mRNA_F-serratus_M_contig1316.2354.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1316.2354.1
Unique NamemRNA_F-serratus_M_contig1316.2354.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1316.2354.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 3.900e-30
Identity = 65/145 (44.83%), Postives = 90/145 (62.07%), Query Frame = 1
Query:    7 NAQLWHRRLGHLNKRSLELMQRRDGNGVAFDGLIDYCDVCAVGISHQLTRLKKAKHAEITVPFQLVYGDLMGPFKPAACEGYEYLSRTTDHFTKWTVVSLLCTKDQALASLQLFVTSTVIPLGSRIVTWRVNKGGEYTSEDFKAY 441
            +A LWHRR+GH++ RSL+++++  GNGV ++G +  CDVCAVG S Q    K+A + + + PFQLV  DLMGPF P A  G+ Y+ +  D   KW  V L+  K   + +LQLF  S + P   R+   R +KGGEYTS  F  Y
Sbjct:  265 SAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASY-DASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKY 408          
BLAST of mRNA_F-serratus_M_contig1316.2354.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 7.330e-27
Identity = 58/148 (39.19%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    7 NAQLWHRRLGHLNKRSLELMQRRDGNGVAFDGLIDYCDVCAVGISHQLTRLKKAKHAEITVPFQLVYGDLMGPFKPAACEGYEYLSRTTDHFTKWTVVSLLCTKDQALASLQLFVTSTVIPLGSRIVTWRVNKGGEYTSEDFKAYFQE 450
            +A LWHRR+GH+N +SL+++++   NGV     +  C  CA+G S Q    K+A + ++  PFQLV+ D +GPF P A  G++Y ++  D  TKW  + L+  K  ++ SL LF   TV+P G  I   R + G E+TS +F+ Y+Q+
Sbjct:  525 SANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATY-DVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQD 671          
BLAST of mRNA_F-serratus_M_contig1316.2354.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.850e-26
Identity = 55/144 (38.19%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   10 AQLWHRRLGHLNKRSLELMQRRDGNGVAFDGLIDYCDVCAVGISHQLTRLKKAKHAEITVPFQLVYGDLMGPFKPAACEGYEYLSRTTDHFTKWTVVSLLCTKDQALASLQLFVTSTVIPLGSRIVTWRVNKGGEYTSEDFKAY 441
            A LWHRR+GH+N +SL++++++  +G+ + G +  C  C +G S Q    K A +  ++ PFQLV+ D +GPF P A  G++Y ++  D  TKW  V L+  K  ++ +L+LF   TVIP  +RI   R +KG E+T+  ++ Y
Sbjct:  573 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQY 715          
BLAST of mRNA_F-serratus_M_contig1316.2354.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.900e-26
Identity = 55/144 (38.19%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   10 AQLWHRRLGHLNKRSLELMQRRDGNGVAFDGLIDYCDVCAVGISHQLTRLKKAKHAEITVPFQLVYGDLMGPFKPAACEGYEYLSRTTDHFTKWTVVSLLCTKDQALASLQLFVTSTVIPLGSRIVTWRVNKGGEYTSEDFKAY 441
            A LWHRR+GH+N +SL++++++  +G+ + G +  C  C +G S Q    K A +  ++ PFQLV+ D +GPF P A  G++Y ++  D  TKW  V L+  K  ++ +L+LF   TVIP  +RI   R +KG E+T+  ++ Y
Sbjct:  695 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQY 837          
BLAST of mRNA_F-serratus_M_contig1316.2354.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.900e-26
Identity = 55/144 (38.19%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   10 AQLWHRRLGHLNKRSLELMQRRDGNGVAFDGLIDYCDVCAVGISHQLTRLKKAKHAEITVPFQLVYGDLMGPFKPAACEGYEYLSRTTDHFTKWTVVSLLCTKDQALASLQLFVTSTVIPLGSRIVTWRVNKGGEYTSEDFKAY 441
            A LWHRR+GH+N +SL++++++  +G+ + G +  C  C +G S Q    K A +  ++ PFQLV+ D +GPF P A  G++Y ++  D  TKW  V L+  K  ++ +L+LF   TVIP  +RI   R +KG E+T+  ++ Y
Sbjct:  573 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQY 715          
BLAST of mRNA_F-serratus_M_contig1316.2354.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 1.570e-25
Identity = 61/150 (40.67%), Postives = 91/150 (60.67%), Query Frame = 1
Query:    7 NAQLWHRRLGHLNKRSLELMQRRDGNGVAFDGLIDYCDVCAVGISHQLTRLKKAKHAEITVPFQLVYGDLMGPFKPAACEGYEYLSRTTDHFTKWTVVSLLCTKDQALA--SLQLFVTSTVIPLGSRIVTWRVNKGGEYTSEDFKAYFQE 450
