mRNA_F-serratus_M_contig1.16.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1.16.1
Unique NamemRNA_F-serratus_M_contig1.16.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1.16.1 vs. uniprot
Match: D7FY13_ECTSI (Ring finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY13_ECTSI)

HSP 1 Score: 212 bits (540), Expect = 2.880e-62
Identity = 111/174 (63.79%), Postives = 130/174 (74.71%), Query Frame = 2
Query:  668 DAEAASLALARQLLEEEAMASYAAAVDMFRNGGNGRGAXXXXGMAALEGIASEDXXXXXXXXXXXXXXXXXVAMAEDESLDYDGMLELGSAIGDVRQERWRLRCETVISSLPRMKYAAGRIAG-DDVKCLVCQCDFEGGEELRELPCKHAFHTDCVDGWLAQNEECPTCRRSIS 1186
            DAEA SLALARQL+EEEAMASYAAAVD FR+       XXXX    +EG+A ED                  AMAEDESLDYDGMLELGSAIGDVR++RWR+RC++VI++LPR+ Y AG  +G +D KCLVCQCD+E  +ELR LPC H FHT+CVDGWL +NEECPTCRRS+S
Sbjct:   31 DAEAESLALARQLMEEEAMASYAAAVDNFRSAAX----XXXXXXGGMEGVAPEDMAAMQALMEEDENNPDAFAMAEDESLDYDGMLELGSAIGDVRKDRWRMRCKSVIAALPRVSYTAGGYSGGEDTKCLVCQCDYEEDDELRILPCSHTFHTECVDGWLEENEECPTCRRSVS 200          
BLAST of mRNA_F-serratus_M_contig1.16.1 vs. uniprot
Match: A0A6H5KY69_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY69_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 4.520e-44
Identity = 93/164 (56.71%), Postives = 111/164 (67.68%), Query Frame = 2
Query:  668 DAEAASLALARQLLEEEAMASYAAAVDMFRNGGNGRGAXXXXGMAALEGIASEDXXXXXXXXXXXXXXXXXVAMAEDESLDYDGMLELGSAIGDVRQERWRLRCETVISSLPRMKYAAGRIAG-DDVKCLVCQCDFEGGEELRELPCKHAFHTDCVDGWLAQNE 1156
            D EA SLALARQL+EEEAMASYAAAVD FR+      A        L+G+A ED                  AMAEDESLDYDGMLELGSAIGDVR++RWR+RC++VI++LP++ Y AG  +G +D KCLVCQCD+E  +ELR LPC HAFHT  V G +   E
Sbjct:  201 DTEAESLALARQLMEEEAMASYAAAVDNFRSAA----AAARAAGGGLDGVAPEDMAAMQALMEEDENNPDAFAMAEDESLDYDGMLELGSAIGDVRKDRWRMRCKSVIAALPQVSYTAGGYSGGEDTKCLVCQCDYEEDDELRILPCSHAFHTGIVRGRVVGGE 360          
BLAST of mRNA_F-serratus_M_contig1.16.1 vs. uniprot
Match: A0A7S4HU52_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HU52_9STRA)

HSP 1 Score: 127 bits (318), Expect = 5.760e-29
Identity = 72/172 (41.86%), Postives = 92/172 (53.49%), Query Frame = 2
Query:  683 SLALARQLLEEEAMASYAAAVDMFRNGGNGRGAXXXXGMAALEGIASEDXXXXXXXXXXXXXXXXXVAMAEDESLDYDGMLELGSAIGDVRQERWRLRCETVISSLPRMKYAAGRIAGDD-----VKCLVCQCDFEGGEELRELPCKHAFHTDCVDGWLAQNEECPTCRRSI 1183
            S ALAR L+ EEA ASY  + D  RN  +         +AALE   +E+                 VA    E L YD +L L   IGDV+QERW ++ E  I SLP +++ +    G D     VKCLVCQC +E G+ LR LPC H FH +CVD WL+  + CP CR+SI
Sbjct:  157 SEALARHLMAEEAFASYNISTDFLRNNAD---QYSEEDLAALEAAMAEEDDVGEEID---------VADQPSEELSYDALLRLSERIGDVKQERWTMQAEKHIKSLPTVQFVSAISQGKDENDSAVKCLVCQCQYEEGDILRNLPCGHCFHRECVDPWLSTKDICPYCRQSI 316          
BLAST of mRNA_F-serratus_M_contig1.16.1 vs. uniprot
Match: A0A836C9F1_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.250e-27
Identity = 55/105 (52.38%), Postives = 68/105 (64.76%), Query Frame = 2
Query:  893 EDESLDYDGMLELGSAIGDVRQERWRLRCETVISSLPRMKYAAGRIAG--------DDVKCLVCQCDFEGGEELRELPCKHAFHTDCVDGWLAQNEECPTCRRSI 1183
            E+  ++YD +LELG AIGDV+QERWRLR    I+ LPR K AA R  G         D KCLVC C++E GEEL  LPC H +H  CV  WLA+ + CP C+RS+
Sbjct:  120 EETPMEYDALLELGEAIGDVKQERWRLRAPAAIARLPR-KRAAARSPGAAAAAACITDAKCLVCMCEYEAGEELMALPCGHDYHASCVAAWLARADACPLCKRSV 223          
