mRNA_F-serratus_M_contig132.2369.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig132.2369.1
Unique NamemRNA_F-serratus_M_contig132.2369.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig132.2369.1 vs. uniprot
Match: D8LEG9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEG9_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.560e-8
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 3 
Query:   60 TAAEVTLLEKRFAMAVEEVISSRAAKRAAEVGEAAAIAQAEAAQVEAMNARAAADVMSAELERHK-TAVEDRVTAEAADWRKEIRDELRRWWLEDLVG 350
            T A V+LLEKRFA AVE+++++ AA+ AA  GE                  A AD+++A+LERHK +A  ++  A AA+WR+EIR EL RWW +DL+ 
Sbjct:  800 TVAAVSLLEKRFAAAVEDLVAAGAARAAAVAGEXXXXXXXXXXXXXXXEPLARADLLAADLERHKVSATMEQDGAAAAEWRREIRAELGRWWKDDLLA 897
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig132.2369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEG9_ECTSI2.560e-844.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig132contigF-serratus_M_contig132:817..1675 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size859
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig132.2369.1prot_F-serratus_M_contig132.2369.1Fucus serratus malepolypeptideF-serratus_M_contig132 822..1253 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929280.4090867-UTR-F-serratus_M_contig132:816..8211622929280.4090867-UTR-F-serratus_M_contig132:816..821Fucus serratus maleUTRF-serratus_M_contig132 817..821 +
1690962782.0992298-UTR-F-serratus_M_contig132:816..8211690962782.0992298-UTR-F-serratus_M_contig132:816..821Fucus serratus maleUTRF-serratus_M_contig132 817..821 +
1622929280.4352803-UTR-F-serratus_M_contig132:1253..16751622929280.4352803-UTR-F-serratus_M_contig132:1253..1675Fucus serratus maleUTRF-serratus_M_contig132 1254..1675 +
1690962782.124849-UTR-F-serratus_M_contig132:1253..16751690962782.124849-UTR-F-serratus_M_contig132:1253..1675Fucus serratus maleUTRF-serratus_M_contig132 1254..1675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929280.420643-CDS-F-serratus_M_contig132:821..12531622929280.420643-CDS-F-serratus_M_contig132:821..1253Fucus serratus maleCDSF-serratus_M_contig132 822..1253 +
1690962782.1088016-CDS-F-serratus_M_contig132:821..12531690962782.1088016-CDS-F-serratus_M_contig132:821..1253Fucus serratus maleCDSF-serratus_M_contig132 822..1253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig132.2369.1

>prot_F-serratus_M_contig132.2369.1 ID=prot_F-serratus_M_contig132.2369.1|Name=mRNA_F-serratus_M_contig132.2369.1|organism=Fucus serratus male|type=polypeptide|length=144bp
MFDRAGGYEEGDGSNGSSTAAEVTLLEKRFAMAVEEVISSRAAKRAAEVG
