|
|
Homology
BLAST of mRNA_F-serratus_M_contig134.2531.1 vs. uniprot
Match: D7G2H6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H6_ECTSI) HSP 1 Score: 129 bits (323), Expect = 7.010e-28 Identity = 81/209 (38.76%), Postives = 108/209 (51.67%), Query Frame = 1
Query: 190 PSIPRAFLRGIKRRGASLSALFGLGGSDSSENAREQEEDKNYVDESRRDGTS------------------VPDDVGG-------------------------FNATSSKTXXXXXXXXSDCSGSPPLVVLEVDQISFEVSRKEPRQALLASIRKLDEHPGDVTYGQAMGGWGKLSTSSFTLFLDNLPVPFLSVESVVWEGLFARAALIG 687
P PRA +G+++ GASLS+L G G S S + + N +RR TS VP+ GG + T S + + + PL VL + +ISFE+SRKEP+ LLA++R+LDEHPG VTYGQAMGGWGKLS SS ++LD LPVP+L+ ++VV +GLFAR L G
Sbjct: 1279 PQHPRAIFKGLRQSGASLSSLLGFGSSGSGSDLSDHGGGDNARPTTRRSSTSPAATGADTPKRRSKRITQVPEGEGGDEEGGVGDGRGFGIDTNRGRNVGDRVSETESARKARGDGFGGNEARAKPLAVLTLGEISFELSRKEPQPTLLAAVRELDEHPGPVTYGQAMGGWGKLSLSSTAVYLDGLPVPYLTADNVVVDGLFARGKLYG 1487
BLAST of mRNA_F-serratus_M_contig134.2531.1 vs. uniprot
Match: A0A6H5L9Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y5_9PHAE) HSP 1 Score: 105 bits (263), Expect = 2.610e-20 Identity = 74/211 (35.07%), Postives = 101/211 (47.87%), Query Frame = 1
Query: 190 PSIPRAFLRGIKRRGASLSALFGLGGSDSSENAREQEEDKNYVDESRRDG------------------TSVP-----DDVGGF--------------------NATSSKTXXXXXXXXSDCSGSPPLVVLEVDQISFEVSRKEPRQALLASIRKLDEHPGDVTYGQAMGGWGKLSTSSFTLFLDNLPVPFLSVESVVWEGLFARAALIGTD 693
P PR ++G+++ GASLS+L G G S S + + N SRR T VP D+ GGF + T S + + + PL VL + +ISFE + LLA++R+LDEHPG VTYGQ MGGWGKLS SS ++LD LPVP+++ ++VV +GLFAR D
Sbjct: 1591 PQHPRMMVKGLRQSGASLSSLLGFGSSGSGSDLSDHGGRDNARSTSRRSSASPAATGADTPKRRSKRITQVPAGEGGDEAGGFGDGRGFGIDKNRGRNVGDRISETESAREARGDGFGGNEARAKPLAVLTLGEISFEPT-------LLAAVRELDEHPGPVTYGQTMGGWGKLSLSSTAVYLDGLPVPYVTADNVVVDGLFARGVAATDD 1794
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1444 |
| Cds size | 1443 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622929314.225924-CDS-F-serratus_M_contig134:523473..523536 | 1622929314.225924-CDS-F-serratus_M_contig134:523473..523536 | Fucus serratus male | CDS | F-serratus_M_contig134 523474..523536 - |