BLAST of mRNA_F-serratus_M_contig1.16.1 vs. uniprot
Match: A0A7S2YQL4_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YQL4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 8.280e-26
Identity = 71/175 (40.57%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  683 SLALARQLLEEEAMASYAAAVDMFRNGGNGRGAXXXXGMAALEGIASEDXXXXXXXXXXXXXXXXXVAMAEDE--SLDYDGMLELGSAIGDVRQERWRLRCETVISSLPRMKYAAGRIAGD----DVKCLVCQCDFEGGEELRELPCKHAFHTDCVDGWLAQNEECPTCRRSISE 1189
            SL LAR L+ EEAMASY  +V   R+    R         ALE    E+                 VA  EDE  +L Y+ ML+LG  IGDV+ ERW +  +  I+ LP   +   +I  D    + KCLVCQ ++E GE LR LPC H FH +CVD WL + + CP CR +I E
Sbjct:    9 SLELARMLMAEEAMASYQHSVQYLRDS---RDQLSQEDYQALEAALQEEEAEQEGAA---------VAELEDEEGNLSYETMLQLGERIGDVKSERWTVVAQKHIAKLPTEIFDNNKIKKDADDSESKCLVCQHEYECGENLRRLPCGHCFHMECVDQWLERTDLCPYCRTAIRE 171          
BLAST of mRNA_F-serratus_M_contig1.16.1 vs. uniprot
Match: A0A7S1YU58_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YU58_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.200e-25
Identity = 64/170 (37.65%), Postives = 89/170 (52.35%), Query Frame = 2
Query:  692 LARQLLEEEAMASYAAAVDMFRNGGNGRGAXXXXGMAALEGIASEDXXXXXXXXXXXXXXXXXVAMAEDESLDYDGMLELGSAIGDVRQERWRLRCETVISSLPRMKYAAGRIA------GDDVKCLVCQCDFEGGEELRELPCKHAFHTDCVDGWLAQNEECPTCRRSI 1183
            LARQ++ EEAMASY  + +  R+  +   +     +AAL+   +E+                         L YD +L LG  +GDV+QERW +  +  IS LP  K++    A        +VKCLVCQC +E G+ LR LPCKH FH +CVD WL   + CP CR++I
Sbjct:  135 LARQMMAEEAMASYNMSANFLRDHADNYSSED---LAALQAAMAEEDSEEEEFDE-----------GPSAELSYDTLLRLGERLGDVKQERWAMVAKEQISKLPTFKFSTCEEATLKDRDDSEVKCLVCQCPYEEGDLLRRLPCKHCFHAECVDQWLMNKDVCPYCRQAI 290          
BLAST of mRNA_F-serratus_M_contig1.16.1 vs. uniprot
Match: A0A1E7FQW7_9STRA (RING-type domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQW7_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.230e-23
Identity = 60/175 (34.29%), Postives = 91/175 (52.00%), Query Frame = 2
Query:  683 SLALARQLLEEEAMASYAAAVDMFRNGGNGRGAXXXXGMAALEGIASEDXXXXXXXXXXXXXXXXXVAMAEDESLDYDGMLELGSAIGDVRQERWRLRCETVISSLPRMKYAAGRIAGD------DVKCLVCQCDFEGGEELRELPCKHAFHTDCVDGWLAQNEECPTCRRSISE 1189
            S+ LAR ++ EEAM +YAA +D  R+    +       +AA +    +D                 ++      + Y+ ML+LG  IGDV+ ERW  R +  I +LP +K+   +I         D KCL+CQ ++  GE+LR+LPC+H FH +CVD WL   + CP CR S+ +
Sbjct:   79 SIELARAMMAEEAMGAYAAHMDYLRHN---QDQFSEEDLAAFQIAMDDDEQEANTINDTEEDNGQDIS-----GMSYEAMLQLGERIGDVKTERWARRAQKTIDTLPIIKFDREKINNKTNTNQCDTKCLICQEEYCTGEDLRQLPCRHCFHQECVDQWLLTKDFCPYCRTSLEK 245          
BLAST of mRNA_F-serratus_M_contig1.16.1 vs. uniprot
Match: A0A1Z5KIZ8_FISSO (RING-type domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KIZ8_FISSO)

HSP 1 Score: 108 bits (269), Expect = 4.080e-23
Identity = 64/179 (35.75%), Postives = 88/179 (49.16%), Query Frame = 2
Query:  668 DAEAASLALARQLLEEEAMASYAAAVDMFRNGGNGRGAXXXXGMAALEGIASEDXXXXXXXXXXXXXXXXXVAMAEDESLDYDGMLELGSAIGDVRQERWRLRCETVISSLPRMKYAAGRIAG-------DDVKCLVCQCDFEGGEELRELPCKHAFHTDCVDGWLAQNEECPTCRRSI 1183
            DAE  S+ALARQL+ EEAMASY ++  + +               AL+    ED                 V   E +   Y+ +L+L   IGDV+ ERW  R    I+ LP   +++             + KCLVCQC++E GE+L  LPC+H FH DCV  WL + + CP CR+ I
