mRNA_F-serratus_M_contig927.20657.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig927.20657.1
Unique NamemRNA_F-serratus_M_contig927.20657.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig927.20657.1 vs. uniprot
Match: D8LB47_ECTSI (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB47_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 5.800e-54
Identity = 130/283 (45.94%), Postives = 166/283 (58.66%), Query Frame = 1 
Query:   40 DASLVEGTPRRCGRGSKT-DLAGFYAPLMVSNIGGTPKYRS-LSIVQRSTLDWMVWREVVEDMSKTRKMHSGQLGFEKT-----IRGGILGHLAAEEALSCVTTLIRNAPR-----------ASAEENVVVKTSLPHGATLVIAPTKDAAEEWSKEL-GASTRLSVLSYVMPLKERRRLRAEQAAVFDVVVTTYDILRAKEVARAVKD----------VANVGRWHTRRPQEG-RKRVS---KTETMASLLHKVWWHRVVASGAQVLANQRSARANAVAGLEG 789
            D+SL EGTPRR G G++   L GFY PL V+N+    +  S LS +Q+STL WM+WRE  E   ++       +  +       I+GG+LGHL ++EA +CV  ++R                S    +   T LP G TL++APTK+AA  WS  L   S  LSVL+YVMPL+ERRRL A+Q A FDVVVTTYD+L+AKEV R V+           +    +W TR  +EG +KR S   KT+ M SLLH VWW RVVA GAQ+LA QRSARA A   L G
Sbjct: 1029 DSSLAEGTPRRRGAGARDRSLGGFYPPLQVANLANKAREGSTLSTLQKSTLQWMLWRERGEKGGRSAXXXXXXVSDDDDDGAIDIKGGLLGHLPSDEASTCVHAVVRAGVTFNDGDGSGRKVGSRARRIHTGTGLPCGPTLILAPTKEAAWRWSDRLESGSGGLSVLNYVMPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRTRNAKEGGQKRTSASSKTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALALMG 1311
[Close]
BLAST of mRNA_F-serratus_M_contig927.20657.1 vs. uniprot
Match: A0A6H5KIY1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY1_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 3.770e-51
Identity = 131/287 (45.64%), Postives = 165/287 (57.49%), Query Frame = 1 
Query:   43 ASLVEGTPRRCGRGSKTD-LAGFYAPLMVSNIGGTPKYR-SLSIVQRSTLDWMVWREVVEDMSKTRKMHSGQLGFEKT-------IRGGILGHLAAEEALSCVTTLIRNAP-------------RASAEENVVVKTSLPHGATLVIAPTKDAAEEWSKEL-GASTRLSVLSYVMPLKERRRLRAEQAAVFDVVVTTYDILRAKEVARAVKD----------VANVGRWHTRRPQE-GRKR----VSKTETMASLLHKVWWHRVVASGAQVLANQRSARANAVAGLEG 789
            +SL EGTPRR G G++   L GFY PL V+N+    +   +LS +Q STL WM+WRE  E   ++       +            I+GG+LGHL++EEA +C+  L+R                RA    N    T LP G+TL++APTK+AA  WS  L   S  LSVLSYVMPL+ERRRL A+Q A FDVVVTTYD+L+AKEV R V+           +    +W TR  +E G+KR     S T+ M SLLH VWW RVVA GAQ+LA QRSARA A   L G
Sbjct: 1027 SSLAEGTPRRRGAGARDCYLGGFYPPLQVANLASKAREGLTLSTLQESTLQWMLWRERGEKGGRSAVAAGASVXXXXXXXXXAIDIKGGLLGHLSSEEASACLHALVRAGVTFNDGDGSRGMVGRARRTHN---GTGLPCGSTLILAPTKEAAWRWSDRLESGSGGLSVLSYVMPLRERRRLSAKQVAAFDVVVTTYDVLKAKEVPRGVEAKEATSPRSWALPGSTQWRTRNGKEAGQKRSSSSASMTDHMVSLLHGVWWDRVVADGAQILATQRSARAVAALTLAG 1310
