mRNA_F-serratus_M_contig1313.2344.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1313.2344.1
Unique Name	mRNA_F-serratus_M_contig1313.2344.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1313.2344.1 vs. uniprot
Match: A0A6H5KL22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL22_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.170e-10
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 1

Query:  133 PTEVDSHYRESVFKTPRRMREAVNSNSRNTEGVPSEDDKENVYCNTNGGFDSRKAVGACDTLEEQLLGKKRGGDEIAKQKSFTGSYFQVSPTSFLQPSKRQRN 441
            P E  +   +  +KTP R+R +  +++  T    ++ +   V     GG   R+   A +  ++Q+ G+KR G +I KQKSFTGSYFQVSP+SFL+ SKRQRN
Sbjct:   63 PLEGKTDNEDGSYKTPSRVRLSCETSAGGTAADGADKENSQVGAGLVGGGKKREGDAALEA-KKQISGQKRTGGDIEKQKSFTGSYFQVSPSSFLKSSKRQRN 164

[Close]

BLAST of mRNA_F-serratus_M_contig1313.2344.1 vs. uniprot
Match: D7FTX4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTX4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 3.220e-8
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1

Query:  133 PTEVDSHYRESVFKTPRRMREAVNSNSRNTEGVPSEDDKENVYCNTN--GGFDSRKAVGACDTLEEQLLGKKR-GGD-EIAKQKSFTGSYFQVSPTSFLQPSKRQRN 441
            P E  +   +  +KTP R+R +  +++  T      +DKEN        GG   R+     +  ++QL G+KR GGD +I KQKSFTGSYFQVSP+SFLQ SKRQRN
Sbjct:  275 PLEGKTDNEDGSYKTPIRLRLSCETSAGGT--ATDGEDKENSQVGAGFVGGGKKREGEAVLEA-KKQLSGQKRAGGDIDIEKQKSFTGSYFQVSPSSFLQSSKRQRN 378

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1313.2344.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1313.2344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5KL22_9PHAE	1.170e-10	40.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FTX4_ECTSI	3.220e-8	44.86	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1313	contig	F-serratus_M_contig1313:103789..106945 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-07_002730.1
Exons	4
Model size	1462
Cds size	273
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1313.2344.1	prot_F-serratus_M_contig1313.2344.1	Fucus serratus male	polypeptide	F-serratus_M_contig1313 105281..105942 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929274.559945-UTR-F-serratus_M_contig1313:103788..103848	1622929274.559945-UTR-F-serratus_M_contig1313:103788..103848	Fucus serratus male	UTR	F-serratus_M_contig1313 103789..103848 +
1690962779.5008898-UTR-F-serratus_M_contig1313:103788..103848	1690962779.5008898-UTR-F-serratus_M_contig1313:103788..103848	Fucus serratus male	UTR	F-serratus_M_contig1313 103789..103848 +
1622929274.5709279-UTR-F-serratus_M_contig1313:104479..104578	1622929274.5709279-UTR-F-serratus_M_contig1313:104479..104578	Fucus serratus male	UTR	F-serratus_M_contig1313 104480..104578 +
1690962779.5123682-UTR-F-serratus_M_contig1313:104479..104578	1690962779.5123682-UTR-F-serratus_M_contig1313:104479..104578	Fucus serratus male	UTR	F-serratus_M_contig1313 104480..104578 +
1622929274.5814495-UTR-F-serratus_M_contig1313:105253..105280	1622929274.5814495-UTR-F-serratus_M_contig1313:105253..105280	Fucus serratus male	UTR	F-serratus_M_contig1313 105254..105280 +
1690962779.5292752-UTR-F-serratus_M_contig1313:105253..105280	1690962779.5292752-UTR-F-serratus_M_contig1313:105253..105280	Fucus serratus male	UTR	F-serratus_M_contig1313 105254..105280 +
1622929274.6162624-UTR-F-serratus_M_contig1313:105942..106945	1622929274.6162624-UTR-F-serratus_M_contig1313:105942..106945	Fucus serratus male	UTR	F-serratus_M_contig1313 105943..106945 +
1690962779.558406-UTR-F-serratus_M_contig1313:105942..106945	1690962779.558406-UTR-F-serratus_M_contig1313:105942..106945	Fucus serratus male	UTR	F-serratus_M_contig1313 105943..106945 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929274.591621-CDS-F-serratus_M_contig1313:105280..105490	1622929274.591621-CDS-F-serratus_M_contig1313:105280..105490	Fucus serratus male	CDS	F-serratus_M_contig1313 105281..105490 +
1690962779.5403125-CDS-F-serratus_M_contig1313:105280..105490	1690962779.5403125-CDS-F-serratus_M_contig1313:105280..105490	Fucus serratus male	CDS	F-serratus_M_contig1313 105281..105490 +
1622929274.6034186-CDS-F-serratus_M_contig1313:105879..105942	1622929274.6034186-CDS-F-serratus_M_contig1313:105879..105942	Fucus serratus male	CDS	F-serratus_M_contig1313 105880..105942 +
1690962779.5499961-CDS-F-serratus_M_contig1313:105879..105942	1690962779.5499961-CDS-F-serratus_M_contig1313:105879..105942	Fucus serratus male	CDS	F-serratus_M_contig1313 105880..105942 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1313:103789..106945+
coding sequence from alignment at F-serratus_M_contig1313:103789..106945+