Sbjct:   58 DAEEESIALARQLMAEEAMASYQSSFQLLQQHAT---QFSPEDYQALQAAMMEDDDQLAQLNDE-------VDEDEGDGSAYETLLDLSERIGDVKAERWSWRAPHEIAKLPSFVFSSVATPSAVTTRDDSECKCLVCQCEYENGEQLCRLPCQHTFHMDCVQPWLMKKDVCPYCRQCI 226          
BLAST of mRNA_F-serratus_M_contig1.16.1 vs. uniprot
Match: A0A7S0GIG7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GIG7_9STRA)

HSP 1 Score: 107 bits (266), Expect = 5.140e-23
Identity = 62/173 (35.84%), Postives = 87/173 (50.29%), Query Frame = 2
Query:  683 SLALARQLLEEEAMASYAAAVDMFRNGGNGRGAXXXXGMAALEGIASEDXXXXXXXXXXXXXXXXXVAMAEDESLDYDGMLELGSAIGDVRQERWRLRCETVISSLPRMKYAAGRIAGD-----DVKCLVCQCDFEGGEELRELPCKHAFHTDCVDGWLAQNEECPTCRRSIS 1186
            S ALAR L+ EEA+ASY+ +   F++  +   +     +AAL+    ED                  A  +   L YD +L LG  IGDV+QERW      +I  +    +       +     D KCL+CQ  +E  + LR LPCKH FHTDCVD WL + + CP CR+S++
Sbjct:   39 SEALARLLMAEEAVASYSMSSTFFQDNADNYSSED---LAALQAALEEDEFDENEIEED--------ADVDTSDLSYDALLMLGERIGDVKQERWTHIANGIIDKMRVSTFCKSDTDEETSHDCDEKCLICQFPYEDNDTLRHLPCKHTFHTDCVDKWLQKKDFCPYCRQSVA 200          
BLAST of mRNA_F-serratus_M_contig1.16.1 vs. uniprot
Match: A0A7S2P243_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P243_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.630e-21
Identity = 47/101 (46.53%), Postives = 61/101 (60.40%), Query Frame = 2
Query:  893 EDESLDYDGMLELGSAIGDVRQERWRLRCETVISSLPRMKYAAGRIAGDD----VKCLVCQCDFEGGEELRELPCKHAFHTDCVDGWLAQNEECPTCRRSI 1183
            ED  L YD ML +   +GDV+ ERW L+ +  I  LP+  Y       +      KCLVCQC +E GEELR LPCKH FH++CVD WL+  + CP CR+ +
Sbjct:  234 EDSELSYDTMLRIAERVGDVKTERWVLKSKDEIEKLPKFVYEGHEKIKEHNDSTSKCLVCQCPYEMGEELRALPCKHCFHSECVDHWLSTKDFCPYCRQPV 334          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY13_ECTSI2.880e-6263.79Ring finger protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A6H5KY69_9PHAE4.520e-4456.71RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S4HU52_9STRA5.760e-2941.86Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A836C9F1_9STRA5.250e-2752.38RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A7S2YQL4_9STRA8.280e-2640.57Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1YU58_9STRA2.200e-2537.65Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FQW7_9STRA1.230e-2334.29RING-type domain-containing protein n=1 Tax=Fragil... [more]
A0A1Z5KIZ8_FISSO4.080e-2335.75RING-type domain-containing protein n=2 Tax=Fistul... [more]
A0A7S0GIG7_9STRA5.140e-2335.84Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2P243_9STRA1.630e-2146.53Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1contigF-serratus_M_contig1:412715..421727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score213.4
Seed ortholog evalue1.5e-52
Seed eggNOG ortholog2880.D7FY13
Preferred nameRLIM
KEGG koko:K15701,ko:K16271
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007549,GO:0008150,GO:0008152,GO:0009048,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0040029,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043433,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051090,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0060816,GO:0061630,GO:0061659,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071704,GO:0080090,GO:0140096,GO:1900095,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein modification by small protein conjugation or removal
