mRNA_F-serratus_M_contig1288.2130.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1288.2130.1
Unique NamemRNA_F-serratus_M_contig1288.2130.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1288.2130.1 vs. uniprot
Match: A0A6H5JNQ0_9PHAE (KIX_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNQ0_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 9.730e-51
Identity = 102/127 (80.31%), Postives = 111/127 (87.40%), Query Frame = 3 
Query:  579 MGHGSGSAQSQIDA---EDRAKQERSLRAEELRNIYQEDIHYFVQHGSSLLKKLHKTRPASQISEQVLKVEQYVKEGRNALLYINRCHDTDHVPSAKSLRSLEHTLIRVHNASNALQVMIRDHSRTQ 950
            +G GSG++  Q +A   E+RAKQ RS RAEELR IYQEDIHYFVQHGSSLLKKLHKTRPASQ SEQVLK+ QYVKEG NALLYINRCH+T HVPSA SL+SLEHTLIRVH ASNALQVMIRDHS+TQ
Sbjct:  298 VGGGSGTSTGQHEAALKEERAKQHRSRRAEELRTIYQEDIHYFVQHGSSLLKKLHKTRPASQNSEQVLKLVQYVKEGHNALLYINRCHETGHVPSAASLQSLEHTLIRVHKASNALQVMIRDHSKTQ 424
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BLAST of mRNA_F-serratus_M_contig1288.2130.1 vs. uniprot
Match: A0A835Z449_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z449_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.640e-14
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 3 
Query:  654 AEELRNIYQEDIHYFVQHGSSLLKKLHKTRPASQIS------EQVLKVEQYVKEGRNALLYINRCHDTDHVPSAKSLRSLEHTLIRVHNASNALQVMI 929
            AE+LR  Y+ DI  FVQ G S+L K H   P S  +      +Q+ K+ QYV+EG+NAL+Y+ RCH   HVPSA SL+SLE TL +VH AS  L+ M+
Sbjct:  447 AEQLRRRYEADIRAFVQQGRSVLLK-HDGSPRSMAAHGSGGADQIRKLRQYVREGQNALVYMERCHSRGHVPSAVSLQSLEQTLAKVHCASRTLRQMM 543
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BLAST of mRNA_F-serratus_M_contig1288.2130.1 vs. uniprot
Match: A0A836CHY1_9STRA (KIX_2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 7.080e-6
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 3 
Query:  765 QVLKVEQYVKEGRNALLYINRCHDTDHVPSAKSLRSLEHTLIRVHNASNALQVM 926
            +V K+ QY++EG+NAL+Y+ RCH   H+PS  SL SL  TL +VH AS AL+ M
Sbjct:   70 RVRKLVQYIREGQNALMYMERCHLQHHIPSGPSLESLHLTLQKVHKASLALRSM 123
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1288.2130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JNQ0_9PHAE9.730e-5180.31KIX_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835Z449_9STRA2.640e-1450.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHY1_9STRA7.080e-653.70KIX_2 domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1288contigF-serratus_M_contig1288:107223..110512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size451
