mRNA_F-serratus_M_contig128.2074.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig128.2074.1
Unique NamemRNA_F-serratus_M_contig128.2074.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig128.2074.1 vs. uniprot
Match: A0A6H5KSL7_9PHAE (NifU domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSL7_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 4.180e-14
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 PVITLKMTGSSASLRSVRMEIMQRIQREFMMSALRVEFAP 120
            PVITLKMTGSSASL+S+RMEIMQRIQREFMMS+LRVEFAP
Sbjct:  237 PVITLKMTGSSASLKSIRMEIMQRIQREFMMSSLRVEFAP 276
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BLAST of mRNA_F-serratus_M_contig128.2074.1 vs. uniprot
Match: A0A7S2E835_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E835_TRICV)

HSP 1 Score: 57.0 bits (136), Expect = 1.890e-8
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 PVITLKMTGSSASLRSVRMEIMQRIQREFMMSALRVEFA 117
            PVITLKM GSSASL SV++EI QR+QR FMMS LRVE+A
Sbjct:  226 PVITLKMEGSSASLNSVKLEIAQRMQRHFMMSGLRVEWA 264
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BLAST of mRNA_F-serratus_M_contig128.2074.1 vs. uniprot
Match: A0A7S1G1H4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1H4_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.210e-7
Identity = 28/39 (71.79%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 PVITLKMTGSSASLRSVRMEIMQRIQREFMMSALRVEFA 117
            PVITL+MTG+SASL SV++EI QRIQR FMMS LR+ +A
Sbjct:  197 PVITLEMTGASASLNSVKLEIEQRIQRHFMMSGLRITWA 235
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BLAST of mRNA_F-serratus_M_contig128.2074.1 vs. uniprot
Match: A0A6T8PGS6_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8PGS6_HEMAN)

HSP 1 Score: 54.3 bits (129), Expect = 1.770e-7
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 PVITLKMTGSSASLRSVRMEIMQRIQREFMMSALRVEF 114
            P ITLKMTGSSA+LRSV+ EIMQRIQR FM+  LR+++
Sbjct:  219 PTITLKMTGSSAALRSVKNEIMQRIQRNFMLPGLRIDW 256
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BLAST of mRNA_F-serratus_M_contig128.2074.1 vs. uniprot
Match: A0A835Z016_9STRA (NifU-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z016_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 1.980e-7
Identity = 26/39 (66.67%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 PVITLKMTGSSASLRSVRMEIMQRIQREFMMSALRVEFA 117
            P I LKMTG S+SL+SV+MEIMQR+QR FM+S LR+++A
Sbjct:  142 PHIALKMTGKSSSLQSVKMEIMQRLQRHFMLSGLRIDWA 180
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BLAST of mRNA_F-serratus_M_contig128.2074.1 vs. uniprot
Match: A0A7S0YNT8_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YNT8_9CRYP)

HSP 1 Score: 53.1 bits (126), Expect = 4.250e-7
Identity = 26/38 (68.42%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 PVITLKMTGSSASLRSVRMEIMQRIQREFMMSALRVEF 114
            P ITLKMTG+SA+LRSV+ EIMQRIQR FM+  LR+++
Sbjct:  201 PTITLKMTGTSAALRSVKNEIMQRIQRNFMLPGLRIDW 238
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BLAST of mRNA_F-serratus_M_contig128.2074.1 vs. uniprot
Match: A0A7S0HPD5_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HPD5_9CRYP)

HSP 1 Score: 52.8 bits (125), Expect = 5.990e-7
Identity = 25/39 (64.10%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 PVITLKMTGSSASLRSVRMEIMQRIQREFMMSALRVEFA 117
            PVI LKMTG+SA+LRSV+ EI+QR+QR FM++ LR+++A
Sbjct:  204 PVIVLKMTGTSAALRSVKNEIVQRLQRNFMLAGLRIDWA 242
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BLAST of mRNA_F-serratus_M_contig128.2074.1 vs. uniprot
Match: K0SKZ0_THAOC (NifU domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SKZ0_THAOC)

HSP 1 Score: 52.4 bits (124), Expect = 7.530e-7
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 PVITLKMTGSSASLRSVRMEIMQRIQREFMMSALRVEFA 117
            P ITLKM GS+ASL SV++EI QR+QR FM+S +RVE+A
Sbjct:  189 PTITLKMDGSAASLNSVKLEIAQRLQRHFMISGMRVEWA 227
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BLAST of mRNA_F-serratus_M_contig128.2074.1 vs. uniprot
Match: A0A7S1H4I0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H4I0_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 9.730e-7
Identity = 25/39 (64.10%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 PVITLKMTGSSASLRSVRMEIMQRIQREFMMSALRVEFA 117
            P ITLKM G+SASL+SV++EI QR+QR FM++ LRV++A
Sbjct:  144 PTITLKMEGASASLKSVKLEIAQRLQRHFMVAGLRVDWA 182
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BLAST of mRNA_F-serratus_M_contig128.2074.1 vs. uniprot
Match: B8BR62_THAPS (NifU like protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR62_THAPS)

