prot_F-serratus_M_contig1330.2473.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1330.2473.1
Unique Nameprot_F-serratus_M_contig1330.2473.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length49
Homology
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A2R4QQ38_9PHAE (50S ribosomal protein L23 n=3 Tax=Fucaceae TaxID=3010 RepID=A0A2R4QQ38_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 4.270e-18
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0
Query:    1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI 48
            + K KL+SII LIKYP+TTPKTLLLLE NQY FLVDPK NKLNIKKAI
Sbjct:    1 MVKIKLSSIIDLIKYPVTTPKTLLLLENNQYTFLVDPKLNKLNIKKAI 48          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A141BSN9_9PHAE (50S ribosomal protein L23, chloroplastic n=13 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSN9_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.960e-16
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 0
Query:    1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI 48
            + K KL+S+I LIKYP+TTPKTLLLLE NQY F+VDPK NK NIKK+I
Sbjct:    1 MVKRKLSSLIDLIKYPVTTPKTLLLLENNQYTFMVDPKLNKFNIKKSI 48          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A0R6LUV2_UNDPI (50S ribosomal protein L23, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUV2_UNDPI)

HSP 1 Score: 64.7 bits (156), Expect = 2.470e-12
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0
Query:    1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI 48
            + + K +S I LIKYP+TT KT LLLE NQY FLVDPK NK++IKKAI
Sbjct:    1 MARIKFSSSIDLIKYPVTTIKTNLLLENNQYTFLVDPKLNKVSIKKAI 48          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A8F0JZN8_9PHAE (Ribosomal protein L23 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZN8_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 4.050e-11
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    1 LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI 48
            + + K +S I LIKYPI+T KT LLLE NQY FLVDP   K+N+KKAI
Sbjct:    1 MARIKFSSTIDLIKYPISTNKTSLLLENNQYTFLVDPVLTKINVKKAI 48          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A1I9LVJ8_9PHAE (50S ribosomal protein L23, chloroplastic n=8 Tax=Ectocarpales TaxID=2877 RepID=A0A1I9LVJ8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.320e-10
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    7 NSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI 48
            +S I LIKYP+ T KT LL E NQY FLVDP+ NK+NIKKAI
Sbjct:    7 SSSIDLIKYPLITSKTNLLFEHNQYTFLVDPRLNKVNIKKAI 48          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A8F0F780_9PHAE (Ribosomal protein L23 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F780_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 4.660e-10
Identity = 30/43 (69.77%), Postives = 33/43 (76.74%), Query Frame = 0
Query:    6 LNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI 48
            +NS I LIKYP+TT KT LLLE NQY FLVD K  K+ IKKAI
Sbjct:    6 INSSIDLIKYPMTTDKTNLLLENNQYTFLVDRKMTKIAIKKAI 48          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A222AHH3_9CRYP (Ribosomal protein L23 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A222AHH3_9CRYP)

HSP 1 Score: 57.8 bits (138), Expect = 1.240e-9
Identity = 29/43 (67.44%), Postives = 31/43 (72.09%), Query Frame = 0
Query:    6 LNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI 48
            L  +I LIKYPI T K   LLE NQY F VDPK NKL+IKKAI
Sbjct:    3 LKHLIDLIKYPIITDKATKLLELNQYTFAVDPKSNKLHIKKAI 45          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A2F0AJW2_9PROT (50S ribosomal protein L23 n=1 Tax=Pelagibacterales bacterium TaxID=2026776 RepID=A0A2F0AJW2_9PROT)

HSP 1 Score: 56.2 bits (134), Expect = 8.460e-9
Identity = 24/42 (57.14%), Postives = 33/42 (78.57%), Query Frame = 0
Query:    7 NSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI 48
            N ++G++KYPI T KT+ LLE+NQY+F VDPK +K +IK  I
Sbjct:   28 NDLLGIVKYPILTEKTIRLLEQNQYSFAVDPKADKTSIKYVI 69          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A8F0JZQ2_9PHAE (Ribosomal protein L23 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0JZQ2_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.150e-8
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 0
Query:    7 NSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI 48
            +S I LIK P+ T KT LLLE NQY FLVDPK  K+N+K+AI
Sbjct:    7 SSSIDLIKCPVITIKTNLLLENNQYTFLVDPKLTKVNVKQAI 48          
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Match: A0A075DWS3_9EUKA (50S ribosomal protein L23, chloroplastic n=2 Tax=Chrysochromulina TaxID=35140 RepID=A0A075DWS3_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 9.060e-8
Identity = 22/42 (52.38%), Postives = 32/42 (76.19%), Query Frame = 0
Query:    7 NSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI 48
              ++G++KYPI T KT+ LLE+NQY+F VDPK +K  +K A+
Sbjct:    9 RDLLGILKYPILTEKTIRLLEQNQYSFAVDPKADKTAVKYAV 50          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1330.2473.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A2R4QQ38_9PHAE4.270e-1881.2550S ribosomal protein L23 n=3 Tax=Fucaceae TaxID=3... [more]
A0A141BSN9_9PHAE1.960e-1672.9250S ribosomal protein L23, chloroplastic n=13 Tax=... [more]
A0A0R6LUV2_UNDPI2.470e-1266.6750S ribosomal protein L23, chloroplastic n=25 Tax=... [more]
A0A8F0JZN8_9PHAE4.050e-1162.50Ribosomal protein L23 n=1 Tax=Desmarestia aculeata... [more]
A0A1I9LVJ8_9PHAE2.320e-1069.0550S ribosomal protein L23, chloroplastic n=8 Tax=E... [more]
A0A8F0F780_9PHAE4.660e-1069.77Ribosomal protein L23 n=1 Tax=Protohalopteris sp. ... [more]
A0A222AHH3_9CRYP1.240e-967.44Ribosomal protein L23 n=1 Tax=Cryptomonas curvata ... [more]
A0A2F0AJW2_9PROT8.460e-957.1450S ribosomal protein L23 n=1 Tax=Pelagibacterales... [more]
A0A8F0JZQ2_9PHAE2.150e-864.29Ribosomal protein L23 n=1 Tax=Chorda asiatica TaxI... [more]
A0A075DWS3_9EUKA9.060e-852.3850S ribosomal protein L23, chloroplastic n=2 Tax=C... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 9..48
e-value: 2.1E-8
score: 36.4
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 13..48
e-value: 3.6E-7
score: 30.5
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 9..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1330contigF-serratus_M_contig1330:24235..24381 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1330.2473.1mRNA_F-serratus_M_contig1330.2473.1Fucus serratus malemRNAF-serratus_M_contig1330 24113..24381 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1330.2473.1 ID=prot_F-serratus_M_contig1330.2473.1|Name=mRNA_F-serratus_M_contig1330.2473.1|organism=Fucus serratus male|type=polypeptide|length=49bp
LTKTKLNSIIGLIKYPITTPKTLLLLEKNQYAFLVDPKHNKLNIKKAI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR013025Ribosomal_L25/23
IPR012678Ribosomal_L23/L15e_core_dom_sf