| 1690962794.8190405-CDS-F-serratus_M_contig134:523473..523536 | 1690962794.8190405-CDS-F-serratus_M_contig134:523473..523536 | Fucus serratus male | CDS | F-serratus_M_contig134 523474..523536 - |
| 1622929314.2398918-CDS-F-serratus_M_contig134:524354..524645 | 1622929314.2398918-CDS-F-serratus_M_contig134:524354..524645 | Fucus serratus male | CDS | F-serratus_M_contig134 524355..524645 - |
| 1690962794.8285527-CDS-F-serratus_M_contig134:524354..524645 | 1690962794.8285527-CDS-F-serratus_M_contig134:524354..524645 | Fucus serratus male | CDS | F-serratus_M_contig134 524355..524645 - |
| 1622929314.2546003-CDS-F-serratus_M_contig134:525025..525441 | 1622929314.2546003-CDS-F-serratus_M_contig134:525025..525441 | Fucus serratus male | CDS | F-serratus_M_contig134 525026..525441 - |
| 1690962794.8377097-CDS-F-serratus_M_contig134:525025..525441 | 1690962794.8377097-CDS-F-serratus_M_contig134:525025..525441 | Fucus serratus male | CDS | F-serratus_M_contig134 525026..525441 - |
| 1622929314.2685664-CDS-F-serratus_M_contig134:525693..525828 | 1622929314.2685664-CDS-F-serratus_M_contig134:525693..525828 | Fucus serratus male | CDS | F-serratus_M_contig134 525694..525828 - |
| 1690962794.8471239-CDS-F-serratus_M_contig134:525693..525828 | 1690962794.8471239-CDS-F-serratus_M_contig134:525693..525828 | Fucus serratus male | CDS | F-serratus_M_contig134 525694..525828 - |
| 1622929314.2925603-CDS-F-serratus_M_contig134:526545..526609 | 1622929314.2925603-CDS-F-serratus_M_contig134:526545..526609 | Fucus serratus male | CDS | F-serratus_M_contig134 526546..526609 - |
| 1690962794.856804-CDS-F-serratus_M_contig134:526545..526609 | 1690962794.856804-CDS-F-serratus_M_contig134:526545..526609 | Fucus serratus male | CDS | F-serratus_M_contig134 526546..526609 - |
| 1622929314.307691-CDS-F-serratus_M_contig134:527091..527565 | 1622929314.307691-CDS-F-serratus_M_contig134:527091..527565 | Fucus serratus male | CDS | F-serratus_M_contig134 527092..527565 - |
| 1690962794.8680744-CDS-F-serratus_M_contig134:527091..527565 | 1690962794.8680744-CDS-F-serratus_M_contig134:527091..527565 | Fucus serratus male | CDS | F-serratus_M_contig134 527092..527565 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig134.2531.1 >prot_F-serratus_M_contig134.2531.1 ID=prot_F-serratus_M_contig134.2531.1|Name=mRNA_F-serratus_M_contig134.2531.1|organism=Fucus serratus male|type=polypeptide|length=481bp
