mRNA_F-serratus_M_contig927.20666.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig927.20666.1
Unique NamemRNA_F-serratus_M_contig927.20666.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig927.20666.1 vs. uniprot
Match: A0A6H5KQU2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 4.290e-19
Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:   94 HLEVTRLLVVGAGLSPSTPDGGGASAAALALAGNHKDVLRLLQKSCPGVSLGLEHR--RGARSSNAA 288
            HL VTR LVVGAGLSPSTPDGGGASAAALALAGNHK V+RLLQK+CPGV +G+  R     RS +AA
Sbjct:  124 HLAVTRFLVVGAGLSPSTPDGGGASAAALALAGNHKSVVRLLQKNCPGVPMGVPKRSNNSRRSLDAA 190
[Close]
BLAST of mRNA_F-serratus_M_contig927.20666.1 vs. uniprot
Match: D8LB42_ECTSI (Protein tyrosine kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB42_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.520e-18
Identity = 50/73 (68.49%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:   97 LEVTRLLVVGAGLSPSTPDGGGASAAALALAGNHKDVLRLLQKSCPGVSLGLEHR-RGARSSNAALGIVLNSK 312
            L VTR LVVGAGLSPSTPDGGGASAAALALAGNHK V+RLLQK+CPGV +G+  R   +R S  A G + +S+
Sbjct:  125 LAVTRFLVVGAGLSPSTPDGGGASAAALALAGNHKSVVRLLQKNCPGVPMGVPKRSNNSRRSLDAAGFLPSSE 197
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig927.20666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQU2_9PHAE4.290e-1974.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB42_ECTSI1.520e-1868.49Protein tyrosine kinase n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig927contigF-serratus_M_contig927:214972..215996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.9e-15
Seed eggNOG ortholog2880.D8LB42
Preferred nameRIPK3
KEGG koko:K08332,ko:K08841,ko:K08847
KEGG Pathwayko04217,ko04621,ko04623,ko04668,map04217,map04621,map04623,map04668
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0001776,GO:0001817,GO:0001910,GO:0001914,GO:0001932,GO:0001934,GO:0002260,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002685,GO:0002691,GO:0002694,GO:0002697,GO:0002703,GO:0002706,GO:0002709,GO:0002819,GO:0002822,GO:0003674,GO:0003712,GO:0003713,GO:0003824,GO:0004672,GO:0004674,GO:0004704,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0007154,GO:0007165,GO:0007249,GO:0007275,GO:0008150,GO:0008152,GO:0008219,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010921,GO:0010922,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012501,GO:0016043,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030234,GO:0030334,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031341,GO:0031399,GO:0031401,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032649,GO:0032879,GO:0032944,GO:0033077,GO:0033674,GO:0035303,GO:0035306,GO:0035556,GO:0036211,GO:0038061,GO:0040012,GO:0042110,GO:0042127,GO:0042129,GO:0042325,GO:0042327,GO:0042592,GO:0042802,GO:0042981,GO:0043029,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043170,GO:0043412,GO:0043549,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045321,GO:0045859,GO:0045860,GO:0045935,GO:0045937,GO:0046006,GO:0046649,GO:0046777,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048535,GO:0048536,GO:0048538,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048872,GO:0050670,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050863,GO:0050865,GO:0050896,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051246,GO:0051247,GO:0051249,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051270,GO:0051291,GO:0051336,GO:0051338,GO:0051340,GO:0051341,GO:0051345,GO:0051347,GO:0051351,GO:0051353,GO:0051716,GO:0060255,GO:0060544,GO:0060545,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070228,GO:0070232,GO:0070235,GO:0070265,GO:0070266,GO:0070663,GO:0071704,GO:0071840,GO:0080090,GO:0097190,GO:0097300,GO:0097435,GO:0098772,GO:0140096,GO:0140110,GO:1901564,GO:1902531,GO:1902533,GO:1902680,GO:1903506,GO:1903508,GO:1990000,GO:2000106,GO:2000112,GO:2000145,GO:2000377,GO:2000379,GO:2000401,GO:2000404,GO:2000407,GO:2000449,GO:2000452,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0515@1,COG0666@1,KOG0192@2759,KOG4177@2759
EC2.7.11.1,2.7.12.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03029,ko04131
Exons2
Model size320
Cds size315
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig927.20666.1prot_F-serratus_M_contig927.20666.1Fucus serratus malepolypeptideF-serratus_M_contig927 214975..215996 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932678.0122128-UTR-F-serratus_M_contig927:214971..2149741622932678.0122128-UTR-F-serratus_M_contig927:214971..214974Fucus serratus maleUTRF-serratus_M_contig927 214972..214974 +
1690964417.9657013-UTR-F-serratus_M_contig927:214971..2149741690964417.9657013-UTR-F-serratus_M_contig927:214971..214974Fucus serratus maleUTRF-serratus_M_contig927 214972..214974 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932678.02665-CDS-F-serratus_M_contig927:214974..2150621622932678.02665-CDS-F-serratus_M_contig927:214974..215062Fucus serratus maleCDSF-serratus_M_contig927 214975..215062 +
1690964417.9787755-CDS-F-serratus_M_contig927:214974..2150621690964417.9787755-CDS-F-serratus_M_contig927:214974..215062Fucus serratus maleCDSF-serratus_M_contig927 214975..215062 +
1622932678.0474467-CDS-F-serratus_M_contig927:215769..2159961622932678.0474467-CDS-F-serratus_M_contig927:215769..215996Fucus serratus maleCDSF-serratus_M_contig927 215770..215996 +
1690964417.9874523-CDS-F-serratus_M_contig927:215769..2159961690964417.9874523-CDS-F-serratus_M_contig927:215769..215996Fucus serratus maleCDSF-serratus_M_contig927 215770..215996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig927.20666.1