EggNOG OGsKOG4628@1,KOG4628@2759
Ec32 ortholog descriptionZinc finger, RING-type
Ec32 orthologEc-08_004670.1
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons8
Model size1641
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1.16.1prot_F-serratus_M_contig1.16.1Fucus serratus malepolypeptideF-serratus_M_contig1 413161..421426 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928774.7859643-UTR-F-serratus_M_contig1:412714..4131601622928774.7859643-UTR-F-serratus_M_contig1:412714..413160Fucus serratus maleUTRF-serratus_M_contig1 412715..413160 -
1690962563.300997-UTR-F-serratus_M_contig1:412714..4131601690962563.300997-UTR-F-serratus_M_contig1:412714..413160Fucus serratus maleUTRF-serratus_M_contig1 412715..413160 -
1622928774.8853767-UTR-F-serratus_M_contig1:421426..4217271622928774.8853767-UTR-F-serratus_M_contig1:421426..421727Fucus serratus maleUTRF-serratus_M_contig1 421427..421727 -
1690962563.3967872-UTR-F-serratus_M_contig1:421426..4217271690962563.3967872-UTR-F-serratus_M_contig1:421426..421727Fucus serratus maleUTRF-serratus_M_contig1 421427..421727 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928774.8050163-CDS-F-serratus_M_contig1:413160..4132311622928774.8050163-CDS-F-serratus_M_contig1:413160..413231Fucus serratus maleCDSF-serratus_M_contig1 413161..413231 -
1690962563.3140242-CDS-F-serratus_M_contig1:413160..4132311690962563.3140242-CDS-F-serratus_M_contig1:413160..413231Fucus serratus maleCDSF-serratus_M_contig1 413161..413231 -
1622928774.8131301-CDS-F-serratus_M_contig1:413703..4137801622928774.8131301-CDS-F-serratus_M_contig1:413703..413780Fucus serratus maleCDSF-serratus_M_contig1 413704..413780 -
1690962563.3240087-CDS-F-serratus_M_contig1:413703..4137801690962563.3240087-CDS-F-serratus_M_contig1:413703..413780Fucus serratus maleCDSF-serratus_M_contig1 413704..413780 -
1622928774.8215668-CDS-F-serratus_M_contig1:414155..4142271622928774.8215668-CDS-F-serratus_M_contig1:414155..414227Fucus serratus maleCDSF-serratus_M_contig1 414156..414227 -
1690962563.3329036-CDS-F-serratus_M_contig1:414155..4142271690962563.3329036-CDS-F-serratus_M_contig1:414155..414227Fucus serratus maleCDSF-serratus_M_contig1 414156..414227 -
1622928774.831028-CDS-F-serratus_M_contig1:414900..4149591622928774.831028-CDS-F-serratus_M_contig1:414900..414959Fucus serratus maleCDSF-serratus_M_contig1 414901..414959 -
1690962563.3436124-CDS-F-serratus_M_contig1:414900..4149591690962563.3436124-CDS-F-serratus_M_contig1:414900..414959Fucus serratus maleCDSF-serratus_M_contig1 414901..414959 -
1622928774.8438807-CDS-F-serratus_M_contig1:416323..4165211622928774.8438807-CDS-F-serratus_M_contig1:416323..416521Fucus serratus maleCDSF-serratus_M_contig1 416324..416521 -
1690962563.3567407-CDS-F-serratus_M_contig1:416323..4165211690962563.3567407-CDS-F-serratus_M_contig1:416323..416521Fucus serratus maleCDSF-serratus_M_contig1 416324..416521 -
1622928774.857254-CDS-F-serratus_M_contig1:417221..4174361622928774.857254-CDS-F-serratus_M_contig1:417221..417436Fucus serratus maleCDSF-serratus_M_contig1 417222..417436 -
1690962563.3660312-CDS-F-serratus_M_contig1:417221..4174361690962563.3660312-CDS-F-serratus_M_contig1:417221..417436Fucus serratus maleCDSF-serratus_M_contig1 417222..417436 -