[Close]
BLAST of mRNA_F-serratus_M_contig927.20657.1 vs. uniprot
Match: A0A1V9ZDT9_9STRA (SNF2 family DNA/RNA helicase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDT9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 9.180e-8
Identity = 59/167 (35.33%), Postives = 83/167 (49.70%), Query Frame = 1 
Query:  274 RGGILG-HLAAEEALSCVTTLIRNAPRASAEENVVVKTSLPHGATLVIAPTKDAAEEWSKELGASTRLSVLSYVMPLKERRRLRAEQAAVFDVVVTTYDILRAKEVARAVKDVANVGRWHTRRPQEGRKRVSKTETMASLLHKVWWHRVVASGAQVLANQRSARANA 771
            RGGIL   +   + +SC+  LI  +PR                 TL+IAP    A+ W  E+ A T LSV  Y    ++R R + +  A FDV+++TYD+LR KE A     VA+ GR          KR  + + + S LHK+ W RV+   A ++AN  SAR  A
Sbjct:  405 RGGILADEMGLGKTISCLA-LIEQSPRGRP--------------TLIIAPLSVLAQ-WEFEVKAKTSLSVGVYHGTGRKRFRHQPDFCA-FDVILSTYDVLRMKETA---VPVASAGRSRDT-SWIAAKRQREEKQLLSRLHKIHWERVILDEAHLIANMASARTQA 550
[Close]
BLAST of mRNA_F-serratus_M_contig927.20657.1 vs. uniprot
Match: A0A067CBP1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CBP1_SAPPC)

HSP 1 Score: 62.0 bits (149), Expect = 2.980e-7
Identity = 65/203 (32.02%), Postives = 95/203 (46.80%), Query Frame = 1 
Query:  172 QRSTLDWMVWREVVEDMSKTRKMHSGQLGFEKTIRGGILG-HLAAEEALSCVTTLIRNAPRASAEENVVVKTSLPHGATLVIAPTKDAAEEWSKELGASTRLSVLSYVMPLKERRRLRAEQAAVFDVVVTTYDILRAKEVARAVKDVANVGRWHTRRPQE--GRKRVSKTETMASLLHKVWWHRVVASGAQVLANQRSARANA 771
            Q   +DWM  RE              + G    I+GGIL   +   + +SC+  + R     S + N   K S P   TL+IAP      +W +E+   T LSV  Y    ++R R R      FD+V++TYD+LR  EVA  V   + V R   R+       KR+ + + + S LH+V W RV+   A ++AN  +AR  A
Sbjct:  361 QERAVDWMWQRE--------------RPGVLDEIKGGILADEMGLGKTVSCLALIER-----SRDANATEK-SRP---TLIIAPLS-LLHQWEREIKHKTSLSVGVYHGTDRKRFR-RDPDFHAFDIVLSTYDVLRLPEVAIPV---SMVYRTAPRKDTSWIATKRLREEKVLLSKLHRVHWDRVILDEAHLIANMTAARTQA 535
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig927.20657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LB47_ECTSI5.800e-5445.94SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KIY1_9PHAE3.770e-5145.64SNF2-rel_dom domain-containing protein n=1 Tax=Ect... [more]
A0A1V9ZDT9_9STRA9.180e-835.33SNF2 family DNA/RNA helicase n=1 Tax=Achlya hypogy... [more]
A0A067CBP1_SAPPC2.980e-732.02Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig927contigF-serratus_M_contig927:120262..122435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue5.7e-08
Seed eggNOG ortholog112098.XP_008613588.1
