prot_F-serratus_M_contig1287.2123.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1287.2123.1
Unique Nameprot_F-serratus_M_contig1287.2123.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length88
Homology
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: A0A194RJV9_PAPMA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Papilio machaon TaxID=76193 RepID=A0A194RJV9_PAPMA)

HSP 1 Score: 61.6 bits (148), Expect = 4.180e-9
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 0
Query:    4 DAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIR-SKTDHPVTLHDVYYVPDLGFNLFS 81
            D W  DSGAT HMTR +D MYD + P  HR  I++ +     VQ +GK+++  + +K +H + + +V ++P L  NL S
Sbjct:  218 DDWYIDSGATMHMTRRSDWMYDEQSPPIHR--IMVANSEAIPVQSMGKVNIQTKLNKDEHQIQVRNVLFIPKLSTNLLS 294          
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: UPI001F12C045 (uncharacterized protein LOC124543428 n=1 Tax=Vanessa cardui TaxID=171605 RepID=UPI001F12C045)

HSP 1 Score: 59.7 bits (143), Expect = 1.940e-8
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 0
Query:    4 DAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIR-SKTDHPVTLHDVYYVPDLGFNLFS 81
            D W  DSGAT HMTR +D MYD + P  HR ++   +     VQ +GK+++  + +K +H + + +V ++P L  NL S
Sbjct:  121 DDWYIDSGATMHMTRRSDWMYDEQSPPVHRIKV--ANSEAIPVQSMGKVNIQTKLNKDEHRIQVRNVLFIPKLTTNLLS 197          
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: UPI001C35A33D (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C35A33D)

HSP 1 Score: 52.8 bits (125), Expect = 5.320e-6
Identity = 27/79 (34.18%), Postives = 45/79 (56.96%), Query Frame = 0
Query:    4 DAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIR-SKTDHPVTLHDVYYVPDLGFNLFS 81
            D W  DSGAT H+TR +D MYD  PP   +  I++ +     V  +GK+++     K +H + + +V ++P++  NL S
Sbjct:  243 DDWYIDSGATMHITRCSDWMYDLEPPPIQK--IMVANNEALSVHNMGKVNIQTNICKDEHLIQVRNVLFIPEVSANLLS 319          
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: A0A2K3MQW2_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MQW2_TRIPR)

HSP 1 Score: 51.2 bits (121), Expect = 1.910e-5
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 0
Query:    6 WISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIRSKTDHPVTLHDVYYVPDLGFNLFS 81
            WISD+GA+ HMT  A M+ + R  S   S +++GDGS   +  +G  D  I+ K +  + LHDV  VPDL  NL S
Sbjct:  339 WISDTGASNHMTGTASMLSNIRQSSGTDS-VLIGDGSPLPIHGIG--DSFIKQK-NITLPLHDVLLVPDLTKNLLS 410          
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: A0A2Z6LMX1_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LMX1_TRISU)

HSP 1 Score: 51.2 bits (121), Expect = 1.910e-5
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = 0
Query:    6 WISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIRSKTDHPVTLHDVYYVPDLGFNLFS 81
            WISD+GA+ HMT  A M+ + R  S   S +++GDGS   +  +G  D  I+ K +  + LHDV  VPDL  NL S
Sbjct:  339 WISDTGASNHMTGTASMLNNIRQSSGTDS-VLIGDGSPLPIHGIG--DSFIKQK-NITLPLHDVLLVPDLTKNLLS 410          
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: UPI001E662BBE (uncharacterized protein LOC123723402 n=1 Tax=Papilio machaon TaxID=76193 RepID=UPI001E662BBE)

HSP 1 Score: 48.5 bits (114), Expect = 8.170e-5
Identity = 25/62 (40.32%), Postives = 38/62 (61.29%), Query Frame = 0
Query:    4 DAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIR-SKTDHPV 64
            D W  DSGAT HMTR +D MYD + P  HR  I++ +     VQ +GK+++  + +K +H +
Sbjct:  103 DDWYIDSGATMHMTRRSDWMYDEQSPPIHR--IMVANSEAIPVQSMGKVNIQTKLNKDEHQI 162          
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: A0A2Z6NS08_TRISU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NS08_TRISU)

HSP 1 Score: 49.3 bits (116), Expect = 9.030e-5
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 0
Query:    6 WISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIRSKTDHPVTLHDVYYVPDLGFNLFS 81
            WISD+GA+ HMT    M+++ R  S   S +++GDGS   +  +G  D  I+ + +  + LHDV  VPDL  NL S
Sbjct:  339 WISDTGASNHMTGKTSMLHNIRQCSGTDS-VLIGDGSPLPIHGIG--DSFIK-QNNITLPLHDVLLVPDLTKNLLS 410          
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Match: A0A5J4Z9D8_PORPP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9D8_PORPP)

HSP 1 Score: 49.3 bits (116), Expect = 9.200e-5
Identity = 30/80 (37.50%), Postives = 41/80 (51.25%), Query Frame = 0
Query:    2 VNDAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVGKLDLVIRSKTDHPVTLHDVYYVPDLGFNLFS 81
             + AWI DSGA++HMT     +   RP S    ++ L DG       +G+      S T   VTL+DV YVP L ++L S
Sbjct:  299 TSQAWILDSGASSHMTGEVSRLRTRRPCS---DKVRLADGRTVSAVAIGQ------SHTAEGVTLNDVLYVPHLSYSLLS 369          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1287.2123.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A194RJV9_PAPMA4.180e-939.24Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F12C0451.940e-837.97uncharacterized protein LOC124543428 n=1 Tax=Vanes... [more]
UPI001C35A33D5.320e-634.18Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
A0A2K3MQW2_TRIPR1.910e-543.42Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2Z6LMX1_TRISU1.910e-543.42Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
UPI001E662BBE8.170e-540.32uncharacterized protein LOC123723402 n=1 Tax=Papil... [more]
A0A2Z6NS08_TRISU9.030e-540.79Integrase catalytic domain-containing protein (Fra... [more]
A0A5J4Z9D8_PORPP9.200e-537.50Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1287contigF-serratus_M_contig1287:79679..79942 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1287.2123.1mRNA_F-serratus_M_contig1287.2123.1Fucus serratus malemRNAF-serratus_M_contig1287 79679..79942 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1287.2123.1 ID=prot_F-serratus_M_contig1287.2123.1|Name=mRNA_F-serratus_M_contig1287.2123.1|organism=Fucus serratus male|type=polypeptide|length=88bp
EVNDAWISDSGATTHMTRHADMMYDSRPPSPHRSRIILGDGSIRKVQFVG
KLDLVIRSKTDHPVTLHDVYYVPDLGFNLFSFHVVQEK
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