EAAAIAQAEAAQVEAMNARAAADVMSAELERHKTAVEDRVTAEAADWRKE
IRDELRRWWLEDLVGQSRSRLCRNLAPDALKILVRTPRFEAWG*
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mRNA from alignment at F-serratus_M_contig132:817..1675+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig132.2369.1 ID=mRNA_F-serratus_M_contig132.2369.1|Name=mRNA_F-serratus_M_contig132.2369.1|organism=Fucus serratus male|type=mRNA|length=859bp|location=Sequence derived from alignment at F-serratus_M_contig132:817..1675+ (Fucus serratus male)
CAGGCATGTTTGATCGTGCTGGCGGCTACGAAGAAGGGGATGGTAGCAAC
GGCAGCAGTACAGCTGCCGAGGTAACTCTTCTGGAGAAACGCTTCGCGAT
GGCAGTTGAAGAAGTCATTTCGTCCCGGGCGGCAAAGCGGGCTGCGGAAG
TGGGCGAGGCGGCGGCGATTGCCCAAGCAGAGGCTGCACAGGTCGAGGCG
ATGAATGCCCGCGCTGCTGCAGATGTCATGAGCGCGGAGCTGGAGCGCCA
CAAGACGGCGGTGGAGGATCGAGTGACAGCGGAGGCTGCGGACTGGAGGA
AGGAGATACGGGACGAGCTCAGGCGATGGTGGCTAGAGGACTTGGTGGGG
CAGAGCAGAAGCAGACTGTGTAGAAATTTGGCCCCTGACGCTCTAAAAAT
CCTGGTTCGGACGCCTCGTTTTGAGGCTTGGGGATGAGCGTCGTGAGAAA
GGATATTGTTCGCTCACGGAAAAGACGCACCGTACGGACGGACGCGTCGA
TGATTGCGCGCGCGGTGGCGCTGGTTGACGATCAATTTTATTTTTACTCT
GCTGCAACTGCAACGGTTGGTATACACAATACGTCTAGCGTGCCGGAGAT
GGGCTGGCATGTCAAGTAGGGGATAATTGAAATCATCCCTTGAGGGATGG
TTCGACACGTGCCCTTGGGACAGATTTTTAACGTCCTCCCATTCTTCTTT
CGTTGATCGACTTTCACTTTGCTTATCGCCCGTCGTACCAACATACCACA
ACGCGCATGTCCTACCAATATCCCAGATGAACCTACACAACGGGGTCAGC
CTAAACTGGGGCAGCGTGGGAGGTGCGAACGAGACAGCTTCCGTCTGGAG
CGCCCCCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig132:817..1675+

>mRNA_F-serratus_M_contig132.2369.1 ID=mRNA_F-serratus_M_contig132.2369.1|Name=mRNA_F-serratus_M_contig132.2369.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig132:817..1675+ (Fucus serratus male)
ATGTTTGATCGTGCTGGCGGCTACGAAGAAGGGGATGGTAGCAACGGCAG
CAGTACAGCTGCCGAGGTAACTCTTCTGGAGAAACGCTTCGCGATGGCAG
TTGAAGAAGTCATTTCGTCCCGGGCGGCAAAGCGGGCTGCGGAAGTGGGC
GAGGCGGCGGCGATTGCCCAAGCAGAGGCTGCACAGGTCGAGGCGATGAA
TGCCCGCGCTGCTGCAGATGTCATGAGCGCGGAGCTGGAGCGCCACAAGA
CGGCGGTGGAGGATCGAGTGACAGCGGAGGCTGCGGACTGGAGGAAGGAG
ATACGGGACGAGCTCAGGCGATGGTGGCTAGAGGACTTGGTGGGGCAGAG
CAGAAGCAGACTGTGTAGAAATTTGGCCCCTGACGCTCTAAAAATCCTGG
TTCGGACGCCTCGTTTTGAGGCTTGGGGATGAATGTTTGATCGTGCTGGC
GGCTACGAAGAAGGGGATGGTAGCAACGGCAGCAGTACAGCTGCCGAGGT
AACTCTTCTGGAGAAACGCTTCGCGATGGCAGTTGAAGAAGTCATTTCGT
CCCGGGCGGCAAAGCGGGCTGCGGAAGTGGGCGAGGCGGCGGCGATTGCC
CAAGCAGAGGCTGCACAGGTCGAGGCGATGAATGCCCGCGCTGCTGCAGA
TGTCATGAGCGCGGAGCTGGAGCGCCACAAGACGGCGGTGGAGGATCGAG
TGACAGCGGAGGCTGCGGACTGGAGGAAGGAGATACGGGACGAGCTCAGG
CGATGGTGGCTAGAGGACTTGGTGGGGCAGAGCAGAAGCAGACTGTGTAG
AAATTTGGCCCCTGACGCTCTAAAAATCCTGGTTCGGACGCCTCGTTTTG
AGGCTTGGGGATGA
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