KEGG koko:K15083,ko:K15173
KEGG Pathwayko04918,map04918
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP binding
EggNOG OGsCOG0141@1,KOG4439@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021,ko03400
Exons5
Model size793
Cds size792
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig927.20657.1prot_F-serratus_M_contig927.20657.1Fucus serratus malepolypeptideF-serratus_M_contig927 120262..122435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932676.8698487-CDS-F-serratus_M_contig927:120261..1203841622932676.8698487-CDS-F-serratus_M_contig927:120261..120384Fucus serratus maleCDSF-serratus_M_contig927 120262..120384 +
1690964417.433854-CDS-F-serratus_M_contig927:120261..1203841690964417.433854-CDS-F-serratus_M_contig927:120261..120384Fucus serratus maleCDSF-serratus_M_contig927 120262..120384 +
1622932676.9166965-CDS-F-serratus_M_contig927:120747..1210041622932676.9166965-CDS-F-serratus_M_contig927:120747..121004Fucus serratus maleCDSF-serratus_M_contig927 120748..121004 +
1690964417.4500346-CDS-F-serratus_M_contig927:120747..1210041690964417.4500346-CDS-F-serratus_M_contig927:120747..121004Fucus serratus maleCDSF-serratus_M_contig927 120748..121004 +
1622932676.9357626-CDS-F-serratus_M_contig927:121429..1216161622932676.9357626-CDS-F-serratus_M_contig927:121429..121616Fucus serratus maleCDSF-serratus_M_contig927 121430..121616 +
1690964417.4627867-CDS-F-serratus_M_contig927:121429..1216161690964417.4627867-CDS-F-serratus_M_contig927:121429..121616Fucus serratus maleCDSF-serratus_M_contig927 121430..121616 +
1622932676.9499257-CDS-F-serratus_M_contig927:121766..1218981622932676.9499257-CDS-F-serratus_M_contig927:121766..121898Fucus serratus maleCDSF-serratus_M_contig927 121767..121898 +
1690964417.4740016-CDS-F-serratus_M_contig927:121766..1218981690964417.4740016-CDS-F-serratus_M_contig927:121766..121898Fucus serratus maleCDSF-serratus_M_contig927 121767..121898 +
1622932676.967934-CDS-F-serratus_M_contig927:122342..1224351622932676.967934-CDS-F-serratus_M_contig927:122342..122435Fucus serratus maleCDSF-serratus_M_contig927 122343..122435 +
1690964417.4818308-CDS-F-serratus_M_contig927:122342..1224351690964417.4818308-CDS-F-serratus_M_contig927:122342..122435Fucus serratus maleCDSF-serratus_M_contig927 122343..122435 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig927.20657.1

>prot_F-serratus_M_contig927.20657.1 ID=prot_F-serratus_M_contig927.20657.1|Name=mRNA_F-serratus_M_contig927.20657.1|organism=Fucus serratus male|type=polypeptide|length=264bp
