mRNA_F-serratus_M_contig1335.2492.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: UPI0015896A5A (secreted RxLR effector protein 161-like n=1 Tax=Populus alba TaxID=43335 RepID=UPI0015896A5A) HSP 1 Score: 57.4 bits (137), Expect = 1.660e-8 Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHAKFI 159
GR+ HIDVK+H +RD + + + ++F RSEDQ AD+ TKPL F+K K +
Sbjct: 144 GRSKHIDVKYHFLRDLAKDEVINLIFCRSEDQMADIFTKPLKTSLFHKLRKLL 196
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A2I0AK16_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AK16_9ASPA) HSP 1 Score: 55.1 bits (131), Expect = 1.190e-7 Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYK 144
GR+ HIDVK++ +RD S+ +++V+ RSEDQ AD+ TKPL + TF K
Sbjct: 134 GRSKHIDVKYYFLRDLSNNGTIKLVYCRSEDQVADIQTKPLKLVTFAK 181
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: UPI0019410DF6 (Ty1/Copia family ribonuclease HI n=1 Tax=Serratia marcescens TaxID=615 RepID=UPI0019410DF6) HSP 1 Score: 52.8 bits (125), Expect = 1.270e-7 Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 1
Query: 4 RTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHAKFILNVV 171
RT HIDV+HH +RD + + V +EDQ ADL TKPLD + F+K K LN++
Sbjct: 25 RTKHIDVRHHFIRDHQQKGDIAIESVGTEDQLADLFTKPLDEKRFHK-LKNELNIL 79
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A2K3PKY8_TRIPR (Uncharacterized protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PKY8_TRIPR) HSP 1 Score: 55.5 bits (132), Expect = 1.570e-7 Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYK 144
GR+ HIDV+ H +RD + + + +V RSEDQ ADL TKPL +++FYK
Sbjct: 238 GRSKHIDVRFHFLRDLTKDESIELVHCRSEDQLADLLTKPLKLESFYK 285
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: UPI001F1DB15C (Ty1/Copia family ribonuclease HI n=1 Tax=Salmonella sp. zj-f54 TaxID=2582617 RepID=UPI001F1DB15C) HSP 1 Score: 52.4 bits (124), Expect = 1.840e-7 Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 1
Query: 4 RTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTF 138
RT HID++HH +RD + + V +V +E+Q AD+ TKPLD +TF
Sbjct: 26 RTKHIDIRHHFLRDHQQKRDIEVFYVSTENQLADIFTKPLDEKTF 70
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A5B7B1Y6_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B1Y6_DAVIN) HSP 1 Score: 55.1 bits (131), Expect = 2.330e-7 Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1
Query: 1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHAKFI 159
GR+ HIDVK+H +RD ++ + +++ RSEDQ AD+ TKPL TF K K +
Sbjct: 263 GRSKHIDVKYHFLRDLTNDGVINLIYCRSEDQIADILTKPLKFPTFQKPRKLL 315
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A6P5SZW2_PRUAV (uncharacterized protein LOC110761517 n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5SZW2_PRUAV) HSP 1 Score: 54.7 bits (130), Expect = 3.120e-7 Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 1
Query: 1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYK 144
GR+ HIDVK++ +RD S+ +++V+ RSEDQ AD+ TKPL + TF +
Sbjct: 244 GRSKHIDVKYYFLRDLSNDGTIKLVYCRSEDQVADIQTKPLKLATFVR 291
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A2I0WY96_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WY96_9ASPA) HSP 1 Score: 52.4 bits (124), Expect = 4.540e-7 Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 4 RTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHAKFILNVV 171
R+ HIDV+ H +RD + V+V +V+S+DQ AD+ TKPL + F K K +L VV
Sbjct: 74 RSKHIDVRFHYIRDQIKGKEVQVEYVKSQDQIADIFTKPLAAEQFIK-LKILLGVV 128
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A5C7IDG6_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7IDG6_9ROSI) HSP 1 Score: 54.3 bits (129), Expect = 4.630e-7 Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query: 1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHA 150
GR+ HIDV++H +RD + ++F RSEDQ AD+ TKPL + F KH+
Sbjct: 445 GRSKHIDVRYHFLRDLCKDGTIDLIFCRSEDQVADILTKPLKLPVFVKHS 494
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A182H646_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H646_AEDAL) HSP 1 Score: 53.9 bits (128), Expect = 5.630e-7 Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1
Query: 4 RTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLD 126
R+ HIDVKHH VRD VR+ +VR+EDQ ADL TKP+D
Sbjct: 234 RSKHIDVKHHFVRDHISNGNVRIEYVRTEDQLADLFTKPMD 274 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1335.2492.1 >prot_F-serratus_M_contig1335.2492.1 ID=prot_F-serratus_M_contig1335.2492.1|Name=mRNA_F-serratus_M_contig1335.2492.1|organism=Fucus serratus male|type=polypeptide|length=58bp GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHAback to top mRNA from alignment at F-serratus_M_contig1335:235861..236034+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1335.2492.1 ID=mRNA_F-serratus_M_contig1335.2492.1|Name=mRNA_F-serratus_M_contig1335.2492.1|organism=Fucus serratus male|type=mRNA|length=174bp|location=Sequence derived from alignment at F-serratus_M_contig1335:235861..236034+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1335:235861..236034+ >mRNA_F-serratus_M_contig1335.2492.1 ID=mRNA_F-serratus_M_contig1335.2492.1|Name=mRNA_F-serratus_M_contig1335.2492.1|organism=Fucus serratus male|type=CDS|length=348bp|location=Sequence derived from alignment at F-serratus_M_contig1335:235861..236034+ (Fucus serratus male)back to top |