1622928774.866932-CDS-F-serratus_M_contig1:420539..4206691622928774.866932-CDS-F-serratus_M_contig1:420539..420669Fucus serratus maleCDSF-serratus_M_contig1 420540..420669 -
1690962563.3740225-CDS-F-serratus_M_contig1:420539..4206691690962563.3740225-CDS-F-serratus_M_contig1:420539..420669Fucus serratus maleCDSF-serratus_M_contig1 420540..420669 -
1622928774.8760724-CDS-F-serratus_M_contig1:421354..4214261622928774.8760724-CDS-F-serratus_M_contig1:421354..421426Fucus serratus maleCDSF-serratus_M_contig1 421355..421426 -
1690962563.3832693-CDS-F-serratus_M_contig1:421354..4214261690962563.3832693-CDS-F-serratus_M_contig1:421354..421426Fucus serratus maleCDSF-serratus_M_contig1 421355..421426 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1.16.1

>prot_F-serratus_M_contig1.16.1 ID=prot_F-serratus_M_contig1.16.1|Name=mRNA_F-serratus_M_contig1.16.1|organism=Fucus serratus male|type=polypeptide|length=298bp
METPGRTNHHTALVESQNILQDEPVGANPSQHSSYTKSSSMDSKISSGVS
CASAAAAAATADVVAVEAAKPATGVEESQSTARAGAGTRAAAPSASVAAA
EESGRGSPERAGDPGAGEVAGEDAEAASLALARQLLEEEAMASYAAAVDM
FRNGGNGRGAGEGEGMAALEGIASEDMAAMQALLQEDENASNAVAMAEDE
SLDYDGMLELGSAIGDVRQERWRLRCETVISSLPRMKYAAGRIAGDDVKC
LVCQCDFEGGEELRELPCKHAFHTDCVDGWLAQNEECPTCRRSISET*
back to top

mRNA from alignment at F-serratus_M_contig1:412715..421727-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1.16.1 ID=mRNA_F-serratus_M_contig1.16.1|Name=mRNA_F-serratus_M_contig1.16.1|organism=Fucus serratus male|type=mRNA|length=9013bp|location=Sequence derived from alignment at F-serratus_M_contig1:412715..421727- (Fucus serratus male)
CTAAAAGCAGTCTTCACATCTTTTGAGCCGGCGGACACCTGGAACAGGAC AAAAGCACAAGGGAGAAGTTTTGGCCTTCTAGATAAGAGGATCATCGCCT CCACCGGCGGACGTCGCACACCAGAATCATCGTGTTTGATCGAAAGAGTC CGCTTGCTGTGTTTTGCTGGGTTTGGTGACCTGGTGGTGTTCCAGCGTTC CGTTAGTCGATCCCGTTCGGGATTTTGGACTTTCCGACCTGCCTCGGGAA TTTACAACGGCCACCATCTCAAGCCGGCAAGAGGTCTACTCGCCTACAAA AATGGAGACTCCGGGGCGAACGAACCATCATACTGCGTTGGTGGAGTCGC AAAATATCCTCCAGGATGAGCCGGTGAGTATTGGCCTCGGTGGCACACGT GTGTACGGTTATTGTCTTTAAATCCTTTTCGGAATCCGTATACTTATCCT GAAACCTACATCCATCCACTCGAGACGCAGGAGTCGACCGAGCTACAGGT TCGCAAGTTAATAATTAAACTTGAGGATTCAAAAGCGGCTTCGCGATGTA GGCATCTGCCCGAGGATCCCAACCGCCGGCAGCTAGCACGTTTGCCGCAC ACCACCCACGAAGCGTTCCGACGTTCGTAGATATAAAACTGCTGTTCAGT CAGTACATCAGTGCCCAGGTGCCCCCGGGTCGATTTTGAACAACGCTAAT CTCCCATGAGGCCATTTTACTTGTTTTTACTCCATAACAGTTGTACCGGT TGAGCCGATGGGCGCCTGCCTACCCACATCGCTTTACACATTCAGCTCAC TCCTCGTACGTACCGTCGCAGCATCCCGTGAAGACGCGTGGCTCGCAGCA TCCCACGTGTCTCTATTATCAGATTCACGATGGGGGAAGAAGCACCAAAC AGACAGGAAAACCCCCAAGCATAAGGATACCTGTTTCCCTCTGGCATTCT TTTCAGCTGCAGAGAAAAACGAAATCATGGCATATTAGAAAGCTCGGATC CCTTCTTCCTTCCTTCTTCTTACCTTCGTTGTCATTCAAAACCCTCGCCT TGTTTCAGGTCGGCGCAAATCCATCACAGCACTCTTCCTATACCAAGAGC AGCAGCATGGACTCGAAGATCTCTTCCGGTGTCTCTTGTGCTTCAGCCGC CGCTGCGGCGGCTACTGCTGATGTTGTCGCGGTCGAAGGTAGGCATGCAA GGAGGTTCCGTTGCCACTCTTCAAGACGAACTACCGGTAATTGTCTATCT AGTACAGAGTATGCCGACTGGGCCGGTACACCAAAATGCTGAGCGGAGAA GGAAGAAAAACAAAAACAAAATTATGTTGTGACGATGCACTGCTTGTTGT ACACTTGAAGCACAGAGTACCAACCAGGTCGCCCCGGTAGCTCAGAGGTA ACCTCGTAACCTTCTGACACGTTGGGACGTGAGTTCGAATCTCGTAAACG GGATTTTTCCCACTAATATATACTGTATAGTATATATATATATATATAGA TACCCAACAAATGGAGAACGATCGAATCGTTAGTACACAAAATTCGACTT CACGGTCGAAGAGGGAAAGGAACAGCTGAATCCTTCTCGCGAGAAAAATA