DFGRGHQAQGKKADASLVEGTPRRCGRGSKTDLAGFYAPLMVSNIGGTPK
YRSLSIVQRSTLDWMVWREVVEDMSKTRKMHSGQLGFEKTIRGGILGHLA
AEEALSCVTTLIRNAPRASAEENVVVKTSLPHGATLVIAPTKDAAEEWSK
ELGASTRLSVLSYVMPLKERRRLRAEQAAVFDVVVTTYDILRAKEVARAV
KDVANVGRWHTRRPQEGRKRVSKTETMASLLHKVWWHRVVASGAQVLANQ
RSARANAVAGLEGG
back to top

mRNA from alignment at F-serratus_M_contig927:120262..122435+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig927.20657.1 ID=mRNA_F-serratus_M_contig927.20657.1|Name=mRNA_F-serratus_M_contig927.20657.1|organism=Fucus serratus male|type=mRNA|length=2174bp|location=Sequence derived from alignment at F-serratus_M_contig927:120262..122435+ (Fucus serratus male)
GACTTCGGGCGCGGGCATCAAGCGCAGGGCAAGAAGGCCGATGCATCGCT
AGTGGAGGGCACCCCGCGGCGGTGCGGACGCGGCTCCAAAACGGATCTTG
CCGGGTTTTACGCGCCACTGATGGTGAGGGTTGCGACTTTTATTTGATCT
TGAAAACTGAGGGAATGGACGGGAAAGTGGGCGGGAATTATCGTAGCGGT
TAGACCATGTCCCACTGTTGAGGATGGGATGACACGCGAGCCGCGTCAAC
GCCTTGGTTATCGAAATAGTAATGATAGCATTGGCTTTTCTAATATACAG
CTACCCTTCTTTTAGGTAGTATTAGCTGGTGTTTAATGCATGATTTAAAG
TCGTAGTATCAACAGGCAGAAATCGCTGGTAATCGATGCGGTACGGGTCG
CGATATCGTCGTAAAGGGCATTATCCCTTCACGTGGAACTAATCTTACAA
TGGAGTGCGCGGGGTGAATCATGGACAAAAACTCAGGTGTCCAATATCGG
TGGGACACCCAAGTATAGATCTCTGTCTATCGTGCAGAGGAGCACGCTTG
ACTGGATGGTGTGGCGAGAGGTTGTGGAGGACATGTCGAAGACGAGGAAA
ATGCATTCAGGCCAGCTAGGGTTTGAGAAGACCATCAGGGGAGGTATCCT
AGGACACCTTGCCGCGGAGGAAGCGTTGAGTTGCGTTACCACCCTCATCA
GGAACGCGCCGCGTGCTAGTGCGGAAGAGAACGTCGTCGTTAAGTGAGGC
TCTATACAAGTATTAATTACCATGCTTCACCAATTATTAAGTGTTAAAAG
CTTATGGTGTCATCGTTACGTAAGAGATGACGTCGTTTTGTTTTGTTTTC
CGTCGACTTACCAAATTTACAGCGTGCTGCGATTGGTGTACAGGTGTAAA
CAAAAGCGAAGCATAATGCGCAGGTGTACTCCTCCACCCCCCCCCCCGCA
GGCCCCCAATAATTTTGAGTTATCATTGATACCCACCCATTTACTAGAAA
AATACCATTAAACATCAATGAGGAATCTATGAAATATATGACATGTATGA
CACATCTTTGATATATCTTTGAGGTACTTATGGTACGTATTAATTTGTTC
GCATCAAATGCGTCTTAGCCGCTGTCTTACCGCTGCACCTCGTGAACGAC
CGCCCGGGTACGCGACAGGACGAGCCTTCCCCATGGCGCCACTCTGGTGA
TTGCGCCGACGAAAGATGCGGCAGAGGAATGGTCAAAGGAGCTGGGAGCT
AGCACTCGCTTATCTGTGTTGAGCTACGTTATGCCCTTGAAAGAGAGGCG
GCGGCTGAGAGCTGAACAGGCAGCCGTATTCGATGTGGTGGTGACGACGT
ACGACGTGAGCGAAGGCCAAAGACTTTCGCTGTTGCTTGCGTATTGGACT
TGCGTATTCAGTTTCAGCCCGTCGTTTTCTCGCTTTTTCCGATCCAGCCG
CAGCCACCTCTCGCCTAATGTTCTGAATGAGTTCGTTTCGGATGGTTTCG
TGCAGATATTGAGGGCGAAAGAGGTGGCTCGAGCTGTGAAAGATGTGGCG
AACGTTGGTCGCTGGCACACGAGGCGCCCTCAGGAGGGACGGAAAAGGGT
TTCTAAGACCGAGACCATGGCTTCTCTGCTGCACAAAGTGAGTTCTCCAA
CGCAGCTCCTTTTTGTTCCCCCTAAACTATTTTTAGTCATAGCTGCAAAA