MPHPARPSSSLTPRLHQHTTPMSFKGSGCGDGPDVVPPSRATSSDGQSGG GRSSDTDVGVDDTPSIPRAFLRGIKRRGASLSALFGLGGSDSSENAREQE EDKNYVDESRRDGTSVPDDVGGFNATSSKTTGGGADDDSDCSGSPPLVVL EVDQISFEVSRKEPRQALLASIRKLDEHPGDVTYGQAMGGWGKLSTSSFT LFLDNLPVPFLSVESVVWEGLFARAALIGTDTSYRQVYSRLSSFHAEHPF ARAAAAADATEATGGLSFVAPSSLRRNRFDEVPDGHPSVESSISSLSTRQ QLPERNGTLLLLVKALPGGDESHLLAGRAALRRHACFVERMEGTPSKFYV DLKGGVAGLRIVYGKCLDSSVETIVRAMGRLFPAVRALNKQPAKQQEEQQ RNSSTRSQLFRIDSAGETFGVPDSAKADPAAGNIHAATPNTPPAATAATT PVCGLLGQTQVPRTRKGFLHHGEGRAYRASR back to topmRNA from alignment at F-serratus_M_contig134:523474..527565- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig134.2531.1 ID=mRNA_F-serratus_M_contig134.2531.1|Name=mRNA_F-serratus_M_contig134.2531.1|organism=Fucus serratus male|type=mRNA|length=4092bp|location=Sequence derived from alignment at F-serratus_M_contig134:523474..527565- (Fucus serratus male) ATGCCCCACCCGGCACGTCCGTCGTCTTCACTGACCCCTCGGCTACATCA
ACACACAACACCGATGAGTTTTAAAGGCTCCGGGTGTGGAGACGGTCCTG
ACGTCGTCCCGCCGTCGAGAGCGACGAGCAGCGATGGCCAAAGTGGAGGC
GGAAGAAGTAGCGACACCGACGTTGGTGTCGACGACACGCCGTCGATACC
TCGAGCTTTCCTGCGAGGGATCAAGAGGCGCGGTGCCAGTCTATCTGCCC
TTTTCGGGCTCGGCGGTAGCGACTCCAGTGAAAACGCTAGAGAGCAGGAG
GAGGATAAAAATTACGTAGACGAGTCACGTAGAGATGGCACGTCTGTTCC
GGACGATGTAGGAGGCTTCAATGCCACCAGTTCCAAAACTACGGGGGGGG
GAGCTGACGACGACAGCGACTGTTCGGGTTCTCCTCCATTGGTTGTGCTT
GAAGTCGACCAGATTTCATTCGAGGTCAGTGGTTACATGGTCATACCCAA
ATCAAACTATCCCGACTTTTTTGTTAGTTGATGCCCCACATTATTGTTTT
TTTTGCCTCAACCGGTCCGTAAGGGTGGGTGATTATTTTTCCTTTTTATT
TTTCCTTTTTATTTTTCCCTTTTATTTTATTTCGTCTCACTTATAGCCTA
TGGGCCCCAGTCCATCCTGCCTGTGGTCACTAAGGATCTTCCCATCTCTC
CCCGGTTCACGCCTTCCAAACTTTTATCGCGATGCAAGTTCAGCACTCTT
ACAACTCGTCAACCAACGGTTGAATTTTACCCACTCACGTTCTCACCCTT
TCCGCTACGGAAGCAAGAATTGAAATCCTAAAGCCAAGAATCAACCTCAC
GACCTCCGCACTAGCAGGTGTGCAGGTTACCTACTAGACCACGACTAGCT
CATCGAAATGATCATGGCATTCTTTGCTCTGCCGCTTTGATATCTTTATA
CGCCAGGTGTCCCGCAAAGAACCTCGACAAGCGCTACTTGCCTCCATAAG
GAAACTCGATGAACATCCAGGTCAGGAACCCCCACGGTCCGCTGAGCACA
