mRNA_F-serratus_M_contig1336.2498.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1336.2498.1
Unique NamemRNA_F-serratus_M_contig1336.2498.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1336.2498.1 vs. uniprot
Match: D7G1X6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1X6_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 7.280e-26
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1 
Query:    4 DGESNEVCDSRLFLLDLADQESAWVAGAPLPGDCGVGQTMDTVRLVK----GDDTKLRALVFGGCQADSDGSFQCSNDLHAYDLGADRW 258
            DGESNE CDSR FL+DL D +  W  G   PG+CG+G TMDTV + +      + ++RA+VFGGC+   DG F CSNDL+AYDL  +RW
Sbjct:  184 DGESNERCDSRFFLVDLGDPQGEWREGPSFPGECGIGGTMDTVNITRKHTADGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRW 272
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BLAST of mRNA_F-serratus_M_contig1336.2498.1 vs. uniprot
Match: A0A6H5KHR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR5_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.400e-24
Identity = 48/89 (53.93%), Postives = 60/89 (67.42%), Query Frame = 1 
Query:    4 DGESNEVCDSRLFLLDLADQESAWVAGAPLPGDCGVGQTMDTVRLVKGDDT----KLRALVFGGCQADSDGSFQCSNDLHAYDLGADRW 258
            DGESNE CDSR FL+DL D +  W  G   PG+CG+G TM+TV +     T    ++RA+VFGGC+   DG F CSNDL+AYDL  +RW
Sbjct:  278 DGESNERCDSRFFLVDLGDPQGKWREGPSFPGECGIGGTMNTVNITSKHTTDGENEVRAVVFGGCKLAPDGVFSCSNDLYAYDLATNRW 366
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1336.2498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1X6_ECTSI7.280e-2653.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KHR5_9PHAE1.400e-2453.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1336contigF-serratus_M_contig1336:141922..143736 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929311.2041686-CDS-F-serratus_M_contig1336:141922..1420211622929311.2041686-CDS-F-serratus_M_contig1336:141922..142021Fucus serratus maleCDSF-serratus_M_contig1336 141923..142021 -
1690962793.3337765-CDS-F-serratus_M_contig1336:141922..1420211690962793.3337765-CDS-F-serratus_M_contig1336:141922..142021Fucus serratus maleCDSF-serratus_M_contig1336 141923..142021 -
1622929311.2209823-CDS-F-serratus_M_contig1336:143577..1437361622929311.2209823-CDS-F-serratus_M_contig1336:143577..143736Fucus serratus maleCDSF-serratus_M_contig1336 143578..143736 -
1690962793.3573554-CDS-F-serratus_M_contig1336:143577..1437361690962793.3573554-CDS-F-serratus_M_contig1336:143577..143736Fucus serratus maleCDSF-serratus_M_contig1336 143578..143736 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1336.2498.1prot_F-serratus_M_contig1336.2498.1Fucus serratus malepolypeptideF-serratus_M_contig1336 141923..143736 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1336.2498.1

>prot_F-serratus_M_contig1336.2498.1 ID=prot_F-serratus_M_contig1336.2498.1|Name=mRNA_F-serratus_M_contig1336.2498.1|organism=Fucus serratus male|type=polypeptide|length=86bp
VDGESNEVCDSRLFLLDLADQESAWVAGAPLPGDCGVGQTMDTVRLVKGD
DTKLRALVFGGCQADSDGSFQCSNDLHAYDLGADRW
