mRNA_F-serratus_M_contig1294.2166.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1294.2166.1 vs. uniprot
Match: A0A6H5JMA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA0_9PHAE) HSP 1 Score: 325 bits (834), Expect = 6.390e-86 Identity = 236/591 (39.93%), Postives = 322/591 (54.48%), Query Frame = 2
Query: 3485 LSGFYSPPSRCLGKRRTVGERLAEAFRCRYLRDTCLRDWRCRLASLSA-QRRSARDHATRELCFTKRFSLVKWRRAHAALLARKTAAK--ASRL-RQDAL----PCLVTPATSTSNF------------LAVVIVTLRRWHHRSATSLLVQRFFGAWAARVRRSCAVDEHHRRFIARRGVSVWRRSTRAMSRTKLRFKSIEVWLLQWATRRSLHAWQERRRRQVASLRLAQKYVTSLTTISGRRMWRRG---GNMMRVYGTFRSWMARVHENVVSRSARRAAIERSDFRLRACVMTIWCARVLQTRRQQSFLSTARAHDARRLVTRVLKTLQNRNLDAQASKDAIMTGKVHWRRRTGKHCVELLSNWLRSRRRVFHRLDAIRSKISLLAGLHCWQRAARSSKIRQTAYTTADMHLRIKRLNTALCALTKAALRTVTSSGVMCHSRQHHTRRWNVATVKTWRAWNLRRGASSELFKAAQALWRAWMLSAGLRALDRVARARKHRREAGDVAELYVLRTCGLDRWRIATAARAHARSRRTTATVHWATALTAKVWRSWEAAAIQYWAESKQEEAAVWHGRQLCKERALKAWIT 5188
+S P R G+R + ERL+EAF +L T LR WR R A+ SA +RR A A+ L F+KR +L WR AHA LL+R TAA A+RL RQ +L C + TS +A+ IV +RRWH RS SLL++R F AW AR R S V H RR + RRG++ W R+ R R + ++ ++ + R L AW ERRRR++ + R A+ + G WRR +R+ + SW +SRSARRA +E + RLR+ + W V ++ L+ A ARRL + L+ ++ LDA+A +DA+ G HWRRR V L N SRRR+ R A+ +++ AGL W+++AR ++ + A + R K + L+ R + S H +RR V WR W RR A+++L++ A AL R+W+LSAGLRALDRVARAR RREA VAE ++LR GL RWR A A+R ARSR ATVHWA L++KV SWEAA++Q WAE++QEEAA H R K RAL+AW+T
Sbjct: 2080 VSSSACPDLRRPGRRGRLEERLSEAFLWHHLLHTGLRIWRTRAAATSAFRRRCAPSLASAALVFSKRTALAAWRAAHARLLSRNTAAXXTAARLARQSSLLLRRECRLRRVTSGGXXXXXXXAGPGKPSVALAIVAVRRWHRRSDASLLLRRTFWAWRARARDSREVGRHRRRALERRGLAAWCRAAREAGRARGCATAVAFFMSRAVAGRRLRAWVERRRRRLEATRAAEDHRARAAVNPGAARWRRQRRRDQQLRMEAAWSSWRETTRGRKMSRSARRAVVEAVESRLRSSAIGAWRDFVDGRLARRGLLAEAAQSRARRLKRKGLRGVKGGALDARAPRDAVWVGDEHWRRRRAAIVVARLRNLAESRRRMVRRAAALCLRVAARAGLTRWRQSARDWRVAREACVKGEAWRRDKARRDGVSVLSGRLGRRAKHDRAIRVSTLHLSRRLAGRAVAVWRGWTRRRAAAADLYEGASALHRSWILSAGLRALDRVARARTSRREAIVVAERHLLRFYGLGRWRAAAASRRRARSRAEIATVHWARTLSSKVLISWEAASLQQWAETRQEEAAARHERLASKRRALRAWMT 2670
BLAST of mRNA_F-serratus_M_contig1294.2166.1 vs. uniprot
Match: D7G051_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G051_ECTSI) HSP 1 Score: 228 bits (582), Expect = 9.600e-62 Identity = 160/418 (38.28%), Postives = 221/418 (52.87%), Query Frame = 2
Query: 3986 RAMSRTKLRFKSIEVWLLQWATRRSLHAWQERRRRQVASLRLAQKYVTSLTTISGRRMWRRG---GNMMRVYGTFRSWMARVHENVVSRSARRAAIERSDFRLRACVMTIWCARVLQTRRQQSFLSTARAHDARRLVTRVLKTLQNRNLDAQASKDAIMTGKVHWRRRTGKHCVELLSNWLRSRRRVFHRLDAIRSKISLLAGLHCWQRAARSSKIRQTAYTTADMHLRIKRLNTALCALTKAALRTVTSSGVMCHSRQHHTRRWNVATVKTWRAWNLRRGASSELFKAAQALWRAWMLSAGLRALDRVARARKHRREAGDVAELYVLRTCGLDRWRIATAARAHARSRRTTATVHWATALTAKVWRSWEAAAIQYWAESKQEEAAVWHGRQLCKERALKAWITFTVWSRGKSKPTIL 5230