TTCGAGTCGAGCTCCTATTCTCTTCCCCCACCGCAAACTGCGTCGTTGAC
GTGATGGCATCTAATTTAAAACTAAACAATAGCGGGAACGCAAGGTGAAC
GAACAAATTGGTTATCTCCAAAACAATAGTGAATGCTATTACAACAGCCT
CTCCAAGGAGAAGATTCCCGAAATATGTAGACCGAATGGTTGTTTTTCGG
GACATTCAAGCGTATCAGGTAAGACCCGCTTCCCCAGGAGGGGCTGCTTG
ATCCCACTCCCTCCTAAGCTTGGTAACACAATCGGCGAATTACTTCATCC
ACTTTTCGTTTAATCACGTAGCTACATCTCCTACGGAACGCAAAAAGAGG
TTGACCACATGGGTGCTAGACCGGATGCTGATGAAGTACGCACGCCGCGC
GATGTTCAGGACGAAAGTCGGTAGACTGAGCCAAAGACGCGCCTCTAAAG
GGAATCAAACCCGCACAACAAGACAGTGGCAAGCAAGACCTTGTAAAGAC
CGCCTAGATGGTCGACTGTTGTGCACGCGCAGCAGACCGCTGTCGAGGTC
TGCTTCCCCTCAAACGCTTACACAAGCAACCAACGCATTATCTCATGAAC
GCATATCCGTAAGTGGCGTGCGAGAGGCGGAGCGGAACGTAACTGCTACC
TTGTAATAAAAGAAACGTTTGTTTTTTGTTTCTTCAGGCGACGTGACTTA
CGGTCAGGCGATGGGAGGCTGGGGCAAGCTATCCACCTCCTCCTTCACCC
TTTTCTTGGATAATCTTCCTGTGCCATTCCTGTCTGTGGAAAGCGTTGTC
TGGGAGGGTCTGTTCGCCAGGGGTGAGATGTGGTCCAGACGTTGCGGGAA
TTTCTCCGAGAGGGGTCAGTCACCACCTCGTGCCCCGTCTACGCTCCGCT
CTTTTATGCTTGTTGTGTCGAGATAAACTACTACTTCGGGTCTTTTGAAA
AAATCTAAGGGTAACGTTTTGTCCGGAAAATGCCCAATACCCCCCTCCCT
CTCTCTCCGTCCCAACTATTCTTCTTAACCGTTCATCCATTCTTCCTATG
TAATCGAAACGAAACGACATTCAGCCGCGTTGATTGGGACGGACACCTCT
TATCGTCAAGTCTACTCTCGTCTGTCTTCTTTTCACGCTGAGCATCCTTT
TGCGCGGGCGGCGGCCGCGGCCGATGCGACAGAAGCGACGGGGGGGCTTT
CATTTGTCGCCCCTTCCTCGCTAAGGCGCAACCGCTTTGACGAAGTCCCG
GACGGCCATCCTTCAGTCGAGTCATCGATCTCAAGCCTTTCGACACGGCA
ACAGCTTCCGGAGCGAAATGGCACCCTGCTGCTGCTTGTAAAAGCGCTCC
CAGGGGGCGATGAGTCACACCTGCTGGCGGGTAGAGCAGCATTGCGGAGG
CACGCTTGCTTCGTGGAGCGGATGGAAGGGACTCCGTCAAAATTTTATGT
CGATCTCAAGGGGGGAGTGGCCGGACTCAGAATTGTTTACGTGAGTTGCG
TGTGCGTATCTCTCGAATGAACAATATCTCAAGCTCAACATTCACAGATG
AGGGAAGGGTCTCGGTAAAGGAAGAAGGAGTGTGATGAGCGGACCTCGCA
AAGATTACCTTGGTTACGCCCGGAAAGCAGCGAGTAGACTGCAGCGGCTC
CAGCGGGCAGTGAAACGCGGTGGTCGCTTTTTACCTCGGAGGCAGGGACT
CTTTCCTCTTGAACCCTCTTTCAGCTGTCGTACGCGTACTCGCTTTATCC
AAACTATGGCGAGCAAAAACTAAAATGTTTCGCCTCAGTGCACATGCCCT
CCCGTTTCGGTTACATTCCGTATGCGACACTCGATAACTCGTCGGAGCAA
ACCGACCCACCTTGAAACAGGGCAAGTGCCTCGACAGCTCGGTAGAAACA
ATCGTCAGAGCAATGGGCCGACTTTTTCCTGCAGTGAGGGCCTTGAACAA
ACAACCAGCGAAACAACAAGAAGAGCAGCAGCGTAACAGCTCAACACGAA
GCCAGCTCTTCCGAATAGATTCCGCTGGAGAAACATTCGGGGTTCCGGAT
TCTGCCAAGGCTGACCCAGCCGCCGGGAATATTCACGCCGCAACGCCAAA