HSP 1 Score: 52.0 bits (123), Expect = 1.110e-6
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 PVITLKMTGSSASLRSVRMEIMQRIQREFMMSALRVEFA 117
            P ITLKM GS+ASL SV++EI QR+QR FM+S +RVE+A
Sbjct:  199 PTITLKMGGSAASLNSVKLEIAQRLQRHFMISGMRVEWA 237
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig128.2074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KSL7_9PHAE4.180e-1492.50NifU domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2E835_TRICV1.890e-876.92Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1G1H4_9STRA1.210e-771.79Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6T8PGS6_HEMAN1.770e-771.05Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A835Z016_9STRA1.980e-766.67NifU-like domain-containing protein n=1 Tax=Tribon... [more]
A0A7S0YNT8_9CRYP4.250e-768.42Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0HPD5_9CRYP5.990e-764.10Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
K0SKZ0_THAOC7.530e-766.67NifU domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S1H4I0_9STRA9.730e-764.10Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
B8BR62_THAPS1.110e-666.67NifU like protein n=1 Tax=Thalassiosira pseudonana... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig128contigF-serratus_M_contig128:463403..463525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue3.7e-08
Seed eggNOG ortholog2880.D7FRC2
Preferred nameNFU3
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006790,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009987,GO:0015979,GO:0016020,GO:0016043,GO:0016226,GO:0019684,GO:0022607,GO:0031163,GO:0032947,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048564,GO:0050896,GO:0051186,GO:0065003,GO:0071840,GO:0071944
EggNOG free text desc.NFU1 iron-sulfur cluster scaffold
EggNOG OGsCOG0694@1,KOG2358@2759
EC6.1.1.6
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size123
Cds size105
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929218.2664459-UTR-F-serratus_M_contig128:463402..4634201622929218.2664459-UTR-F-serratus_M_contig128:463402..463420Fucus serratus maleUTRF-serratus_M_contig128 463403..463420 +
1690962754.9537919-UTR-F-serratus_M_contig128:463402..4634201690962754.9537919-UTR-F-serratus_M_contig128:463402..463420Fucus serratus maleUTRF-serratus_M_contig128 463403..463420 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929218.2842245-CDS-F-serratus_M_contig128:463420..4635251622929218.2842245-CDS-F-serratus_M_contig128:463420..463525Fucus serratus maleCDSF-serratus_M_contig128 463421..463525 +
1690962754.967375-CDS-F-serratus_M_contig128:463420..4635251690962754.967375-CDS-F-serratus_M_contig128:463420..463525Fucus serratus maleCDSF-serratus_M_contig128 463421..463525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig128.2074.1prot_F-serratus_M_contig128.2074.1Fucus serratus malepolypeptideF-serratus_M_contig128 463421..463525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig128.2074.1

>prot_F-serratus_M_contig128.2074.1 ID=prot_F-serratus_M_contig128.2074.1|Name=mRNA_F-serratus_M_contig128.2074.1|organism=Fucus serratus male|type=polypeptide|length=35bp
MTGSSASLRSVRMEIMQRIQREFMMSALRVEFAP*
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mRNA from alignment at F-serratus_M_contig128:463403..463525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig128.2074.1 ID=mRNA_F-serratus_M_contig128.2074.1|Name=mRNA_F-serratus_M_contig128.2074.1|organism=Fucus serratus male|type=mRNA|length=123bp|location=Sequence derived from alignment at F-serratus_M_contig128:463403..463525+ (Fucus serratus male)
CCCGTGATCACGCTCAAGATGACGGGGTCTAGCGCAAGCCTGCGGTCGGT
CAGGATGGAGATCATGCAGCGCATCCAGCGCGAGTTCATGATGTCCGCAC
TGCGCGTAGAATTCGCGCCATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig128:463403..463525+

>mRNA_F-serratus_M_contig128.2074.1 ID=mRNA_F-serratus_M_contig128.2074.1|Name=mRNA_F-serratus_M_contig128.2074.1|organism=Fucus serratus male|type=CDS|length=210bp|location=Sequence derived from alignment at F-serratus_M_contig128:463403..463525+ (Fucus serratus male)
ATGACGGGGTCTAGCGCAAGCCTGCGGTCGGTCAGGATGGAGATCATGCA
GCGCATCCAGCGCGAGTTCATGATGTCCGCACTGCGCGTAGAATTCGCGC
CATGAATGACGGGGTCTAGCGCAAGCCTGCGGTCGGTCAGGATGGAGATC
ATGCAGCGCATCCAGCGCGAGTTCATGATGTCCGCACTGCGCGTAGAATT
CGCGCCATGA
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