protein sequence of mRNA_F-serratus_M_contig1313.2344.1

>prot_F-serratus_M_contig1313.2344.1 ID=prot_F-serratus_M_contig1313.2344.1|Name=mRNA_F-serratus_M_contig1313.2344.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MREAVNSNSRNTEGVPSEDDKENVYCNTNGGFDSRKAVGACDTLEEQLLG
KKRGGDEIAKQKSFTGSYFQVSPTSFLQPSKRQRNTFSRE*

mRNA from alignment at F-serratus_M_contig1313:103789..106945+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1313.2344.1 ID=mRNA_F-serratus_M_contig1313.2344.1|Name=mRNA_F-serratus_M_contig1313.2344.1|organism=Fucus serratus male|type=mRNA|length=3157bp|location=Sequence derived from alignment at F-serratus_M_contig1313:103789..106945+ (Fucus serratus male)
AAAGATGACTTAGACACCGATCTATCTCCGGACAGCAAGGTGGAAGATGA
CACCACCCAGGCGAGGAATGTGTGCATTTTTTTTAATGATTAAAAGTTAC
CAATCCCACCTACTGCAACGTTGCCATTCTGCTAATGCCTTTGGTCACTA
TTAATAAAAGGATATTCGTATTTCTCCCCGGTTCTCGCCTACGTGTTTTT
ATCGCGATGCAAGTTCAGCACTCGTACATCTCGTTCACAAACTGTAACGG
TCAAATTTAACCTACTCACGAGGTCCCCACGCTTCCCGCCACCAATGGCG
ACCAATGGAAATAACAAATGGTACATGCGGCAAGCCAGAATAAAATTAAT
CATTTTGGCAAGATTCGAACTCATGACTCCGTCCGCAATCGTATAGTTGC
GACGTTACTGTATCCACTATAGCACTCCACGCGGGCCACGAGTACCTTGT
ACGTGCATATGTATCTATGTTTGTATGGTCATCAGAGAGTTGTGTATCTC
ATATGTATGTGAAATGGCCGATCGTGCAGGGTTCTTTGAAAAGGTTGCAC
AACTGTCACTGTTTATGCTGTAGTACAGTCGTATTATTAGTAGTAGTACA
GTTGGACGGTAATACAGAAGTTGTAGTACAGTATTAATTTAGTATTAATA
ACTGCGTGGCTATTTTGCTGTTTCATTTACTGGGGATACAGGAGAGTAGG
CCGAGGAAGTCGAGATCAACACCTCGCGACCCCCAGTCCCCACAACAAAA
TCAGGAGCAAGCGCCCACTGAGGTTGACAGCCATTATCGGGTGAGGTGCT
TAGTCGGCAGTACGGAAAGACGTGATTCAAATAGATTCGAACGCGGTTTT
TCACAGATCCCGTCGACACGAATCTCCGCGTGTCTATGCACCTGCAAGAT
AGCGAAAACCCTCCTGCATAGACAGTGCTTCCAAAATAGCCTGGAAATCG
TCATTAAGAGTAGTGGTTGATGTAACACATTATGAAGAGTAGTGGTTGAT
ATTTTAACCTGAGTGTGGAGAATGAGTAGGCTCAGGAGTAGCTGACCACG
AGCAGGATCAGTAACCATACGAGGTTGATCCATACTCTGCTATGTGATGA
CCATACCTGATTTTAAACTTACACGAGACAGCGTCCTTCTTTTTTAGAGG
GGTTTCGCCTCAGTTCGGCATGCGTGTTTGTGCAGTCGTAGTAAAGCTTT
TTATAGAATGGAATGGAGAGTGTTTGTGGCAATAATTCCGGTGTCGCGCT
TTATTTTCAGATAGTTTCTGACATCTACCATCCGGTAGAGCTCGGCGACG
ATTCCCCCTATTGTTCAGTACTGTATTGTAGTATATAAGGGGGGGGGGGA
CTCGTCTTTTCAACAGTATTAATACATTCATTAATACATCCATAACATTA
ACATCGCAGTCTTGCCGCGCGTACCACACACCTTAATTTGATATAACCCT
ATCTTATTCGATCAGGAAAGTGTCTTCAAAACGCCCCGCCGGATGAGGGA
GGCTGTTAATAGTAACTCTAGGAACACTGAAGGAGTTCCAAGCGAGGATG
ATAAGGAAAACGTCTACTGCAATACGAACGGAGGATTTGATTCAAGGAAG
GCGGTTGGCGCGTGCGACACGCTGGAAGAGCAGCTTTTGGGAAAGAAGCG
CGGAGGCGATGAGATTGCCAAGCAAAAGTCTTTCACTGGCAGCTACTTCC
AGGTCCATAGCAATTCATATGATATTAATAGTAGACTTACTTCACTTCGA
ATATATTAGAGTTTTATTTATAGTATAATATCACAGCAGGCGTGAAGGCT
GAATGCTACTCTTACACACAGCAGTTTTCTTTTTGCGTGGTCGTTAATCA
GATTGGATTGCTGGCGACGTCTCGGGAGGTGATTTGTAGTCATTATTATT
GTCAGCATAGACACCTCATGCGGTATGGGCAACATTAGTATTGCAGTATT
AATAGGTGGTACTGGTAACGTGGCACGTTAGTTTTGTTTCTATTAATATT
AATATGGGCAAAAAACGTTTGAACGAGCATACTGAACATCACTGATTCAA
ATCGATCCACGCCTTGTTATTACACGTTCTCGTCCGATCAGGTGTCTCCG
ACATCGTTCCTTCAGCCCAGCAAACGTCAGCGCAACACTTTTAGCCGGGA
GTGACGTGTGGCGTGTCGACTAGAGCTCTCCATGCTCAAGGCAATCGCGA
GGCAATCGTTTCTGCACTGTCGTAGAGCACTGAAATTTCTACTGTACTTG
TATTATTAATACAGTACTGTATAGGTATTGGCACGGTAGGTTTTATGGTT
AATGTCATGGGATCGGAACCTTAGTAACAAATCCATGGATTCCTGGTGAA
GGTGCCCGTTGAATGAAAATACCCCAGATTCGTTTATGGTTTGCTTGGTA
CAGACTAGTCTAGTATAATACCGCTTTATTTTCATTTTTGAGTTATGTAA
TTCACGTGCTTCGGTAATATTGGTGGTACAAGCAATGAGTAAGTGATTGT
GTTCGTACAGTCCAGGTACAGTACAGTATCTGCATCTCCGGGAAACGCCT
TACGAAGGCTTGTGACATCGCCCGCGAATAATTACTTATAATAGCGATAT
AGCTACTGCTATACTACCAGGTATTAATACCAAGATATTAGCTGGTACAA
CAGTTCTATGACGGATGATCCTCTTGTATTTTTGTTGTGGAATGGTTTTG
ATCGGCCGCGTTATTGAGTAATGGAAATACGTATAATTGAGGTATTAAGG
GCTAGTGCTAGAGCTACGCTGTAAAATAATAAAAGTGGTGTTTATTCTGG
TCTCTCGCCAATGGATTGTGATGATATATACGTGATGTTCTACGTAGTCG
TTAGGCTGAATGACAAACCGCGTGATTTTGCTGCAATACGTCGGCTTGAT
TCATAGTATTAGCACTTATTCATGGCATTAGCCTCTGAGAAGGGTTGTTA
TAATACCAACTTGCATTATGTATCGATTTACATGTACCCTGCACCTAGCT
AGCGTACTACACTTCGAACGTACAAAAAAGTACACTATGTCTAGGCTGTA
CATAGAAGTAGTCGCGTGTGTTTCTACAGGACGTTGGTGTTTTTGGGAGG
ATGAAATATACTGTATCAACAGTATCCCGATGGAACAATTCAGTAATAAT
TTACACC