AAGGCACGCACCGCAGAAGGAAGGTGGATGAGAAATCCTGTGTGACCTTC CTCCTGTGTGACCCCGGCTGGTACGTCCAACGAACTTGGTGTATCATACA GATTAAATGAGAAGAAAACATACTCGTATAAAACACACACCCAAGAAAAA TAAGAAAAGTCAGGTGAATGGTGGGTGGAAGCGCACGCGAAAGAAACCCA TCATTACACGCGACAGGGACGTCTCAAAGATGAAGGCACGCTGCTGTGCG TACCTGTAGAGAGAGACATGCAGTGCGACAGACCAATAGAGCTAGACATC ATGCAGAAGCAGAGCTACTCGTAAGGCTGCAGTGTGTAGGCAGTATGCAT CTAAACTGCGTGTTCATAAACCGTCAGCATCCTAATAATATTAGGCTCTA CAGTAGTAGGATACAGTATGCTGTTGATGGCAGTATCCATTCAAACACGG GTAATTGGTGCTATTCATAGGACATTGTATCTGTGATTCTGGTGTGAGTT CTTGGTTTGAGATCTGCTGCGGGCAGTGAGTGTATCTTGGTTCGTTGGTT TGAAGTCGCCCTTACAAAGGCAGGCGCTACGAAAGCGCGCCTCGTCGATC CATCCAACCGCAACCTCGAGCACCACAGCAGCGTTCTCCAACGCCTTTCG TTATCCTTCCCTACTTTTTTTTGCCCTACCCCCTGTTCTTCTTTCTTCCT CCAACCTCCAAGCCTCCAAGGGCCAATGGTAAAGCTCCTCCCCCCTCCAT CCCCCTCGTCCCTCTTAACAACATTGTTACTATACTGTACTGTACTAGTA CTGTTCGCCCTTGTGTAAGGCTTGGCCAAGGAATTCCAAGTCTCCCGAAA CACCGAAAGCTTCGACATCCTTCTACGCTCAGCCTGCCCACTATTTCCCA TTCCCTCCTCGACCCCTTGCTCCTCGCGTCACCTAGGGCCAATGCCCCAG AGATGAACCGCCGGGGTAAAAGCTCTTGCCAGCGGGCGTGCTCGGCGTGC ATTCGTCCCTATGGCTTGGTCTCCTAGATGACCTCCCGCATTAGGCCCTG TCTCAACGAACGACTAGATAGAAAAAAGTTCTTAGAATCTGTCGGGTGAT AAATTCCGTCAACAGGTCCTACTTTGGGTCCAAACGACCATATTAGGCAA TGCGGTGTCACTAGACAGTCACGCCTCCGAATCATTTTCAACACCTACAC ACTGGTGAGGGCGGACAGCGTAACGAGGTTCGATATCGCTCGAACCTCGA CCTTGCGCCCTCCTCGAAGCTCCGCTACTATGACAGGCGCTCGGCGAGCG GACATTCAAGCCTCCCCATAAACCGTGACTTGACTTGTCAACAAACTGCA ACAAACTACTTACTACGTACAACCAAAGTAGGGCATTGACGGAGCACCAG AGGTTTCTTGGCGTTTCACAAGCTCCTAAAACGGTTTAGGAAATCCCGAC TGCTCGAGCAGTGCATGGTACCTCGCGCGTTGTTTGTGGGTGTCGAGAAT ACATCAAAATCGGTGTACGCGTCGGACTCGCAATCGCTGTTGTCCAGACC CAGCGTCAACGGCACGTACTTTAGAAATACCCAAGAAAACCATCTACTCG GGTATCAGTTAAACTGATTGCAGTACGTAGCAGCTGTTGTCTTTTTTTTT ATCGGTATCAGTTGTATTACTGCTTCCAGTATTTAGCAGCTGATGCCCTT TTATTTTTTGGTCTCAGTTGTTCTGTTTCTAGTACGAAGCAGGTGTGTGT GTGTGTGTGTGTGTGTTTTTTTTTCTTGCCCTCGAATCATTTCGCACAAC AGAATTTACCTGAAACAGAAAAAAAATGTCGGTGGACAGATTATATTAAA TGTCAAAAGTTAGAATCTGTCCACCGCCAGATTCTGTCGTGTTGTGCCGA CTAGTATTAATAGTGTCGAGCTCAATTTGGCCAATCACAGAGCTCTATTT TCAACAGATTATTTCGACAGATTCTATGAACAAGTTCTATCTCGTCGTTA AGACAGGGCCATCGACATTTTATTTTATTTTTTACCGAATGAGTCAGCGC GTACTTGTAGACCGACCAAGATTTGTAGGGGGAGCACAAGGCACTCAGGG GTCAAGTAAGAATTGTACAAGTAGAGATGGTGTGTCCCTTCTGTCGCGTC TGATCAGATATTTTCGTAATAAGTATCACTGATCCCCCCTTGGGAGGATC AATGCGAGTGGCATAGGATGACAGGACCGGATTGCGCGGCTATGTGCAAT TTAATAAATACACGCACACACACATACACAAAACAAATGTCCTTACAAGT AGGGACGTTTCAAAATAATTGGGCCGAGTTGTTATTACTTCAGCAGATTG GGTATCAACCGTGTACATTTTACATTTGCGAATTCTGGAGAAAAAAAAAT CTGTCTCTCTCTTTGTTATTCATATTTACCAAAGTGATACTTATTTGAGC AATGAACAAAATTGATAATAAGTTTGCGTAGGCAAGTGCTCGCGCAAGCG AACGTGGCTCGTCCAAATCCATACCAGGCACCAGGTACAATTTATCAGAT ACTAGTTTTATATTAATACTGTACTCAAGTATTGTTAAACAATACCACCC CTTTTTGCGTCGCCCCCATCCCTCCCCCCACCGCACGCTACGGTGACGTC ACTCCAAACTGTCGACATATAAATTACCTTGCGGGCCGCAGCGGCAAAGC CAGCGACGGGAGTCGAGGAGAGTCAGTCCACGGCTCGCGCAGGGGCAGGG ACAAGGGCAGCAGCGCCTTCGGCTTCCGTCGCCGCTGCAGAAGAAAGCGG GCGCGGAAGCCCCGAGCGTGCAGGCGATCCTGGTGCGGGCGAGGTGGCGG GGGAGGACGCGGAGGCCGCCTCCTTGGCGCTGGCCAGACAGCTACTCGAA GAGGAGGTATGGGTCTGGTTTGTACTCGGAGCATTAGGTTTGGCTGCCTC GATCAACTCATCTGTTTTATAAACACCGCCTCAACCTGGTGTTAATATGT TTTTTTGTTTTGTTTTGAGGATCGTGATGAAGAATTAAATAGAAACAGTG TATTTTTCTAGGGGGGGGGGGGTGAATGAAGAAATCGTGAATCGACTCTC ACTATCCGAGGCTTACCGATCGAAGGGTTTGTTACTTATTTCTTTCAGTT AGCATCTTTAAAAAACGCTGTGTTTTTATGGTCACGTTTTTTATTCATTT