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1288.2130.1prot_F-serratus_M_contig1288.2130.1Fucus serratus malepolypeptideF-serratus_M_contig1288 107801..110512 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929229.3037395-UTR-F-serratus_M_contig1288:107222..1072531622929229.3037395-UTR-F-serratus_M_contig1288:107222..107253Fucus serratus maleUTRF-serratus_M_contig1288 107223..107253 +
1690962759.8026211-UTR-F-serratus_M_contig1288:107222..1072531690962759.8026211-UTR-F-serratus_M_contig1288:107222..107253Fucus serratus maleUTRF-serratus_M_contig1288 107223..107253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929229.321321-CDS-F-serratus_M_contig1288:107800..1078681622929229.321321-CDS-F-serratus_M_contig1288:107800..107868Fucus serratus maleCDSF-serratus_M_contig1288 107801..107868 +
1690962759.8113096-CDS-F-serratus_M_contig1288:107800..1078681690962759.8113096-CDS-F-serratus_M_contig1288:107800..107868Fucus serratus maleCDSF-serratus_M_contig1288 107801..107868 +
1622929229.3381484-CDS-F-serratus_M_contig1288:108794..1089151622929229.3381484-CDS-F-serratus_M_contig1288:108794..108915Fucus serratus maleCDSF-serratus_M_contig1288 108795..108915 +
1690962759.8195894-CDS-F-serratus_M_contig1288:108794..1089151690962759.8195894-CDS-F-serratus_M_contig1288:108794..108915Fucus serratus maleCDSF-serratus_M_contig1288 108795..108915 +
1622929229.3550017-CDS-F-serratus_M_contig1288:109120..1092731622929229.3550017-CDS-F-serratus_M_contig1288:109120..109273Fucus serratus maleCDSF-serratus_M_contig1288 109121..109273 +
1690962759.8282928-CDS-F-serratus_M_contig1288:109120..1092731690962759.8282928-CDS-F-serratus_M_contig1288:109120..109273Fucus serratus maleCDSF-serratus_M_contig1288 109121..109273 +
1622929229.3700624-CDS-F-serratus_M_contig1288:110434..1105121622929229.3700624-CDS-F-serratus_M_contig1288:110434..110512Fucus serratus maleCDSF-serratus_M_contig1288 110435..110512 +
1690962759.835866-CDS-F-serratus_M_contig1288:110434..1105121690962759.835866-CDS-F-serratus_M_contig1288:110434..110512Fucus serratus maleCDSF-serratus_M_contig1288 110435..110512 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1288.2130.1

>prot_F-serratus_M_contig1288.2130.1 ID=prot_F-serratus_M_contig1288.2130.1|Name=mRNA_F-serratus_M_contig1288.2130.1|organism=Fucus serratus male|type=polypeptide|length=140bp
MGHGSGSAQSQIDAEDRAKQERSLRAEELRNIYQEDIHYFVQHGSSLLKK
LHKTRPASQISEQVLKVEQYVKEGRNALLYINRCHDTDHVPSAKSLRSLE
HTLIRVHNASNALQVMIRDHSRTQQNNNPYGPGGGGGGSG