AGTAGCAACTCACTCAAGCACGCGACCTTGATCTGTACAATCGCTGCAGG
TGTTGGTTGGGCTGTTTTATAAGACACTCTCGTTAGCTTTACTTTACTAG
TTTCTACGTTGGTATTGGCGCAAGTCACGTCATGTCATGTCCTGTCAGCT
CACGCCCCCGGCGTTTGATTTCTGAGAGATGCCATCGACTTTTATACTCT
ATTCCGCCCTTCACCGATTTCGCTTAAACTCTATTTCATGAGATACAAAA
AAGCATTCCGGAAGCGTTCTACCGTGAAACTGAGTGGAATTGAGTGGAAG
GGCGTCGCGAAAAATTCTTGTTCGGTTATATTTCTGCACCCGTTCTCTCA
TTCTAACTATAATACAATATAATATTCATAGGTTTGGTGGCACCGCGTGG
TAGCCAGCGGAGCTCAGGTTTTGGCCAACCAGCGGAGCGCACGAGCCAAC
GCCGTCGCTGGCTTGGAGGGGGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig927:120262..122435+

>mRNA_F-serratus_M_contig927.20657.1 ID=mRNA_F-serratus_M_contig927.20657.1|Name=mRNA_F-serratus_M_contig927.20657.1|organism=Fucus serratus male|type=CDS|length=1584bp|location=Sequence derived from alignment at F-serratus_M_contig927:120262..122435+ (Fucus serratus male)
GACTTCGGGCGCGGGCATCAAGCGCAGGGCAAGAAGGCCGATGCATCGCT
AGTGGAGGGCACCCCGCGGCGGTGCGGACGCGGCTCCAAAACGGATCTTG
CCGGGTTTTACGCGCCACTGATGGACTTCGGGCGCGGGCATCAAGCGCAG
GGCAAGAAGGCCGATGCATCGCTAGTGGAGGGCACCCCGCGGCGGTGCGG
ACGCGGCTCCAAAACGGATCTTGCCGGGTTTTACGCGCCACTGATGGTGT
CCAATATCGGTGGGACACCCAAGTATAGATCTCTGTCTATCGTGCAGAGG
AGCACGCTTGACTGGATGGTGTGGCGAGAGGTTGTGGAGGACATGTCGAA
GACGAGGAAAATGCATTCAGGCCAGCTAGGGTTTGAGAAGACCATCAGGG
GAGGTATCCTAGGACACCTTGCCGCGGAGGAAGCGTTGAGTTGCGTTACC
ACCCTCATCAGGAACGCGCCGCGTGCTAGTGCGGAAGAGAACGTCGTCGT
TAAGTGTCCAATATCGGTGGGACACCCAAGTATAGATCTCTGTCTATCGT
GCAGAGGAGCACGCTTGACTGGATGGTGTGGCGAGAGGTTGTGGAGGACA
TGTCGAAGACGAGGAAAATGCATTCAGGCCAGCTAGGGTTTGAGAAGACC
ATCAGGGGAGGTATCCTAGGACACCTTGCCGCGGAGGAAGCGTTGAGTTG
CGTTACCACCCTCATCAGGAACGCGCCGCGTGCTAGTGCGGAAGAGAACG
TCGTCGTTAAGACGAGCCTTCCCCATGGCGCCACTCTGGTGATTGCGCCG
ACGAAAGATGCGGCAGAGGAATGGTCAAAGGAGCTGGGAGCTAGCACTCG
CTTATCTGTGTTGAGCTACGTTATGCCCTTGAAAGAGAGGCGGCGGCTGA
GAGCTGAACAGGCAGCCGTATTCGATGTGGTGGTGACGACGTACGACGAC
GAGCCTTCCCCATGGCGCCACTCTGGTGATTGCGCCGACGAAAGATGCGG
CAGAGGAATGGTCAAAGGAGCTGGGAGCTAGCACTCGCTTATCTGTGTTG
AGCTACGTTATGCCCTTGAAAGAGAGGCGGCGGCTGAGAGCTGAACAGGC
AGCCGTATTCGATGTGGTGGTGACGACGTACGACATATTGAGGGCGAAAG
AGGTGGCTCGAGCTGTGAAAGATGTGGCGAACGTTGGTCGCTGGCACACG
AGGCGCCCTCAGGAGGGACGGAAAAGGGTTTCTAAGACCGAGACCATGGC
TTCTCTGCTGCACAAAATATTGAGGGCGAAAGAGGTGGCTCGAGCTGTGA
AAGATGTGGCGAACGTTGGTCGCTGGCACACGAGGCGCCCTCAGGAGGGA
CGGAAAAGGGTTTCTAAGACCGAGACCATGGCTTCTCTGCTGCACAAAGT
TTGGTGGCACCGCGTGGTAGCCAGCGGAGCTCAGGTTTTGGCCAACCAGC
GGAGCGCACGAGCCAACGCCGTCGCTGGCTTGGAGGGGGGGGTTTGGTGG
CACCGCGTGGTAGCCAGCGGAGCTCAGGTTTTGGCCAACCAGCGGAGCGC
ACGAGCCAACGCCGTCGCTGGCTTGGAGGGGGGG
back to top