>prot_F-serratus_M_contig927.20666.1 ID=prot_F-serratus_M_contig927.20666.1|Name=mRNA_F-serratus_M_contig927.20666.1|organism=Fucus serratus male|type=polypeptide|length=105bp
MSKVLLQGGCPADCVTKEGKTALHVSSELGHLEVTRLLVVGAGLSPSTPD
GGGASAAALALAGNHKDVLRLLQKSCPGVSLGLEHRRGARSSNAALGIVL
NSKRD
back to top

mRNA from alignment at F-serratus_M_contig927:214972..215996+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig927.20666.1 ID=mRNA_F-serratus_M_contig927.20666.1|Name=mRNA_F-serratus_M_contig927.20666.1|organism=Fucus serratus male|type=mRNA|length=1025bp|location=Sequence derived from alignment at F-serratus_M_contig927:214972..215996+ (Fucus serratus male)
GCGATGTCCAAGGTTCTCCTACAAGGTGGTTGTCCCGCCGACTGCGTGAC
CAAAGAGGGAAAGACGGCCCTTCATGTGTCCTCCGAGCTCGGTGAGATAT
GAGAGATGAGAGATGGAAGCACGCCGAGGGCGCGCGTTTTCTCTCGTGGG
GCGCCGGACGTAGATGTGGCTTTAGAATAGGTAGCTATGTAGCTCTATTT
ATAGCTCTACAAACAGTAGCGCTGAAATACCTGCCAATTTTTCGCACTTT
GTTTAGCTCTATACGTATATGTTTTACGGATTTTGTTTTTGTGAGATGTA
CGGACATGAAATATAATTTATGCTGCGGTCGGGGTTTATGCAGGCAATCT
TGGTTGGGATGAATTCTTTGAACGTCAGGAAGGAGAGGGACTCGTGTTTA
CTTTCCTTTACTACAGTATTAATGCGATACTTGAGCACAAAGCTCGTGGT
CTCGCGCAAAGTTCCTGGCTGTGTACACAATAGCTAGGTTATATTGCGAA
CGTGTTCTGCCAGAGAGTTGTTTGGTACTTACAGGAGTATAGTATATGAA
CCAAAGTGCACTTTCAGCAACGATCGACCCTGATCTATTCATTGTGTGTT
TGGTCTCATACAACCTTCGTCCCTCCTTTGTTACTAATGGGTATTTTTTA
CTATATTATTAATAGTAATCCAGAGTATAGTGTGCATAAATAGCTCCGGC
GAGATGTCGAGATGCCTCGTCCAAACGAAAAAGAAGATGTTGCACATGTT
TGAGCAACGCCCAACATTGTAATTGTACCATGCAATGCGTTGAATTAGGG
CACCTGGAAGTAACGAGGCTACTCGTGGTCGGAGCTGGCCTGTCCCCTTC
GACGCCCGACGGGGGGGGCGCCTCGGCAGCGGCGCTTGCGCTCGCGGGGA
ACCATAAGGACGTGCTTCGATTGCTCCAGAAATCTTGCCCGGGTGTCTCT
CTTGGATTAGAGCATAGAAGGGGGGCCAGGAGTTCCAACGCAGCGTTGGG
GATTGTATTAAATTCGAAGCGCGAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig927:214972..215996+

>mRNA_F-serratus_M_contig927.20666.1 ID=mRNA_F-serratus_M_contig927.20666.1|Name=mRNA_F-serratus_M_contig927.20666.1|organism=Fucus serratus male|type=CDS|length=630bp|location=Sequence derived from alignment at F-serratus_M_contig927:214972..215996+ (Fucus serratus male)
ATGTCCAAGGTTCTCCTACAAGGTGGTTGTCCCGCCGACTGCGTGACCAA
AGAGGGAAAGACGGCCCTTCATGTGTCCTCCGAGCTCGATGTCCAAGGTT
CTCCTACAAGGTGGTTGTCCCGCCGACTGCGTGACCAAAGAGGGAAAGAC
GGCCCTTCATGTGTCCTCCGAGCTCGGGCACCTGGAAGTAACGAGGCTAC
TCGTGGTCGGAGCTGGCCTGTCCCCTTCGACGCCCGACGGGGGGGGCGCC
TCGGCAGCGGCGCTTGCGCTCGCGGGGAACCATAAGGACGTGCTTCGATT
GCTCCAGAAATCTTGCCCGGGTGTCTCTCTTGGATTAGAGCATAGAAGGG
GGGCCAGGAGTTCCAACGCAGCGTTGGGGATTGTATTAAATTCGAAGCGC
GACGGCACCTGGAAGTAACGAGGCTACTCGTGGTCGGAGCTGGCCTGTCC
CCTTCGACGCCCGACGGGGGGGGCGCCTCGGCAGCGGCGCTTGCGCTCGC
GGGGAACCATAAGGACGTGCTTCGATTGCTCCAGAAATCTTGCCCGGGTG
TCTCTCTTGGATTAGAGCATAGAAGGGGGGCCAGGAGTTCCAACGCAGCG
TTGGGGATTGTATTAAATTCGAAGCGCGAC
back to top