Coding sequence (CDS) from alignment at F-serratus_M_contig1313:103789..106945+

>mRNA_F-serratus_M_contig1313.2344.1 ID=mRNA_F-serratus_M_contig1313.2344.1|Name=mRNA_F-serratus_M_contig1313.2344.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig1313:103789..106945+ (Fucus serratus male)
ATGAGGGAGGCTGTTAATAGTAACTCTAGGAACACTGAAGGAGTTCCAAG
CGAGGATGATAAGGAAAACGTCTACTGCAATACGAACGGAGGATTTGATT
CAAGGAAGGCGGTTGGCGCGTGCGACACGCTGGAAGAGCAGCTTTTGGGA
AAGAAGCGCGGAGGCGATGAGATTGCCAAGCAAAAGTCTTTCACTGGCAG
CTACTTCCAGATGAGGGAGGCTGTTAATAGTAACTCTAGGAACACTGAAG
GAGTTCCAAGCGAGGATGATAAGGAAAACGTCTACTGCAATACGAACGGA
GGATTTGATTCAAGGAAGGCGGTTGGCGCGTGCGACACGCTGGAAGAGCA
GCTTTTGGGAAAGAAGCGCGGAGGCGATGAGATTGCCAAGCAAAAGTCTT
TCACTGGCAGCTACTTCCAGGTGTCTCCGACATCGTTCCTTCAGCCCAGC
AAACGTCAGCGCAACACTTTTAGCCGGGAGTGAGTGTCTCCGACATCGTT
CCTTCAGCCCAGCAAACGTCAGCGCAACACTTTTAGCCGGGAGTGA