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mRNA from alignment at F-serratus_M_contig1288:107223..110512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1288.2130.1 ID=mRNA_F-serratus_M_contig1288.2130.1|Name=mRNA_F-serratus_M_contig1288.2130.1|organism=Fucus serratus male|type=mRNA|length=3290bp|location=Sequence derived from alignment at F-serratus_M_contig1288:107223..110512+ (Fucus serratus male)
ACAACAGCAGCACGAACAACAGCAGCAACAGGTGCTTTTGCACTGCCAAC
GGGTATAGGCAGAGAAGCGCGCCCCCCCCCCCTGTGAAATCCCCTCTCCC
CCCCCCCCCCCCCCCCCCCCCACCCTCGAGTCTTTCTTCGTGGCTGACGT
GACACATCAGTAGGTTTTGAAACTTGAAGAAAAAATATATCTGCCTTACT
CTTTCGCGGTTGTTTGTGTGCATTTGTGTTGTTGGTGTGTTGTTGTTTCT
TTAGGAGGGGTGAGGGGATTGGTTAAGTACACTCCGCTCTCCTTTTTACA
CATATGTGGATAGTTTTGGTTCGACGCTCTATATCGAGATATGCCACCCA
GGCGAGGAAAGGCCTCAAAAGGTTCGGAACTGCGTTTGTCCGTGGCCACA
AACCGTTTCCATTGTTCGTTTTTCGAGGTAGAGATGCCGTCGGGTCGGTA
ATTTACCGTCGGTACTACTGTTGTCCCCTTCCTGTGTTGAATTTTCCAAA
CCATGGAAGAGAATATTCGATTCCTTCAGCTCTTTTCCGCCTCAATTGGA
CGTACCCTGGTACTATTTGTTGATGCAGATGGGACACGGGTCAGGCAGTG
CGCAGAGCCAGATCGATGCGGAAGACCGGGCAAAACAGGAGCGCAGGTTA
GCGTGTATGTGTGTTTGTTCAGATAAAAATGAACGCATGTAAACCTTCTC
TTGAGCGTTTACCCAATTAGGGGGGGGGGATGTCAAAACGTTAAGGCAGG
AAGATAGGCTATCAGGAGAAAAACTCTTCGTGGGGTATAATTGGGTTATA
TTCCTCGATGGTAGTAGCATGGGATCAACAGTATAATATAGCGGAGAAAC
TTGCCGTTAAACTGTACACTAACATAATCGCCGTGCAGGTACACCAAAAT
AGAGGCAATTATTTATTGAATTGTAAGTTGTGTTTGTGAGTTTGTGTATT
TATTGCGAGCGTTTAGCGAGCTTCTAATCTGTGTGCTGTATCAATTTGAG
CTCGGGTGTATCAAAATACGGGGCACTTTGACCAATCATGAATGTGCCGT
ATGTTCCTTTTCGTGATGTGCGCCCCCTGTTTGGTTAAACCAACACCTGT
GTTCAGGGTAGGAACGTGGAACTTCGAATTACTTGCCCTGTTTGATTAAA
AACCAACACCTGTGTACAGCTGACGATAGTTACCAAACTATCCTTTAGCG
AGCGTATAGCGATAGCTACCCTATCTTTACATTGCACATTGCGTGTGTGT
ATGTGATTTTGGTCAAATGCACACAAACGCGAAATTTGAATGTTACCCTT
ATCAGTCTAACCTATAATAGTCGCATCCCCCCAATGGGAGGGTTAAATCT
CGGAGTGCTTTGGTGGCCCATCTGCCGTGCGGGGCAAAGTTTATTGTTAT
ACACACGATTTGTTCCCTGCATTTCGCTTCTGCTAGAATACGCCCTGAAA
AACACCAAGTCGTGATGAAGCAAGTCTTTTGAGAAAAGGAAATCGTTCAT
GCAAACGCTAAGAGTATGGTTTTGAACGTCCTCTTGTGTGTCGTGTCTTG
GGCGGGGGTTGGACTCACATAGTCTCCGAGCCGAGGAGCTGCGCAACATC
TACCAGGAGGATATCCACTATTTCGTACAACACGGATCAAGCCTTCTCAA
GAAACTGCACAAGACCAGACCAGCCTCCCAAATCTCGGAGCAGGTGAGTG
GGCAAGCCCGCACTAAGCGAGTGCGGAGGATGGTGTCTCGTTCGGATACT
GTACCTGGATAGCAGTCGTTCGCGACAACAAGGCTTTCGAGGTGTTTTAT
GTTTCGTTTGCTGCAACTCCCCCCCCCCCCCCATCCTTTCTTCTCGACAT
TTTCTTCCTTTTTTCCTCGTTTGATTTTTGGTTGTATTTTTCCACCAGGT
ACTGAAAGTGGAGCAATACGTGAAGGAGGGCCGTAACGCCCTACTGTACA
TCAACCGCTGCCACGACACAGATCACGTGCCCTCGGCTAAAAGCCTTCGC
TCCCTCGAACACACCCTCATTCGGGTCCACAATGCCAGCAACGCCCTGCA
GGTGATTTAATCTAACCGTGCTATCTGGGCACTGACTATGAAGAGAGATA
