mRNA_F-serratus_M_contig927.20667.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig927.20667.1
Unique NamemRNA_F-serratus_M_contig927.20667.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig927.20667.1 vs. uniprot
Match: A0A6H5KQU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU2_9PHAE)

HSP 1 Score: 220 bits (560), Expect = 6.650e-65
Identity = 104/141 (73.76%), Postives = 120/141 (85.11%), Query Frame = 1 
Query:    7 KGVDDTGHRLLKAAREGDTVAMGEILARGDIEVDWVSRSNGWTAVMEAAEHGSLEGVCYLVDKGADLERSTNKGLTPLQLAVRSGYLGVTEELLRRGARPGVTTKAGLCLRCLAGSCGHRYLSEWLFYMGIADGEDGHCAC 429
            K  ++ G RLL+A+R GDT+AMG +LA GD++V+ V R NGWTAVMEAAEHGSLE V +L+DKGADLER+ NKGLTPLQLAVRSG+LGVTEELL RGARP VTTKAGLCLRCLA S GH YL++WLF MG+ADG DG CAC
Sbjct:  241 KAAEEAGRRLLEASRVGDTLAMGRVLASGDVDVECVGRGNGWTAVMEAAEHGSLEAVSFLLDKGADLERTNNKGLTPLQLAVRSGHLGVTEELLIRGARPNVTTKAGLCLRCLANSMGHDYLADWLFAMGVADGVDGGCAC 381
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BLAST of mRNA_F-serratus_M_contig927.20667.1 vs. uniprot
Match: D8LB42_ECTSI (Protein tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB42_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 7.010e-65
Identity = 104/141 (73.76%), Postives = 120/141 (85.11%), Query Frame = 1 
Query:    7 KGVDDTGHRLLKAAREGDTVAMGEILARGDIEVDWVSRSNGWTAVMEAAEHGSLEGVCYLVDKGADLERSTNKGLTPLQLAVRSGYLGVTEELLRRGARPGVTTKAGLCLRCLAGSCGHRYLSEWLFYMGIADGEDGHCAC 429
            K  ++ G RLL+A+R GDT+AMG +LA GD++V+WV R NGWTAVMEAAEHGSLE V +L+DKGADLE + NKGLTPLQLAVRSG+LGVTEELL RGARP VTTKAGLCLRCLA S GH YL++WLF MG+ADG DG CAC
Sbjct:  241 KAAEEAGRRLLEASRVGDTLAMGRVLASGDVDVEWVGRGNGWTAVMEAAEHGSLEAVSFLLDKGADLEHTNNKGLTPLQLAVRSGHLGVTEELLIRGARPNVTTKAGLCLRCLANSMGHGYLADWLFAMGVADGVDGGCAC 381
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BLAST of mRNA_F-serratus_M_contig927.20667.1 vs. uniprot
Match: A0A848XT09_9BACT (Tetratricopeptide repeat protein n=1 Tax=Rhodothermaceae bacterium TaxID=2026787 RepID=A0A848XT09_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 4.060e-6
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:  106 DWVSRSN---GWTAVMEAAEHGSLEGVCYLVDKGADLERSTNKGLTPLQLAVRSGYLGVTEELLRRGARP 306
            DW   +N   GWT +  A   G    V YL+D+GADLERS N G  PL LA+ +G+ G+ + L   GA P
Sbjct:  128 DWNPHTNARLGWTPLQWAVVIGHEPTVAYLIDRGADLERSLNGG-PPLSLALEAGHTGIADLLRAAGADP 196
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BLAST of mRNA_F-serratus_M_contig927.20667.1 vs. uniprot
Match: A0A2N1LGP7_TRIHA (Uncharacterized protein (Fragment) n=1 Tax=Trichoderma harzianum TaxID=5544 RepID=A0A2N1LGP7_TRIHA)

HSP 1 Score: 51.6 bits (122), Expect = 1.490e-5
Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:  124 NGWTAVMEAAEHGSLEGVCYLVDKGADLERSTNKGLTPLQLAVRS 258
            NGWT +   A  G ++G  +L+D+GA++E  TNKG TPL LA+R+
Sbjct:    8 NGWTELHYMASQGKIDGAKFLLDQGANIEAKTNKGNTPLFLAIRN 52
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BLAST of mRNA_F-serratus_M_contig927.20667.1 vs. uniprot
Match: UPI00195598C1 (ankyrin repeat domain-containing protein 53 n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI00195598C1)