TTTCATTTATAGTATTTGTACCAGTTATATTCTATTTTATATTTTTTCAT TTATTGCATGCATTCGTTCATTCATTTTTTGTGTGCATTGTTATTATTAT TATTTGTTTTTATTTCATTTACAGTAATTTTACCAGTTACATATATACAC CTACAGTATATACATTTTCATTTGTTGCATGCAATCGTTCATTCATCCGT TTATTCATTTTTTAAGAGTAGATTTGCATTGTTTCGTAACGGAATCATTA TAATTATTTGTTGACTTTATTTGTCTTGCATTATTTGTCAACCGGGGAGA GATGGGAAGATCCTTTGTGATAAACCATCGACTATCCATTATTGTCATAT TATAAACAGCATCCATTACTCCTTTTTATCTCTCATGCCTGCGGCTGGTC GATCAGGCGATGGCCTCTTACGCCGCGGCGGTGGACATGTTCCGCAATGG AGGGAATGGGAGAGGCGCTGGTGAAGGCGAGGGCATGGCCGCATTGGAGG GAATAGCCTCCGAGGATATGGCGGCGATGCAGGCCTTGCTGCAGGAGGAC GAGAATGCCTCGAACGCGGTCGCGATGGCGGAAGACGAGTCGCTAGACTA CGACGTGAGCCATCCGACCACAGATGTGGGAAAGGAAAAAGAAAGATTCA AAATAATCTTAGGAACACGGCGCGTCGCAGATGTATAGTGTATAGTGTAT AGTGTATAGGCCATATCGAACAAGATAACATCATTTTTTCTTCTTGTTGG GAGCAAATAGGCCATATCGAAGTACTCATACCTGGTGTAAACGAAAAAAC ACAAATTCTGCATAGAATCGAACTAGACTACTAGCAGTCAGTGATTGACG TAGTACAGGTCTTTTGTGTCCGAGTACATAACACATGTTTTGCTGGTACA GGCGGTTACTGCACGCAGCTTCCGCACGTATATATATATATATATGTGTG TGTATAATTATTTTGCTAATTTTTGACGATTCCGCTTACTAAGTTTCAGT GTCAATTTTCATCCGAAATAGTATTCATGGCCTCCTCGAGCCGGCAAAAA AAATGAGCAGCCGCACCGATGGAACAAACTGTTAATGTTAAAGTTAACAA GTGATTGTATGCAAAGCATGCTGGTACGATGTTTTTTTTGTTTTTGTTTT TTATCCCCAGAAGACCAGGGGTAAAAAATGGCCGCCACCTTCCACCCGTG GTACAGTACGATGGTTGACCCTGAGGTATCCCCGGAACAGACATGCATCC TGGGAAGGTTTCCAGTGTGTTTTGGGTCCGTTCGTCCAGATAAAAAGGGC ACACATGGATTGTGGCGAGGTTCCTTGTCCGCATCCCTCTGACTCACGCC GTGAAGCGAGTTCGTCAGGGCTTTTGCCTCCAGAGCAACCTCGCGCGGCA ATATATCACATCAGCGTCGACGATGGTTACTATTTATTGTTCTCTCTCTT TTGTGAGAGATGGTATTTAAAGAAAATCTGTACTATATAGTGATCGTCGA CTTGAAAAAAAAAAAAACGGCTGGCGTAGCGTAACGTATTAAACTCGAAA CCCTTTGTTTTACTATTATGTTTAATACAGTAGTACTTCGTAGCAACAGC GAGTTGTGTTAGCCGTATTAGGTAAAGTATCGCTGGTGTAGTTCACTCAC GTCTTTTTCTCGAAAGTCTCTTTTCTTCGTCTCTTATTTATCCCATATAA AGTCATAGTCTACACGCATATACCCTGTCGGCAATGTAGATGATTGGACA AAAGGCTGCCTCCCTTCCATGCCATATGATTCAACTGTGACCCCCCCCCA AAAAAAACTGAAAAAAAAACTCAGAAAATACAAAAATAAGCTTTCTTTTC TGGGCGCTCATCACCAGTCATCGTTACTTTGAGCAGCAGCTCGACCGCCC GCATCCCTATCTCGGGAACCCGACGCGCGAGTTCAAAGCTGCTTGGCTTT CCTTCGCTGTGTCGGCAGGGCATGCTCGAGCTCGGAAGCGCCATCGGCGA CGTTCGCCAAGAGAGATGGCGATTAAGGTATGGTGTGCTTCCGAGTGGGA GAGTAGATAACCTCGTATTACATTTATAGTTTGGCGATATAATAGTGCGA ATTTCGTGAATTCGAAGGTTGACAGAATAATTTCTTCTATTTTGGTTTCC GTGGCCGAAAGCATCCGAACGTGAGTAGGTAAAATTTAAACATTGGTCGA CGAGTTGTAAGATTGCTGAACTTGCATTGTGATTAAAAAAAATCGTTGGC GAGAAGCGGGTAGAGATGGCAAGATAGATAGATCCTTAAGTGACCTCAGG CAAGATGGCAATTTTGCAGTACGTGGGACTGGTAACCCAGTACGTTGAGG ACCATCGACTGTGTAGGTGAGATACAGCAAGTCGTGTACAACGCTGTGCT TGCCACCGTTGGGCAGTTTCTTGTCCCGCGTCGGAGTAGGATCACGCGTG GATAATGTACGAGCGCGAACGCTCGTGAGCGTTGCGCAGCACGCCTTTGT GGAGAACTCCCCCCCCCCCCCCACACCCCCCGATGCGATATTTTTGGCAG AGTTTTCGAGGATGCTTCATTCACGCTTCTACTTGTCACGCCGGTCACGA GCCCATTGATGCCGTGCTCCCAACCTCCCCCCCCTCCATATCCGATCTAA CCGTGCGGGTTGTTTTATTGTTGGCCTGTTTCTTCCTTTTTTCGCTCCAG ATGTGAAACGGTCATCAGCAGTCTTCCCCGGATGAAGTATGCCGCCGGTA GAATTGCCGGCGATGACGTCAAGTGAGCGCTCTATGCCTTTTAAGGTCGA GTGTACTTGTATTGGCTCTACCGAATAGACATCGTTATAGATTTTCTTTT CGGCTCACCGATTTTGGAACACGCCTTCTTCGGGTTTCTTAGAGAGTTCA AAGGCGAGGACCAACATGGTAGCAGGACCTGTTAAGCGCGGCTTACCCGT GAGGTTACTATCCTGGAAAGAGTAAAATGAGCCTTGAGTCGTCCCAGACG GACCTGATCTCGCGGCTCAACAGCGTGCCCTAAAGGTGATCCTGGGATCG GGAGCTTGAAGTCCATTCCCTGCTCGGAAGAGAAGGCCGCCGTGTTACAT GGGACTAAACGCTGCAGCTGCACATTGCGTGCACCGTTTTCACCCAGGTG