CGTTTGTGAAATACGCCTCATGTCTCTATAGCTCTATGCGTTTTGCGACA
GTTTTTGTTGCGTGTGCGTGTCTGTTTTGTTATCACAGTATGTGTGAAAT
GCGTCTATCTGGCAGTGTTTTTTTGCTCTGGCAGTGTCTGGCTGTGTTTC
TGTGCGTTGGTATATCTAGTGAACTACAGTGCATACACCGGCGCAGTCCG
CTGCTGTTACACTACGCTGGCATCATTTTTTTAGCTACTCCCATCTCCCA
GTGGGGGATCAGTGTGTGTGTATATGTGTGCCCTGTTTGTGTTAAGTGTT
TGTATTTATTCAGATGCTTATAACCGCGCAATCCGGCTATGTTATCCTAT
TAATAGTAGTTACACTATACTATAAAGCCGGTCGCCCCGATAGCTCAGAG
ATAACCTCGTGACCTTCTGAAATGTCGGGACGTGAGTTTGAATCCCGGTT
AACGGGGTTTTTTCTCGCTAAAAAAAATGAAAATAAAAATGAAAATGCCC
AACAAGCGGAAAACGATTACATCGTTAGCACACAAAATTCGACTTCACGG
TCGACGAGGGAAAGGAACGGCTGAATCCTTCGCTCGAGAAAAATTAAGGC
ACGCGCCGCAGAAGGAAGGTGGATGATAAATTATTTTTGACCCCGGCTGG
TACGTCCAGCGAACTTGATGTCCAGAATAAATGAGAAGAAAACACACAAC
AAACACACATACTATACTATACTTGCGTTGACTCTATCAAGGGAGATCAA
TTCTATTCTTGTGGAAGTGTTACGTTGCTGTTTTGAGTTTGGTGTTTTCG
TGTGATTAAAGTGTTTTTTATTTCGTGTACATTCTTTTTGTCTACTCTTG
TGTCTGTAGCATCTAGCTCGTGTTTCATAACAATACACATTATGGCCTTA
TACCCACACACAACGACCCCGCAATGAGAGTCCTGTCGTTCTACTGCTGT
CATTCTACTCTTCGAAATCCCCCCCCCCCCTCCCAACGGAAAAATACCTG
TAAGTGAACGCCTGTCTTCATTATACCCTATTAAGGTCTACCCTCGTATC
GCCTATTGCTATTCAGTCGTTTATTTTATTTTTTATATACACATAAAATC
TACGTTTTGCAGGTCATGATTCGAGACCACTCGAGGACCCAGCAGAATAA
CAACCCCTACGGCCCAGGAGGTGGCGGCGGTGGTTCAGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1288:107223..110512+

>mRNA_F-serratus_M_contig1288.2130.1 ID=mRNA_F-serratus_M_contig1288.2130.1|Name=mRNA_F-serratus_M_contig1288.2130.1|organism=Fucus serratus male|type=CDS|length=840bp|location=Sequence derived from alignment at F-serratus_M_contig1288:107223..110512+ (Fucus serratus male)
ATGGGACACGGGTCAGGCAGTGCGCAGAGCCAGATCGATGCGGAAGACCG
GGCAAAACAGGAGCGCAGATGGGACACGGGTCAGGCAGTGCGCAGAGCCA
GATCGATGCGGAAGACCGGGCAAAACAGGAGCGCAGTCTCCGAGCCGAGG
AGCTGCGCAACATCTACCAGGAGGATATCCACTATTTCGTACAACACGGA
TCAAGCCTTCTCAAGAAACTGCACAAGACCAGACCAGCCTCCCAAATCTC
GGAGCAGTCTCCGAGCCGAGGAGCTGCGCAACATCTACCAGGAGGATATC
CACTATTTCGTACAACACGGATCAAGCCTTCTCAAGAAACTGCACAAGAC
CAGACCAGCCTCCCAAATCTCGGAGCAGGTACTGAAAGTGGAGCAATACG
TGAAGGAGGGCCGTAACGCCCTACTGTACATCAACCGCTGCCACGACACA
GATCACGTGCCCTCGGCTAAAAGCCTTCGCTCCCTCGAACACACCCTCAT
TCGGGTCCACAATGCCAGCAACGCCCTGCAGGTACTGAAAGTGGAGCAAT
ACGTGAAGGAGGGCCGTAACGCCCTACTGTACATCAACCGCTGCCACGAC
ACAGATCACGTGCCCTCGGCTAAAAGCCTTCGCTCCCTCGAACACACCCT
CATTCGGGTCCACAATGCCAGCAACGCCCTGCAGGTCATGATTCGAGACC
ACTCGAGGACCCAGCAGAATAACAACCCCTACGGCCCAGGAGGTGGCGGC
GGTGGTTCAGGCGTCATGATTCGAGACCACTCGAGGACCCAGCAGAATAA
CAACCCCTACGGCCCAGGAGGTGGCGGCGGTGGTTCAGGC
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