            +A LWHRR+GH+N +SL+++++   NGV + G ++ C VC +G S Q    K+  +  +  PFQ V  D +GPF P A  G++Y ++  D  TKW  + L+  KDQA +  SL LF   TV+P G RI   R + G E+TS +F+ Y Q+
Sbjct:  285 SADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLR-PFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLM--KDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQD 431          
BLAST of mRNA_F-serratus_M_contig1316.2354.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.010e-24
Identity = 57/148 (38.51%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    7 NAQLWHRRLGHLNKRSLELMQRRDGNGVAFDGLIDYCDVCAVGISHQLTRLKKAKHAEITVPFQLVYGDLMGPFKPAACEGYEYLSRTTDHFTKWTVVSLLCTKDQALASLQLFVTSTVIPLGSRIVTWRVNKGGEYTSEDFKAYFQE 450
            +A LWHRR+GH+N ++L+++++   NGV + G + YC VC +G S Q    K+A +  +  PFQ    D +GPF P A  G +Y ++  D  TKW  + L+  +  ++ SL LF   TV+P G RI   R ++G E+TS +F+ Y Q+
Sbjct:   45 SADLWHRRMGHINGKNLDVLRKEQVNGVDYTGDVKYCSVCPLGKSAQQPHPKQATYGVLR-PFQ---HDTLGPFAPTALGGSKYATKFVDQQTKWAEIVLMKDETCSVDSLALFNKGTVVPTGERIHCLRGDQGTEFTSAEFRQYCQD 188          
BLAST of mRNA_F-serratus_M_contig1316.2354.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 2.300e-23
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   10 AQLWHRRLGHLNKRSLELMQRRDGNGVAFDGLIDYCDVCAVGISHQLTRLKKAKHAEITVPFQLVYGDLMGPFKPAACEGYEYLSRTTDHFTKWTVVSLLCTKDQ-ALASLQLFVTSTVIPLGSRIVTWRVNKGGEYTSEDFKAY 441
            A LWHRR+GH+N +SL++++++  +G+ + G +  C  C +G S Q    K A +  ++ PFQLV+ D  GPF      G++Y ++  D  TKW  V L+  K   ++  L+LF   TVIP  +RI   R  KG E+T+  ++ Y
Sbjct:  478 ADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYG-VSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSCSIDGLELFNKGTVIPRSARIHVLRAGKGAEFTNAAYRQY 621          
BLAST of mRNA_F-serratus_M_contig1316.2354.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 4.140e-23
Identity = 57/148 (38.51%), Postives = 80/148 (54.05%), Query Frame = 1
Query:    7 NAQLWHRRLGHLNKRSLELMQRRDGNGVAFDGLIDYCDVCAVGISHQLTRLKKAKHAEITVPFQLVYGDLMGPFKPAACEGYEYLSRTTDHFTKWTVVSLLCTKDQALASLQLFVTSTVIPLGSRIVTWRVNKGGEYTSEDFKAYFQE 450
            NA  WHR L HLN RS+EL+++++ NGV F   +  CD+CA+  S QL   +K    E T P QLVY D MG   P A  G+ Y+S+ TD ++    + LL    + + +L  +      PLG RI   R   GGE  + +F  YF +
Sbjct:  307 NANTWHRWLRHLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNR-ETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLKAISETVRALHAYNMQVAAPLGRRIEIIRCESGGENVANEFTKYFMD 453          
BLAST of mRNA_F-serratus_M_contig1316.2354.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 8.160e-21
Identity = 52/114 (45.61%), Postives = 74/114 (64.91%), Query Frame = 1
Query:    7 NAQLWHRRLGHLNKRSLELMQRRDGNGVAFDGLIDYCDVCAVGISHQLTRLKKAKHAEITVPFQLVYGDLMGPFKPAACEGYEYLSRTTDHFTKWTVVSLLCTKDQALASLQLF 348
            +A LWHRRLGH++ RSL+++++ D NGV + G ++ CDVCA+G S Q    KKA + +++  FQ V  DLMGP  P A  G+ Y+S+     TKW  + L+ TK  A+  LQLF
Sbjct:   36 SADLWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKATY-DVSRHFQ-VSTDLMGPISPPARRGFRYVSKFVHGNTKWKEIFLIKTKRDAIKILQLF 147          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1316.2354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE3.900e-3044.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE7.330e-2739.19Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJN3_9PHAE1.850e-2638.19Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.900e-2638.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.900e-2638.19Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KXM1_9PHAE1.570e-2540.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL37_9PHAE1.010e-2438.51Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYB5_9PHAE2.300e-2336.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYD3_9PHAE4.140e-2338.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE8.160e-2145.61CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1316contigF-serratus_M_contig1316:195317..195766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.4
