAGCAGAAGAAGGCGGGGCTCATCGAGGGCCAGAACATGCCGA
AGAAGAAGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig134:552653..560463+

>mRNA_F-serratus_M_contig134.2534.1 ID=mRNA_F-serratus_M_contig134.2534.1|Name=mRNA_F-serratus_M_contig134.2534.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig134:552653..560463+ (Fucus serratus male)
ATGGCTTTCAAGGCGTTCGTTCTGTTGATGGCTCTGTGTCTGGTATCGAT
GGCTTCGGGCTTCGTAGCGCCGACGGGATTCGCACGGAGTGATGGCTTTC
AAGGCGTTCGTTCTGTTGATGGCTCTGTGTCTGGTATCGATGGCTTCGGG
CTTCGTAGCGCCGACGGGATTCGCACGGAGTGTGGCGATAAAGCAGGCAG
TGCAGATGAGTGCGCAGTCCGGCTTGCCGACGGCGGTGCCCGCTGCGGCA
GCGGTGGCAGCTGCCTCCGTCTGCGCACCGTTGGCTTCTTACGCGGCGGA
ACAGTCCAGCGTGCTCGCCCAGCTGCCCACCGAGTTGCTGGCGGACAACG
GGACCGCCACTCTGGCCATCGTAGTGGGCATGTTCATCCCGTGCTCGTTC
CTCATCACCCTTTACTTCGGCACCGAGCAGAAGAAGGCGGGGCTCATCGA
GGGCCAGAACATGCCGAAGAAGAAGTGATGGCGATAAAGCAGGCAGTGCA
GATGAGTGCGCAGTCCGGCTTGCCGACGGCGGTGCCCGCTGCGGCAGCGG
TGGCAGCTGCCTCCGTCTGCGCACCGTTGGCTTCTTACGCGGCGGAACAG
TCCAGCGTGCTCGCCCAGCTGCCCACCGAGTTGCTGGCGGACAACGGGAC
CGCCACTCTGGCCATCGTAGTGGGCATGTTCATCCCGTGCTCGTTCCTCA
TCACCCTTTACTTCGGCACCGAGCAGAAGAAGGCGGGGCTCATCGAGGGC
CAGAACATGCCGAAGAAGAAGTGA
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