mRNA_F-serratus_M_contig1331.2476.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1331.2476.1
Unique NamemRNA_F-serratus_M_contig1331.2476.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1331.2476.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1331contigF-serratus_M_contig1331:63647..63968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size322
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929304.6222854-CDS-F-serratus_M_contig1331:63646..639671622929304.6222854-CDS-F-serratus_M_contig1331:63646..63967Fucus serratus maleCDSF-serratus_M_contig1331 63647..63967 +
1690962791.478263-CDS-F-serratus_M_contig1331:63646..639671690962791.478263-CDS-F-serratus_M_contig1331:63646..63967Fucus serratus maleCDSF-serratus_M_contig1331 63647..63967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1331.2476.1prot_F-serratus_M_contig1331.2476.1Fucus serratus malepolypeptideF-serratus_M_contig1331 63647..63967 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1331.2476.1

>prot_F-serratus_M_contig1331.2476.1 ID=prot_F-serratus_M_contig1331.2476.1|Name=mRNA_F-serratus_M_contig1331.2476.1|organism=Fucus serratus male|type=polypeptide|length=107bp
LGDIPRVFEIQLQAERLIVFRYHSRHSRLRPHNFHSALKWPRSSKDSQGK
PRSVHSSLQRVVVMSPSSMWTGAALDFHRWSLHCCLTPLTRFHLPSPFHP
PSSPLGP
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mRNA from alignment at F-serratus_M_contig1331:63647..63968+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1331.2476.1 ID=mRNA_F-serratus_M_contig1331.2476.1|Name=mRNA_F-serratus_M_contig1331.2476.1|organism=Fucus serratus male|type=mRNA|length=322bp|location=Sequence derived from alignment at F-serratus_M_contig1331:63647..63968+ (Fucus serratus male)
CTGGGAGATATTCCGCGAGTCTTCGAGATTCAGCTGCAGGCAGAACGGCT
GATTGTTTTCCGGTACCATTCACGTCACAGTCGCTTGAGGCCCCATAATT
TTCATTCGGCGTTGAAATGGCCGAGGAGTTCGAAAGACTCCCAAGGGAAA
CCCCGCTCTGTGCACTCAAGCCTCCAGCGTGTGGTGGTGATGTCACCCTC
CTCGATGTGGACTGGGGCAGCGCTTGATTTCCACCGCTGGAGTCTTCACT
GCTGTTTGACACCACTGACTCGATTTCATCTTCCATCGCCCTTCCATCCA
CCGAGCTCGCCTCTCGGTCCCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1331:63647..63968+

>mRNA_F-serratus_M_contig1331.2476.1 ID=mRNA_F-serratus_M_contig1331.2476.1|Name=mRNA_F-serratus_M_contig1331.2476.1|organism=Fucus serratus male|type=CDS|length=642bp|location=Sequence derived from alignment at F-serratus_M_contig1331:63647..63968+ (Fucus serratus male)
CTGGGAGATATTCCGCGAGTCTTCGAGATTCAGCTGCAGGCAGAACGGCT
GATTGTTTTCCGGTACCATTCACGTCACAGTCGCTTGAGGCCCCATAATT
TTCATTCGGCGTTGAAATGGCCGAGGAGTTCGAAAGACTCCCAAGGGAAA
CCCCGCTCTGTGCACTCAAGCCTCCAGCGTGTGGTGGTGATGTCACCCTC
CTCGATGTGGACTGGGGCAGCGCTTGATTTCCACCGCTGGAGTCTTCACT
GCTGTTTGACACCACTGACTCGATTTCATCTTCCATCGCCCTTCCATCCA
CCGAGCTCGCCTCTCGGTCCCCTGGGAGATATTCCGCGAGTCTTCGAGAT
TCAGCTGCAGGCAGAACGGCTGATTGTTTTCCGGTACCATTCACGTCACA
GTCGCTTGAGGCCCCATAATTTTCATTCGGCGTTGAAATGGCCGAGGAGT
TCGAAAGACTCCCAAGGGAAACCCCGCTCTGTGCACTCAAGCCTCCAGCG
TGTGGTGGTGATGTCACCCTCCTCGATGTGGACTGGGGCAGCGCTTGATT
TCCACCGCTGGAGTCTTCACTGCTGTTTGACACCACTGACTCGATTTCAT
CTTCCATCGCCCTTCCATCCACCGAGCTCGCCTCTCGGTCCC
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