TACTCCACCAGCGGCAACGGCAGCAACTACCCCCGTTTGTGGCCTTTTGG
GACAGACTCAGGTGTGTCATGACAGCGCAGGAAGTTTCGAACGTGTTCGA
GAATTGCGCGCACAGGTTATTTGTTGCCACTTGGGCGTTGTTTGTGTTAC
CGCTCGCACGAATTAACTAACTTTTCAATAAATAATCCTGCTGGTGGGAG
GTTCGAGCGTTGTGGGAGCAATCCGTGGCCTTGTCGAGCCTAAGCCCCAA
ACAAAAACTTCGTGTATTTAACTTAGCGCCAATTGAATCAGAAAGCGTCT
CGGGATCGGGGATGAGACTGCAAACACGCTAAGCCCAGCGTTTTTCAGAC
GCCTTGGTGAATCCCGCGCGCAGGCAAACTACGCTCAGTTGGGCACTGTG
TGTGTTCCTTTCATAAGGGCGAACAAACCTCTCCTAGATTGATGGTAGTG
GAAACTGGATTGTTCTGTTTGCAGCGCCTGGCCTTGTCGTTTCGTAGACG
AGGGTAAACGCACAGCTGCGCTTTAGCTCTGCATCGGTTGAGACACGTGT
AGCTAATATCGAGAGGGAGACTGCGGCACGCTACTTCAAGCACTTCAGAC
ACACTAGCATGTTTTCGAACTCCTTATTGATCTCGCCTCAAGCAATTCTA
AGTACCAGGTAGCGTGTTAGTAGTCTCATTCATTTTCGATTTCGTTTCTT
CTATCTACGGGCTAATCAAATACGTTTACGGGCTAACCCTTGTGTGCGGG
GTACGACAAAGCCCCGCGGCTTTAAGCATGCTGCGTATTTTTGTGCGAAG
TCATGCAAACACACACATGAATGCCCTCACGCACACACCTGCACACCCAC
ACCCTCATCGTTTTAATTTGGAACAACAGGTACCTCGTACACGGAAGGGT
TTCCTTCACCACGGAGAAGGTAGAGCTTACCGCGCTTCTAGG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig134:523474..527565- >mRNA_F-serratus_M_contig134.2531.1 ID=mRNA_F-serratus_M_contig134.2531.1|Name=mRNA_F-serratus_M_contig134.2531.1|organism=Fucus serratus male|type=CDS|length=2886bp|location=Sequence derived from alignment at F-serratus_M_contig134:523474..527565- (Fucus serratus male) ATGCCCCACCCGGCACGTCCGTCGTCTTCACTGACCCCTCGGCTACATCA ACACACAACACCGATGAGTTTTAAAGGCTCCGGGTGTGGAGACGGTCCTG ACGTCGTCCCGCCGTCGAGAGCGACGAGCAGCGATGGCCAAAGTGGAGGC GGAAGAAGTAGCGACACCGACGTTGGTGTCGACGACACGCCGTCGATACC TCGAGCTTTCCTGCGAGGGATCAAGAGGCGCGGTGCCAGTCTATCTGCCC TTTTCGGGCTCGGCGGTAGCGACTCCAGTGAAAACGCTAGAGAGCAGGAG GAGGATAAAAATTACGTAGACGAGTCACGTAGAGATGGCACGTCTGTTCC GGACGATGTAGGAGGCTTCAATGCCACCAGTTCCAAAACTACGGGGGGGG GAGCTGACGACGACAGCGACTGTTCGGGTTCTCCTCCATTGGTTGTGCTT GAAGTCGACCAGATTTCATTCGAGATGCCCCACCCGGCACGTCCGTCGTC TTCACTGACCCCTCGGCTACATCAACACACAACACCGATGAGTTTTAAAG GCTCCGGGTGTGGAGACGGTCCTGACGTCGTCCCGCCGTCGAGAGCGACG AGCAGCGATGGCCAAAGTGGAGGCGGAAGAAGTAGCGACACCGACGTTGG TGTCGACGACACGCCGTCGATACCTCGAGCTTTCCTGCGAGGGATCAAGA GGCGCGGTGCCAGTCTATCTGCCCTTTTCGGGCTCGGCGGTAGCGACTCC AGTGAAAACGCTAGAGAGCAGGAGGAGGATAAAAATTACGTAGACGAGTC