CCTGGTGTGCCAGTGCGACTTTGAGGGGGGCGAGGAGCTGCGGGAGTTAC CGTGCAAACACGCCTTCCACACCGGTGAACACCAGACCAACCCGTTGCCA GCTGAATAGTCAAGCGCTCGTTCTGACTCGCTCGCCCCCTCATCCCGAAC CCTAAACGCCTCTCCAGACTCGATAGTACTGTATTAAAAAGGCAACTACG ACGTGACAACTAGGCTACTGTACCAGTAGATATGTTTAACCGTTATTGTC GTGTATCGCCGTACGATACGAGTACATGATTTCGTAGCTTTCGGAGGGAG AGTGGCAAGTGTCGAGAAATTTATTGATAGGGGGATCAAATTTGTCGGCC TTTTGTCATTTGTAACCCCCGCCCTCATCCAAAAAAACTATATAAACATA TCAAAATCCGACTAGGCTAAACATAATTTTGCTCCTCTCTTAAGACATAC CTGGTACGAAGTAATAGTTTCCCGTCTCGCGCCTGTTGTCCTTGTACCCC CCCCCCCCTCCGCGCCATCTTGGGTTGATTCCTACCTCGTCGCTAGACTG CGTGGACGGGTGGCTGGCACAGAACGAGGAATGTCCAACCTGCCGACGAT CTATCTCGGAAACCTGATGACGAGAAGTCAGGATTGAGCCGCTACGCTTC TCTTTTACCCGTCGATTCCTAAAATGTACTTGGAATGTGTAGCCCTATTT ATGGGCGACGAAAACTTAAGACGACGCGGGAGGGCTGCGCGTTGTTGGCC GAGACTATTGAGTGTTGCTGCTGCTGTTGAAGGGAGCGGGGGGGAGGGGA GGACAGATCTTTATCCTTCCGCCCTGCTGATTTTGCTCGCCTGGTAACGT GCGCGTGTCCCGCAAAACAAAGGAATGGTCCTCTTATCTCGTACTCCTGT ATAGACTACATACAGAATAGCGCGCTCACGCACACACAAACATCATACCT GGTATATATTTTTTGCTCGAGGATACAAAATTATGTCACTATGAAATATA TGCCCGTAATAGTGCTGCGCTGTATGCCGAGGGGGACGGGGGGGGGAGAA AATACTATCAGCA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1:412715..421727-

>mRNA_F-serratus_M_contig1.16.1 ID=mRNA_F-serratus_M_contig1.16.1|Name=mRNA_F-serratus_M_contig1.16.1|organism=Fucus serratus male|type=CDS|length=1788bp|location=Sequence derived from alignment at F-serratus_M_contig1:412715..421727- (Fucus serratus male)
ATGGAGACTCCGGGGCGAACGAACCATCATACTGCGTTGGTGGAGTCGCA
AAATATCCTCCAGGATGAGCCGATGGAGACTCCGGGGCGAACGAACCATC
ATACTGCGTTGGTGGAGTCGCAAAATATCCTCCAGGATGAGCCGGTCGGC
GCAAATCCATCACAGCACTCTTCCTATACCAAGAGCAGCAGCATGGACTC
GAAGATCTCTTCCGGTGTCTCTTGTGCTTCAGCCGCCGCTGCGGCGGCTA
CTGCTGATGTTGTCGCGGTCGAAGGTCGGCGCAAATCCATCACAGCACTC
TTCCTATACCAAGAGCAGCAGCATGGACTCGAAGATCTCTTCCGGTGTCT
CTTGTGCTTCAGCCGCCGCTGCGGCGGCTACTGCTGATGTTGTCGCGGTC
GAAGCGGCAAAGCCAGCGACGGGAGTCGAGGAGAGTCAGTCCACGGCTCG
CGCAGGGGCAGGGACAAGGGCAGCAGCGCCTTCGGCTTCCGTCGCCGCTG
CAGAAGAAAGCGGGCGCGGAAGCCCCGAGCGTGCAGGCGATCCTGGTGCG
GGCGAGGTGGCGGGGGAGGACGCGGAGGCCGCCTCCTTGGCGCTGGCCAG
ACAGCTACTCGAAGAGGAGCGGCAAAGCCAGCGACGGGAGTCGAGGAGAG
TCAGTCCACGGCTCGCGCAGGGGCAGGGACAAGGGCAGCAGCGCCTTCGG
CTTCCGTCGCCGCTGCAGAAGAAAGCGGGCGCGGAAGCCCCGAGCGTGCA
GGCGATCCTGGTGCGGGCGAGGTGGCGGGGGAGGACGCGGAGGCCGCCTC
CTTGGCGCTGGCCAGACAGCTACTCGAAGAGGAGGCGATGGCCTCTTACG
CCGCGGCGGTGGACATGTTCCGCAATGGAGGGAATGGGAGAGGCGCTGGT
GAAGGCGAGGGCATGGCCGCATTGGAGGGAATAGCCTCCGAGGATATGGC
GGCGATGCAGGCCTTGCTGCAGGAGGACGAGAATGCCTCGAACGCGGTCG
CGATGGCGGAAGACGAGTCGCTAGACTACGACGCGATGGCCTCTTACGCC
GCGGCGGTGGACATGTTCCGCAATGGAGGGAATGGGAGAGGCGCTGGTGA
AGGCGAGGGCATGGCCGCATTGGAGGGAATAGCCTCCGAGGATATGGCGG
CGATGCAGGCCTTGCTGCAGGAGGACGAGAATGCCTCGAACGCGGTCGCG
ATGGCGGAAGACGAGTCGCTAGACTACGACGGCATGCTCGAGCTCGGAAG
CGCCATCGGCGACGTTCGCCAAGAGAGATGGCGATTAAGGGCATGCTCGA
GCTCGGAAGCGCCATCGGCGACGTTCGCCAAGAGAGATGGCGATTAAGAT
GTGAAACGGTCATCAGCAGTCTTCCCCGGATGAAGTATGCCGCCGGTAGA
ATTGCCGGCGATGACGTCAAATGTGAAACGGTCATCAGCAGTCTTCCCCG
GATGAAGTATGCCGCCGGTAGAATTGCCGGCGATGACGTCAAGTGCCTGG
TGTGCCAGTGCGACTTTGAGGGGGGCGAGGAGCTGCGGGAGTTACCGTGC
AAACACGCCTTCCACACCGGTGCCTGGTGTGCCAGTGCGACTTTGAGGGG
GGCGAGGAGCTGCGGGAGTTACCGTGCAAACACGCCTTCCACACCGACTG
CGTGGACGGGTGGCTGGCACAGAACGAGGAATGTCCAACCTGCCGACGAT
CTATCTCGGAAACCTGAACTGCGTGGACGGGTGGCTGGCACAGAACGAGG
AATGTCCAACCTGCCGACGATCTATCTCGGAAACCTGA
back to top