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mRNA from alignment at F-serratus_M_contig1336:141922..143736-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1336.2498.1 ID=mRNA_F-serratus_M_contig1336.2498.1|Name=mRNA_F-serratus_M_contig1336.2498.1|organism=Fucus serratus male|type=mRNA|length=1815bp|location=Sequence derived from alignment at F-serratus_M_contig1336:141922..143736- (Fucus serratus male)
GTTGACGGGGAGTCTAACGAAGTGTGCGACTCTCGGCTGTTCCTGCTAGA
CCTCGCCGACCAGGAGAGCGCTTGGGTCGCGGGGGCGCCGTTGCCCGGCG
ACTGCGGCGTCGGCCAGACGATGGACACGGTCAGGCTCGTCAAGGGGGAC
GATACCAAGGTGCTGTGTGCTGATTTTCCTTGTTTTTGTTGTGTGTTGTG
TATTCTTGTGTGTGTGTGTGTGTTTATGTGTATTTATTAAATTGCACATA
ACCGCGCAATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGTATTT
ATCTTTGTGCGTGATTGTTTGTAATTGTGTAAGTGTAAGTCTGTGTTTGT
GTGTAATTGTATTATAGGTGCACTTTTTTGTTTGTATTTCACTTCTATGC
CGACGGAGTCCCTCTTGTTATTAATAGCTCTAATCTACTATTAATAGTAA
CAGGTCTACGTATTTATACCCTACAGTATTGTATGTATGTATGTATATAT
GTATGCATATAGCAAGAGTAATGATCAACCGGGTCAGGTTGCCGATCCTG
CTCGTGGACAGCTGAACAGGGGGGGGGGGAAACAAACTGTCCTCGTTCGC
GCCGGAGAACTTGGTCTCGTGAGGAGGGTTCGTCAGTCCTTTTCCGCGTC
AGCCTGTTCAAATCTGGTGCTTACTTACGGGGTTTCTCCCGATTCCCGCG
GCGGCGTCTATATATTTATTTATATAAAACCGCCATACTCCATCGGGTCA
GTCCCGAGTTTATCGGGTCACGCAATTGCGTACCGATGGCGTTCACTGCC
GAGAGTCTGCCGGCACAAGGCCAGTAAACCTCAAGGTAGTTCCGAACGAG
TGCTGCCTTGCCAGGTCACCATAGGCCAATTAATATGCGCCTCTCTTTCC
CCCACCCACTATCTTGGTATGAAGTTGGCATGTTGAAAGTATCGTAGGTT
TAAGAGAGGAAATTAAGTCGGGATAATGTAAGCTCAGCACGCGCGGCCTG
CGCTTCCTCAAAATCAGCAATTATTTGGTACTAAATATATATATATTTTC
AACTTGACTCTCAATCTAATACGGCCGACGCTTTCCGCTAATACGGATAT
CAAGAGCAGAAGACTCGTTGATATCGGAACGAAAATATTACGCTCATCAA
GTGTCGCGACTTCATGTAATTTGAATACTCGCGGGCGTATTATGTATATA
TGTGCTTGTATGTCGGAGGGGGGGGGGGTCTTTCTTCCCCTCGCGGAACC
CTGCAGCTGCTGTCTCCTGGTCGTTCTTTCTTCTTTTCCTTGACACCTCA
CCTCGAGCAACTTTCGGCTTCCCTCAACTGGAAGAAAAGTATCCAAAATT
GCCATTATGGTTTTTTGTTCGCCTTTTTTTTCCTTTTTTTTTAAATCCGG
TACTATGATAAATGAATTTTCGGCGGAGTCAAATGTTCTCTCTAAAGTAA
AAAATAGCTAAGTCACAATATAATCTACTACCCCCCCCCCCCCCCCCCCC
TTGTCCTCCTCCTCGCCTCCCCGACACGCACGTAACCTGTTGGTTCCCCC
TGTGCGACGCCCATTCGCCGCTCTTATCGCCCGTTGTGTTGCCTTCCCAT
ATTTCTACACATATTTATTTCTATGTAGCTATCTACCTGTATTCATATCA
ATCCATCTTTCTCTGGCTTACTATCCTCTCTCTGTCTCTCTGTCTAATAT
GTGGCTTCTTTACAGCTGCGAGCTTTGGTGTTCGGGGGCTGCCAGGCGGA
CTCGGACGGCAGTTTTCAGTGTTCCAACGATCTGCACGCGTACGACCTGG
GCGCCGACAGGTGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1336:141922..143736-

>mRNA_F-serratus_M_contig1336.2498.1 ID=mRNA_F-serratus_M_contig1336.2498.1|Name=mRNA_F-serratus_M_contig1336.2498.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig1336:141922..143736- (Fucus serratus male)
GTTGACGGGGAGTCTAACGAAGTGTGCGACTCTCGGCTGTTCCTGCTAGA
CCTCGCCGACCAGGAGAGCGCTTGGGTCGCGGGGGCGCCGTTGCCCGGCG
ACTGCGGCGTCGGCCAGACGATGGACACGGTCAGGCTCGTCAAGGGGGAC
GATACCAAGGTTGACGGGGAGTCTAACGAAGTGTGCGACTCTCGGCTGTT
CCTGCTAGACCTCGCCGACCAGGAGAGCGCTTGGGTCGCGGGGGCGCCGT
TGCCCGGCGACTGCGGCGTCGGCCAGACGATGGACACGGTCAGGCTCGTC
AAGGGGGACGATACCAAGCTGCGAGCTTTGGTGTTCGGGGGCTGCCAGGC
GGACTCGGACGGCAGTTTTCAGTGTTCCAACGATCTGCACGCGTACGACC
TGGGCGCCGACAGGTGGCTGCGAGCTTTGGTGTTCGGGGGCTGCCAGGCG
GACTCGGACGGCAGTTTTCAGTGTTCCAACGATCTGCACGCGTACGACCT
GGGCGCCGACAGGTGG
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