HSP 1 Score: 52.0 bits (123), Expect = 3.810e-5
Identity = 40/119 (33.61%), Postives = 56/119 (47.06%), Query Frame = 1 
Query:   43 AAREGDTVAMGEILARGD-IEVDWVSRSNG----WTAVMEAAEHGSLEGVCYLVDKGADLERSTNKGLTPLQLAVRSGYLGVTEELLRRGARPGVTTKAGLCLRCLAGSCGHRYLSEWL 384
            AA  G    M  +L  GD ++VD  S   G       +   +   S   + YL++ GA +  ST++GLTPL LA   G +  TE L+R GA      K G     LA   GHR ++ +L
Sbjct:   61 AALHGHLACMELLLEAGDCVDVD-ASCPQGRRPLHMVLTTQSRQNSHACLLYLLEHGAQINVSTDEGLTPLHLAAAEGLMDCTETLVRNGADTHARDKRGHTALDLARIWGHRLIARFL 178
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BLAST of mRNA_F-serratus_M_contig927.20667.1 vs. uniprot
Match: A0A3G7JKW3_9PSED (Formyl_trans_N domain-containing protein n=38 Tax=Pseudomonas TaxID=286 RepID=A0A3G7JKW3_9PSED)

HSP 1 Score: 52.0 bits (123), Expect = 5.410e-5
Identity = 36/105 (34.29%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:   34 LLKAAREGDTVAMGEILARGDIEVDWVSRSNGWTAVMEAAEHGSLEGVCYLVDKGADLERSTNKGLTPLQLAVRSGYLGVTEE----LLRRGARPGVTTKAGLCL 336
            +LKA  +GD  A+  +  R +I     +   GWT ++ A+  G+ E V +L+ +GAD ER+ NKG TPL  A  +   G   +    LLR+GA+      +G  L
Sbjct:  274 MLKACEQGDLEAV--MALRANIAGYNDANPQGWTPLIVASYAGAYEVVDWLMQQGADPERTNNKGTTPLMYAKDAFLAGRCRKTFPLLLRKGAKLEAVDHSGRAL 376
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BLAST of mRNA_F-serratus_M_contig927.20667.1 vs. uniprot
Match: A0A811LHE4_BURXY ((pine wood nematode) hypothetical protein n=2 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A811LHE4_BURXY)