ACGTAGAGATGGCACGTCTGTTCCGGACGATGTAGGAGGCTTCAATGCCA CCAGTTCCAAAACTACGGGGGGGGGAGCTGACGACGACAGCGACTGTTCG GGTTCTCCTCCATTGGTTGTGCTTGAAGTCGACCAGATTTCATTCGAGGT GTCCCGCAAAGAACCTCGACAAGCGCTACTTGCCTCCATAAGGAAACTCG ATGAACATCCAGGTGTCCCGCAAAGAACCTCGACAAGCGCTACTTGCCTC CATAAGGAAACTCGATGAACATCCAGGCGACGTGACTTACGGTCAGGCGA TGGGAGGCTGGGGCAAGCTATCCACCTCCTCCTTCACCCTTTTCTTGGAT AATCTTCCTGTGCCATTCCTGTCTGTGGAAAGCGTTGTCTGGGAGGGTCT GTTCGCCAGGGGCGACGTGACTTACGGTCAGGCGATGGGAGGCTGGGGCA AGCTATCCACCTCCTCCTTCACCCTTTTCTTGGATAATCTTCCTGTGCCA TTCCTGTCTGTGGAAAGCGTTGTCTGGGAGGGTCTGTTCGCCAGGGCCGC GTTGATTGGGACGGACACCTCTTATCGTCAAGTCTACTCTCGTCTGTCTT CTTTTCACGCTGAGCATCCTTTTGCGCGGGCGGCGGCCGCGGCCGATGCG ACAGAAGCGACGGGGGGGCTTTCATTTGTCGCCCCTTCCTCGCTAAGGCG CAACCGCTTTGACGAAGTCCCGGACGGCCATCCTTCAGTCGAGTCATCGA TCTCAAGCCTTTCGACACGGCAACAGCTTCCGGAGCGAAATGGCACCCTG CTGCTGCTTGTAAAAGCGCTCCCAGGGGGCGATGAGTCACACCTGCTGGC GGGTAGAGCAGCATTGCGGAGGCACGCTTGCTTCGTGGAGCGGATGGAAG GGACTCCGTCAAAATTTTATGTCGATCTCAAGGGGGGAGTGGCCGGACTC AGAATTGTTTACCCGCGTTGATTGGGACGGACACCTCTTATCGTCAAGTC TACTCTCGTCTGTCTTCTTTTCACGCTGAGCATCCTTTTGCGCGGGCGGC GGCCGCGGCCGATGCGACAGAAGCGACGGGGGGGCTTTCATTTGTCGCCC CTTCCTCGCTAAGGCGCAACCGCTTTGACGAAGTCCCGGACGGCCATCCT TCAGTCGAGTCATCGATCTCAAGCCTTTCGACACGGCAACAGCTTCCGGA GCGAAATGGCACCCTGCTGCTGCTTGTAAAAGCGCTCCCAGGGGGCGATG AGTCACACCTGCTGGCGGGTAGAGCAGCATTGCGGAGGCACGCTTGCTTC GTGGAGCGGATGGAAGGGACTCCGTCAAAATTTTATGTCGATCTCAAGGG GGGAGTGGCCGGACTCAGAATTGTTTACGGCAAGTGCCTCGACAGCTCGG TAGAAACAATCGTCAGAGCAATGGGCCGACTTTTTCCTGCAGTGAGGGCC TTGAACAAACAACCAGCGAAACAACAAGAAGAGCAGCAGCGTAACAGCTC AACACGAAGCCAGCTCTTCCGAATAGATTCCGCTGGAGAAACATTCGGGG TTCCGGATTCTGCCAAGGCTGACCCAGCCGCCGGGAATATTCACGCCGCA ACGCCAAATACTCCACCAGCGGCAACGGCAGCAACTACCCCCGTTTGTGG CCTTTTGGGACAGACTCAGGGCAAGTGCCTCGACAGCTCGGTAGAAACAA TCGTCAGAGCAATGGGCCGACTTTTTCCTGCAGTGAGGGCCTTGAACAAA CAACCAGCGAAACAACAAGAAGAGCAGCAGCGTAACAGCTCAACACGAAG CCAGCTCTTCCGAATAGATTCCGCTGGAGAAACATTCGGGGTTCCGGATT CTGCCAAGGCTGACCCAGCCGCCGGGAATATTCACGCCGCAACGCCAAAT ACTCCACCAGCGGCAACGGCAGCAACTACCCCCGTTTGTGGCCTTTTGGG ACAGACTCAGGTACCTCGTACACGGAAGGGTTTCCTTCACCACGGAGAAG GTAGAGCTTACCGCGCTTCTAGGGTACCTCGTACACGGAAGGGTTTCCTT CACCACGGAGAAGGTAGAGCTTACCGCGCTTCTAGG back to top
|