R R + R ++ +L + R L AW ERRRR++ + R A+ + G WRR +R+ + SW A SRSARRA +E + RLR+ + W R++ L+ A ARRL + L+ L+ LDA+A +DA+ G HWRRR V L N SRRR+ R A+ +++ AGL W+++AR S++ + A + R K + L+ V WR W RR A+++L++ A AL R+W+LSAG+RALDRVARAR RREA VAE ++LR GL RWR A A+R ARSR ATVHWA L++KV SWEAAA+Q WAE++QEEAA H R K RAL+AW+ +R +S+P L
Sbjct: 3 RDTGRARGRAAAVAFFLSRAVAGRWLRAWVERRRRRLEATRAAEDHRARAAVSPGAARWRRQRRRDQQLRMEAAWSSWRATTRGRRTSRSARRAVVEAVESRLRSGAIGAWRGFADGRLRRRGLLAEAAQSRARRLKGKGLRGLKGGALDARAPRDAVWVGDEHWRRRGAAIVVARLRNLTESRRRMVRRAAALCLRVAARAGLTRWRQSARDSRVAREACVKGEAWRREKARRDGVSMLSGRLGGRAEQKXXXXXXXXXXXXXXXXXAVAAWRGWTRRRAAAADLYEGASALHRSWVLSAGMRALDRVARARTSRREAIVVAERHLLRFYGLGRWRAAAASRRRARSRAEIATVHWARTLSSKVLISWEAAALQQWAETRQEEAAARHERLAGKRRALRAWM-----ARVRSRPRCL 415
BLAST of mRNA_F-serratus_M_contig1294.2166.1 vs. uniprot
Match: D7G050_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G050_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 2.730e-16 Identity = 89/262 (33.97%), Postives = 121/262 (46.18%), Query Frame = 2
Query: 683 LVLARIDHGDRAWRIRRQRIVLKEFRARHLAAFRWHELDAKALQQFTRARIRRGLRTLKKCVTRKRARLEASAAEVTVVGAAASVAHALLRRRWMRAVMTMLRRNRQARMSLQSRDDLADLHFAHHRVPWTIQIWTKRAQNERYFQRNIRLATKSWESSSRRTALLRWIIHSLGDEQRRRRLSAWRKA--------LSYSRTSLSNNFTLGEGDNR-----SIKPEVQRLPEA--GDFELLFSSSALSSPAPRPTLSSPLPL 1423
+VL RI+ G R W R +R L RA A A A+ RGLR L V RKR VA R + M+ V+TML+RN QARM+L+SRDDLADLHFA RVP+ +Q W +RA+ R + + +AT W S + AL RW HSLGD+++R L+ SR S S++ + G + S++ E+ EA D + S + PR + P PL
Sbjct: 324 IVLWRIERGSRLWSERARRAGLAALRAHRTRAGLRDARHATAVSHCDIVLQVRGLRGLGARVRRKRDXXXXXXXXXXXXXX--RVADTYARAQQMQRVVTMLKRNWQARMALRSRDDLADLHFAEWRVPYAVQEWRQRARASRLCRDSQNIATSKWRSRALPAALARWAGHSLGDKEKRXXXXXXXXXXXXXXXXXLATSRVSGSHDGSRAGGTGKQQGEASVRRELPETEEAEPDDDDASEGSGLAPTVLPREPAAGPGPL 583 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1294.2166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1294.2166.1 >prot_F-serratus_M_contig1294.2166.1 ID=prot_F-serratus_M_contig1294.2166.1|Name=mRNA_F-serratus_M_contig1294.2166.1|organism=Fucus serratus male|type=polypeptide|length=1721bp MAQGKSTPGCPPSCSCLMRTCQRITKNRHGPSPSDNGKSQQLQRGNARRWback to top mRNA from alignment at F-serratus_M_contig1294:190263..199832+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1294.2166.1 ID=mRNA_F-serratus_M_contig1294.2166.1|Name=mRNA_F-serratus_M_contig1294.2166.1|organism=Fucus serratus male|type=mRNA|length=9570bp|location=Sequence derived from alignment at F-serratus_M_contig1294:190263..199832+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1294:190263..199832+ >mRNA_F-serratus_M_contig1294.2166.1 ID=mRNA_F-serratus_M_contig1294.2166.1|Name=mRNA_F-serratus_M_contig1294.2166.1|organism=Fucus serratus male|type=CDS|length=10326bp|location=Sequence derived from alignment at F-serratus_M_contig1294:190263..199832+ (Fucus serratus male)back to top |