HSP 1 Score: 52.0 bits (123), Expect = 6.590e-5
Identity = 34/91 (37.36%), Postives = 48/91 (52.75%), Query Frame = 1 
Query:   37 LKAAREGDTVAMGEILARGDIEVDWVSRSNGWTAVMEAAEHGSLEGVCYLVDKGADLERST-NKGLTPLQLAVRSGYLGVTEELLRRGARP 306
            L  A E  ++ M  +L       D  SR  G T +MEAA HG++E + YL+ KG D+ +S+ N   T L L+   G+   T+ LL  GA P
Sbjct:  580 LVCAAENASLPMCNLLLENGAGKDSYSRE-GRTPLMEAARHGNIEIIDYLILKGVDVNKSSPNNDATALSLSCLYGHAEATKLLLMNGANP 669
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BLAST of mRNA_F-serratus_M_contig927.20667.1 vs. uniprot
Match: A0A7S3H1Q3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H1Q3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 9.910e-5
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:  130 WTAVMEAAEHGSLEGVCYLVDKGADLERSTNKGLTPLQLAVRSGYLGVTEELLRRGARPGVTT 318
            W+A+  A   G+   V  L+   A  E +TNKG TPL LAV SG L    ELL+ GA P ++T
Sbjct:   74 WSALHSACASGNFPVVKDLLALKAKFETTTNKGQTPLHLAVYSGSLDCVNELLKYGANPNIST 136
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig927.20667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KQU2_9PHAE6.650e-6573.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB42_ECTSI7.010e-6573.76Protein tyrosine kinase n=1 Tax=Ectocarpus silicul... [more]
A0A848XT09_9BACT4.060e-644.29Tetratricopeptide repeat protein n=1 Tax=Rhodother... [more]
A0A2N1LGP7_TRIHA1.490e-548.89Uncharacterized protein (Fragment) n=1 Tax=Trichod... [more]
UPI00195598C13.810e-533.61ankyrin repeat domain-containing protein 53 n=1 Ta... [more]
A0A3G7JKW3_9PSED5.410e-534.29Formyl_trans_N domain-containing protein n=38 Tax=... [more]
A0A811LHE4_BURXY6.590e-537.36(pine wood nematode) hypothetical protein n=2 Tax=... [more]
A0A7S3H1Q3_9STRA9.910e-544.44Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig927contigF-serratus_M_contig927:216024..217241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue1.8e-56
Seed eggNOG ortholog2880.D8LB42
Preferred nameRIPK3
KEGG koko:K08332,ko:K08841,ko:K08847
KEGG Pathwayko04217,ko04621,ko04623,ko04668,map04217,map04621,map04623,map04668
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0001776,GO:0001817,GO:0001910,GO:0001914,GO:0001932,GO:0001934,GO:0002260,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002685,GO:0002691,GO:0002694,GO:0002697,GO:0002703,GO:0002706,GO:0002709,GO:0002819,GO:0002822,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004672,GO:0004674,GO:0004704,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0007249,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010921,GO:0010922,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012501,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030234,GO:0030334,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031341,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032649,GO:0032879,GO:0032944,GO:0033077,GO:0033674,GO:0035303,GO:0035306,GO:0035556,GO:0036211,GO:0038061,GO:0040012,GO:0042110,GO:0042127,GO:0042129,GO:0042325,GO:0042327,GO:0042592,GO:0042802,GO:0042981,GO:0043029,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043412,GO:0043549,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045321,GO:0045859,GO:0045860,GO:0045935,GO:0045937,GO:0046006,GO:0046649,GO:0046777,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048535,GO:0048536,GO:0048538,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048872,GO:0050670,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051249,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051270,GO:0051291,GO:0051336,GO:0051338,GO:0051340,GO:0051341,GO:0051345,GO:0051347,GO:0051351,GO:0051353,GO:0051716,GO:0060255,GO:0060544,GO:0060545,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070228,GO:0070232,GO:0070235,GO:0070265,GO:0070266,GO:0070663,GO:0071704,GO:0071840,GO:0080090,GO:0097190,GO:0097300,GO:0097435,GO:0098772,GO:0140096,GO:0140110,GO:1901564,GO:1902531,GO:1902533,GO:1902680,GO:1903506,GO:1903508,GO:1990000,GO:2000106,GO:2000112,GO:2000145,GO:2000377,GO:2000379,GO:2000401,GO:2000404,GO:2000407,GO:2000449,GO:2000452,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0515@1,COG0666@1,KOG0192@2759,KOG4177@2759
EC2.7.11.1,2.7.12.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03029,ko04131
Exons3
Model size434
Cds size432
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig927.20667.1prot_F-serratus_M_contig927.20667.1Fucus serratus malepolypeptideF-serratus_M_contig927 216024..217240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932678.1455593-CDS-F-serratus_M_contig927:216023..2162201622932678.1455593-CDS-F-serratus_M_contig927:216023..216220Fucus serratus maleCDSF-serratus_M_contig927 216024..216220 +
1690964417.9974558-CDS-F-serratus_M_contig927:216023..2162201690964417.9974558-CDS-F-serratus_M_contig927:216023..216220Fucus serratus maleCDSF-serratus_M_contig927 216024..216220 +
1622932678.1638443-CDS-F-serratus_M_contig927:216691..2168691622932678.1638443-CDS-F-serratus_M_contig927:216691..216869Fucus serratus maleCDSF-serratus_M_contig927 216692..216869 +
1690964418.0101957-CDS-F-serratus_M_contig927:216691..2168691690964418.0101957-CDS-F-serratus_M_contig927:216691..216869Fucus serratus maleCDSF-serratus_M_contig927 216692..216869 +
1622932678.1911433-CDS-F-serratus_M_contig927:217183..2172401622932678.1911433-CDS-F-serratus_M_contig927:217183..217240Fucus serratus maleCDSF-serratus_M_contig927 217184..217240 +
1690964418.0222943-CDS-F-serratus_M_contig927:217183..2172401690964418.0222943-CDS-F-serratus_M_contig927:217183..217240Fucus serratus maleCDSF-serratus_M_contig927 217184..217240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig927.20667.1