Seed ortholog evalue2e-13
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size450
Cds size450
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929277.255338-CDS-F-serratus_M_contig1316:195316..1957661622929277.255338-CDS-F-serratus_M_contig1316:195316..195766Fucus serratus maleCDSF-serratus_M_contig1316 195317..195766 +
1690962780.5832-CDS-F-serratus_M_contig1316:195316..1957661690962780.5832-CDS-F-serratus_M_contig1316:195316..195766Fucus serratus maleCDSF-serratus_M_contig1316 195317..195766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1316.2354.1prot_F-serratus_M_contig1316.2354.1Fucus serratus malepolypeptideF-serratus_M_contig1316 195317..195766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1316.2354.1

>prot_F-serratus_M_contig1316.2354.1 ID=prot_F-serratus_M_contig1316.2354.1|Name=mRNA_F-serratus_M_contig1316.2354.1|organism=Fucus serratus male|type=polypeptide|length=150bp
MTNAQLWHRRLGHLNKRSLELMQRRDGNGVAFDGLIDYCDVCAVGISHQL
TRLKKAKHAEITVPFQLVYGDLMGPFKPAACEGYEYLSRTTDHFTKWTVV
SLLCTKDQALASLQLFVTSTVIPLGSRIVTWRVNKGGEYTSEDFKAYFQE
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mRNA from alignment at F-serratus_M_contig1316:195317..195766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1316.2354.1 ID=mRNA_F-serratus_M_contig1316.2354.1|Name=mRNA_F-serratus_M_contig1316.2354.1|organism=Fucus serratus male|type=mRNA|length=450bp|location=Sequence derived from alignment at F-serratus_M_contig1316:195317..195766+ (Fucus serratus male)
ATGACCAACGCGCAGCTGTGGCACCGCCGACTGGGACACCTCAACAAGAG AAGTTTGGAGCTCATGCAGAGGCGTGACGGCAACGGAGTCGCCTTTGACG GTTTAATCGATTACTGCGACGTCTGCGCCGTAGGAATAAGTCACCAACTG ACTCGCCTCAAGAAGGCCAAACACGCCGAAATCACGGTGCCATTTCAATT GGTTTATGGAGACCTGATGGGCCCCTTTAAACCCGCGGCTTGTGAAGGCT ACGAGTACTTGAGCAGGACCACCGATCACTTTACCAAATGGACCGTAGTC TCCTTGCTCTGCACCAAGGACCAAGCCCTCGCGTCGCTACAGCTATTCGT CACTTCAACCGTCATTCCGTTGGGCAGCCGTATCGTCACTTGGCGAGTCA ATAAGGGCGGTGAATACACCAGCGAAGACTTTAAAGCGTATTTCCAGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1316:195317..195766+

>mRNA_F-serratus_M_contig1316.2354.1 ID=mRNA_F-serratus_M_contig1316.2354.1|Name=mRNA_F-serratus_M_contig1316.2354.1|organism=Fucus serratus male|type=CDS|length=900bp|location=Sequence derived from alignment at F-serratus_M_contig1316:195317..195766+ (Fucus serratus male)
ATGACCAACGCGCAGCTGTGGCACCGCCGACTGGGACACCTCAACAAGAG
AAGTTTGGAGCTCATGCAGAGGCGTGACGGCAACGGAGTCGCCTTTGACG
GTTTAATCGATTACTGCGACGTCTGCGCCGTAGGAATAAGTCACCAACTG
ACTCGCCTCAAGAAGGCCAAACACGCCGAAATCACGGTGCCATTTCAATT
GGTTTATGGAGACCTGATGGGCCCCTTTAAACCCGCGGCTTGTGAAGGCT
ACGAGTACTTGAGCAGGACCACCGATCACTTTACCAAATGGACCGTAGTC
TCCTTGCTCTGCACCAAGGACCAAGCCCTCGCGTCGCTACAGCTATTCGT
CACTTCAACCGTCATTCCGTTGGGCAGCCGTATCGTCACTTGGCGAGTCA
ATAAGGGCGGTGAATACACCAGCGAAGACTTTAAAGCGTATTTCCAGGAG
ATGACCAACGCGCAGCTGTGGCACCGCCGACTGGGACACCTCAACAAGAG
AAGTTTGGAGCTCATGCAGAGGCGTGACGGCAACGGAGTCGCCTTTGACG
GTTTAATCGATTACTGCGACGTCTGCGCCGTAGGAATAAGTCACCAACTG
ACTCGCCTCAAGAAGGCCAAACACGCCGAAATCACGGTGCCATTTCAATT
GGTTTATGGAGACCTGATGGGCCCCTTTAAACCCGCGGCTTGTGAAGGCT
ACGAGTACTTGAGCAGGACCACCGATCACTTTACCAAATGGACCGTAGTC
TCCTTGCTCTGCACCAAGGACCAAGCCCTCGCGTCGCTACAGCTATTCGT
CACTTCAACCGTCATTCCGTTGGGCAGCCGTATCGTCACTTGGCGAGTCA
ATAAGGGCGGTGAATACACCAGCGAAGACTTTAAAGCGTATTTCCAGGAG
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