mRNA_F-serratus_M_contig990.21211.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE) HSP 1 Score: 132 bits (331), Expect = 8.420e-31 Identity = 66/135 (48.89%), Postives = 90/135 (66.67%), Query Frame = 2 Query: 1589 SWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 +W +RRY RELFD+P+ LKIR+++AEA+EALLYGC W+ HY LR HHR+LLR++G +R++ + SY L C+S+E T+R RRLL+AG L R GRLP R+M L G +R RGG+E+ Sbjct: 102 AWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQ 236
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE) HSP 1 Score: 135 bits (339), Expect = 1.120e-29 Identity = 67/135 (49.63%), Postives = 92/135 (68.15%), Query Frame = 2 Query: 1589 SWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 +W +RRY RELFD+P+ LKIR+++AEA+EALLYGC W+ HY LR HHR+LLR++G +R++ + SY L+ CQS+E T+R RRLL+AG L R GRLP R+M+ L G +R RGG+E+ Sbjct: 126 AWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQ 260
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.030e-29 Identity = 63/135 (46.67%), Postives = 89/135 (65.93%), Query Frame = 2 Query: 1589 SWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 +W +RRY RELFD+P+ LKIR+++AEA+EALLYGC W+ HY LR HHR+LLR++G +R++ + + L+ CQS+ T+R RR+L+AG L R GRLP R+M L G +R RGG+E+ Sbjct: 102 AWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVVGYKRKKDTYRQLGHAQTLKRVECQSVAATIRQRRILFAGALTRQPDGRLPKRLMFGELAGGEKRRRGGQEQ 236
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE) HSP 1 Score: 127 bits (320), Expect = 3.190e-29 Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 A+W I+RY ELFD+P LK R+++AEA+EALLYGC W+ R+ HY L+ HHR+LLR++G +R+R + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G G+G E+ Sbjct: 80 AAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQ 215
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE) HSP 1 Score: 129 bits (323), Expect = 3.880e-29 Identity = 66/136 (48.53%), Postives = 89/136 (65.44%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 A+W IRRY ELFD+P LK R+++AEA+EALLYGC W+ R+ HY L+ HHR+LLR++G +R+R + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G G+G E+ Sbjct: 131 AAWACIRRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQ 266
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE) HSP 1 Score: 131 bits (329), Expect = 6.530e-29 Identity = 66/135 (48.89%), Postives = 91/135 (67.41%), Query Frame = 2 Query: 1589 SWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 +W +RRY RELFD+P+ LKIR+++AEA+EALLYGC W+ HY LR HHR+LLR++G +R++ + SY L+ CQS+E T+R RRLL AG L R S GRLP R+M+ L G +R + G+E+ Sbjct: 102 AWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLLAGALARQSDGRLPKRLMLGELAGGEQRRKWGQEQ 236
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE) HSP 1 Score: 135 bits (339), Expect = 7.580e-29 Identity = 75/166 (45.18%), Postives = 100/166 (60.24%), Query Frame = 2 Query: 1505 RSSHLRQLT*YGQL---YGNEVTSPN*LYSASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 R +H +L G L +G+ N A+W +RRY +ELFD+PR LK R+++AEA+EALLYGC W RQ+ Y LR HHR+LLR++G QR + + SY L+ CQS+E T+R RRLL+AG L R GRLP R+M+ L G GRG E+ Sbjct: 636 RYAHTTELRYLGGLVNEHGDLTREINYRNKAAWACVRRYGQELFDRPRAPFRLKTRLLQAEAMEALLYGCMTWAPRQDQYRTLRTIHHRLLLRVVGYQRMKCTYRQLSYAQTLKRVGCQSVESTIRQRRLLFAGALARQPDGRLPKRLMLGELVGGEGSGRGKPEQ 801
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 133 bits (335), Expect = 1.420e-28 Identity = 67/135 (49.63%), Postives = 91/135 (67.41%), Query Frame = 2 Query: 1589 SWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 +W +RRY RELFD+P+ LKIR+++AEA+EALLYGC W+ HY LR HHR+LLR++G +R++ + SY L+ CQS+E T+R RRLL+AG L R GRLP R+M L G +R RGG+E+ Sbjct: 454 AWACLRRYGRELFDRPQAPSRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQ 588
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE) HSP 1 Score: 132 bits (331), Expect = 1.500e-28 Identity = 66/135 (48.89%), Postives = 89/135 (65.93%), Query Frame = 2 Query: 1589 SWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 +W +RRY RELFD+P+ LKIR+++AEA+EALLYGC W+ HY LR HHR+L R++G + ++ + SY LE CQS+E T+R RRLL+AG L R GRLP R+M L G +R RGG+E+ Sbjct: 365 AWACLRRYGRELFDRPKAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQ 499
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.000e-28 Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 2 Query: 1586 ASWMRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLRIAHHRVLLRIMGAQRQRPDHGMTSYNCALEITRCQSIEITLRTRRLLWAGTLIRMSCGRLP*RVMISILEGEVRRGRGGKEK 1993 A+W I+RY ELFD+P LK R+++AEA+EALLYGC W+ R+ HY L+ HHR+LLR++G +R+R + SY AL+ CQS+E T+R RRLL+AG + R GRLP R+M L G G+G E+ Sbjct: 99 AAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQ 234 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig990.21211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig990.21211.1 >prot_F-serratus_M_contig990.21211.1 ID=prot_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=polypeptide|length=113bp MRIRRYQRELFDQPRVALSLKIRMVKAEAIEALLYGCSAWTIRQEHYTKLback to top mRNA from alignment at F-serratus_M_contig990:194761..197144+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig990.21211.1 ID=mRNA_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=mRNA|length=2384bp|location=Sequence derived from alignment at F-serratus_M_contig990:194761..197144+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig990:194761..197144+ >mRNA_F-serratus_M_contig990.21211.1 ID=mRNA_F-serratus_M_contig990.21211.1|Name=mRNA_F-serratus_M_contig990.21211.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig990:194761..197144+ (Fucus serratus male)back to top |