>prot_F-serratus_M_contig927.20667.1 ID=prot_F-serratus_M_contig927.20667.1|Name=mRNA_F-serratus_M_contig927.20667.1|organism=Fucus serratus male|type=polypeptide|length=144bp
RVKGVDDTGHRLLKAAREGDTVAMGEILARGDIEVDWVSRSNGWTAVMEA
AEHGSLEGVCYLVDKGADLERSTNKGLTPLQLAVRSGYLGVTEELLRRGA
RPGVTTKAGLCLRCLAGSCGHRYLSEWLFYMGIADGEDGHCACY
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mRNA from alignment at F-serratus_M_contig927:216024..217241+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig927.20667.1 ID=mRNA_F-serratus_M_contig927.20667.1|Name=mRNA_F-serratus_M_contig927.20667.1|organism=Fucus serratus male|type=mRNA|length=1218bp|location=Sequence derived from alignment at F-serratus_M_contig927:216024..217241+ (Fucus serratus male)
CGGGTGAAGGGCGTGGATGACACCGGGCACCGGCTGTTGAAGGCGGCGCG
AGAGGGCGATACCGTGGCCATGGGCGAGATTTTGGCGAGAGGCGACATCG
AGGTGGACTGGGTCAGTCGGAGTAACGGGTGGACAGCGGTAATGGAGGCG
GCGGAGCACGGATCGTTGGAAGGCGTATGCTACCTGGTGGACAAGGGGTG
AGATAGGCGTGCTCAGTCGTGGAAGTTTATGTAGTTCATGAGTTGTTGTT
GTTTTTGTTTTTTTTCCATGCCTTATCCCGTAGGGAGGGTTTTGTGTTGT
TTTTTCTCTTCCAGGATACTAATAATATTACTATTACGATGTGCCGAACC
GGGCCGCTCTTGTTGCAGCGTTTGTTTGGTGTTACTATACTATACTATAC
TGTAATGTAATGTAACTATTAATGTTAATATTTTGTATATGTAACGAATG
TAACGAAAGAAGGGGTCAAGGGGAAGATCCTATCCTATCCGCGATGAACG
TACACCATTGCTTGCTAACTTCACATGGGGTAATATTTTAACTCAGTATC
ATGCAGTAGTACCTTATATTTGCCTTGTCGACACCATCCGTCGCCTCACT
CATCCTGGGCGACGGCTATAAATCATGGACATCGTCGCACTCGCCCCCAT
GTATCCCCCTTACCTCAGGGCGGACCTGGAGCGTTCCACCAATAAGGGCC
TGACGCCGCTTCAGCTCGCCGTCCGGTCCGGCTACCTGGGGGTTACAGAA
GAGCTTCTGAGACGAGGGGCTCGCCCTGGCGTGACCACCAAGGCTGGCCT
CTGCCTACGCTGCCTCGCGGGCTCCTGCGGTCATCGTTACCTCTCGGTAA
GTTCAGGCAATAGATCTTCAAAGCAGTTGTTGGTTTCTGTGCGCTCATGA
GTGCGTGGCGGTGGGAATGCGAAGCGTTTGACGGGGCGTTTGAGGCTGTT
AGAATGGACGCATCTCGGGATGGATGGAGGGTGTCCTGTcCCCCTGGGGC
AACCCTTGGCTTATACAAAACAATTTGTAAGTAGTATAATACATAACGTT
GTTAGATTGATGCCATGCCATACCTCTCCCGGTTTTCCTTGCCGAGTCTT
GAACGGCCTCGGGTATCCTCGCTTTCATCTCCCCTTTACAATATTTTCCA
TTTCTGTCAGGAGTGGCTGTTCTACATGGGCATCGCGGACGGCGAGGACG
GGCACTGCGCCTGTTACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig927:216024..217241+

>mRNA_F-serratus_M_contig927.20667.1 ID=mRNA_F-serratus_M_contig927.20667.1|Name=mRNA_F-serratus_M_contig927.20667.1|organism=Fucus serratus male|type=CDS|length=864bp|location=Sequence derived from alignment at F-serratus_M_contig927:216024..217241+ (Fucus serratus male)
CGGGTGAAGGGCGTGGATGACACCGGGCACCGGCTGTTGAAGGCGGCGCG
AGAGGGCGATACCGTGGCCATGGGCGAGATTTTGGCGAGAGGCGACATCG
AGGTGGACTGGGTCAGTCGGAGTAACGGGTGGACAGCGGTAATGGAGGCG
GCGGAGCACGGATCGTTGGAAGGCGTATGCTACCTGGTGGACAAGGGCGG
GTGAAGGGCGTGGATGACACCGGGCACCGGCTGTTGAAGGCGGCGCGAGA
GGGCGATACCGTGGCCATGGGCGAGATTTTGGCGAGAGGCGACATCGAGG
TGGACTGGGTCAGTCGGAGTAACGGGTGGACAGCGGTAATGGAGGCGGCG
GAGCACGGATCGTTGGAAGGCGTATGCTACCTGGTGGACAAGGGGGCGGA
CCTGGAGCGTTCCACCAATAAGGGCCTGACGCCGCTTCAGCTCGCCGTCC
GGTCCGGCTACCTGGGGGTTACAGAAGAGCTTCTGAGACGAGGGGCTCGC
CCTGGCGTGACCACCAAGGCTGGCCTCTGCCTACGCTGCCTCGCGGGCTC
CTGCGGTCATCGTTACCTCTCGGGCGGACCTGGAGCGTTCCACCAATAAG
GGCCTGACGCCGCTTCAGCTCGCCGTCCGGTCCGGCTACCTGGGGGTTAC
AGAAGAGCTTCTGAGACGAGGGGCTCGCCCTGGCGTGACCACCAAGGCTG
GCCTCTGCCTACGCTGCCTCGCGGGCTCCTGCGGTCATCGTTACCTCTCG
GAGTGGCTGTTCTACATGGGCATCGCGGACGGCGAGGACGGGCACTGCGC
CTGTTACGAGTGGCTGTTCTACATGGGCATCGCGGACGGCGAGGACGGGC
ACTGCGCCTGTTAC
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