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Homology
BLAST of mRNA_F-serratus_M_contig927.20652.1 vs. uniprot
Match: D8LBH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBH1_ECTSI) HSP 1 Score: 314 bits (805), Expect = 9.180e-100 Identity = 201/410 (49.02%), Postives = 265/410 (64.63%), Query Frame = 1
Query: 4 WVVVSAEQAEHAARKLRSETEKNKALQTRLEGHKRDRVLIYDAAMKQAAEREEEGVQDAKRMFERERLVMRVEVDHELLKINDLHEKRCRDYAQMVSDECEEDISKASAELREGWVREKKTIAQLVREGAEEDRQVAVITRAVMEHLQEEKKDQVTALREEICAEVKAEFENREMSLRDALQSEFQADLDGQLLLAEIRHQKEMDQLRTELRGDHAPSAEKAGEAIVVYSRGTKPKQRGRGDHGSXXXXXXXXXSLTPSPSLPRHSLQQKMSFQGARNGGNDSGVAPAPAVRGKSGLVKKLPIFRTPAQKA-PASSDIKTTEIALSKPLDYVSQ-------KHQDXXXXXXXXEKFDDSN-SITSALTVSPTKTSGIAVTPSMGVESTFIDKASTHEPQRPKKRGKRLFT 1206
W++VS EQ E A K+R + EKNKAL+T ++ HKR+RVLIYDAAMKQAA+RE EGV + K++ ER++ +MR EVD E+ KI+DL+++RCRDYA MVSDEC+ + SKA+ +LR+ W R+KKTI QLVR G EEDRQV+VI RAV+E LQEE++D++ +LR I ++VK EFE+RE++LRD L+S+FQADLDGQLLLAEIRHQKEM++LR EL G P+ E IVVY+ T P+ GRG S S TPSPS R L KM+ A G + + P + L +K P+F+TP QK P +S+ K D Q +H + E+ D+ + ITSAL VSPTK VTPS+G E + S+ RPKKR K+LF+
Sbjct: 91 WMIVSKEQVEQTAEKMRDQAEKNKALETTVKIHKRERVLIYDAAMKQAAKRELEGVNEVKQVLERQQGMMRAEVDQEMQKISDLYQERCRDYATMVSDECDGEDSKAATDLRKDWARQKKTIDQLVRSGGEEDRQVSVIARAVVEQLQEERRDEIASLRAAIYSDVKMEFESREVALRDTLESDFQADLDGQLLLAEIRHQKEMNRLRVELAGSEKPTTEAKTGEIVVYNPET-PQCAGRGQRSSGTS------SFTPSPSFSRRPLH-KMNISEASGGNSGADGVHVPTTPRGTQLGRKFPVFKTPVQKQIPGASNKKAVRPKEHPVRDSTRQPRNSSVGRHTEISTTTPIREQEDELDVGITSALMVSPTKAIYGVVTPSIGSEGEVSGEGSS----RPKKRAKKLFS 488
BLAST of mRNA_F-serratus_M_contig927.20652.1 vs. uniprot
Match: A0A6H5KNT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNT9_9PHAE) HSP 1 Score: 299 bits (765), Expect = 8.200e-93 Identity = 194/411 (47.20%), Postives = 257/411 (62.53%), Query Frame = 1
Query: 4 WVVVSAEQAEHAARKLRSETEKNKALQTRLEGHKRDRVLIYDAAMKQAAEREEEGVQDAKRMFERERLVMRVEVDHELLKINDLHEKRCRDYAQMVSDECEEDISKASAELREGWVREKKTIAQLVREGAEEDRQVAVITRAVMEHLQEEKKDQVTALREEICAEVKAEFENREMSLRDALQSEFQADLDGQLLLAEIRHQKEMDQLRTELRGDHAPSAEKAGEAIVVYSRGTKPKQRGRGDHGSXXXXXXXXXSLTPSPSLPRHSLQQKMSFQGARNGGNDSGVAPAPAVRGKSGLVKKLPIFRTPAQKAPASSDIKTTEIALSKPLDYVSQK--------HQDXXXXXXXXEKFDDSN-SITSALTVSPTKTSGIAVTPSMGVESTFIDKASTHEPQRPKKRGKRLFTA 1209
W++VS EQ E A+K+R + EKNKAL+T ++ HKR+RVLIYDAAMKQAA+RE EGV + K++ ER++ +MR EVD E+ KI+DL+++RCRDYA+MVSDEC+ + SKA +LR+ W R+KKTI QLVR EEDRQV+ I RAV+E LQEE+ D++ +LR I ++VK EFE+RE++LRD L+S+FQADLDGQLLLAEIRHQKEM++LR EL G P+ E I+VY+ T + G G S S T SPS R L KM+ A G + +G P + L +K P+F+TP QK K P+ ++K H E D + ITSAL VSPTK VTPS+G E + S+ RPKKR K+LF++
Sbjct: 171 WMIVSKEQVEQTAKKMRDQAEKNKALETTVKSHKRERVLIYDAAMKQAAKRELEGVDEVKQVLERQQGMMRAEVDQEMRKISDLYQERCRDYARMVSDECDGEDSKAVTDLRKDWARQKKTIDQLVRSSREEDRQVSAIARAVVEQLQEERSDEIASLRAAIYSDVKMEFESREVALRDTLESDFQADLDGQLLLAEIRHQKEMNRLRVELAGSEKPTTEAKTSEIIVYNPETL-QCAGSGQRSSGAS------SFTASPSFSRRHLH-KMNIGEASGGNSGAGGVHVPTTPRGTQLGRKFPVFKTPVQKKIPGIGNKKAVRPKGHPVSDSTRKSRNSSAGRHTKISTITPIREHEDYLDVGITSALMVSPTKAIHGVVTPSIGSEGGVSGEGSS----RPKKRAKKLFSS 569
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-27_003990.1 |
| Exons | 6 |
| Model size | 1212 |
| Cds size | 1212 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622932675.819783-CDS-F-serratus_M_contig927:63776..64020 | 1622932675.819783-CDS-F-serratus_M_contig927:63776..64020 | Fucus serratus male | CDS | F-serratus_M_contig927 63777..64020 - |
| 1690964417.0209968-CDS-F-serratus_M_contig927:63776..64020 | 1690964417.0209968-CDS-F-serratus_M_contig927:63776..64020 | Fucus serratus male | CDS | F-serratus_M_contig927 63777..64020 - |
| 1622932675.8348897-CDS-F-serratus_M_contig927:64342..64806 | 1622932675.8348897-CDS-F-serratus_M_contig927:64342..64806 | Fucus serratus male | CDS | F-serratus_M_contig927 64343..64806 - |
| 1690964417.0333352-CDS-F-serratus_M_contig927:64342..64806 | 1690964417.0333352-CDS-F-serratus_M_contig927:64342..64806 | Fucus serratus male | CDS | F-serratus_M_contig927 64343..64806 - |
| 1622932675.8518128-CDS-F-serratus_M_contig927:65067..65163 | 1622932675.8518128-CDS-F-serratus_M_contig927:65067..65163 | Fucus serratus male | CDS | F-serratus_M_contig927 65068..65163 - |
| 1690964417.043292-CDS-F-serratus_M_contig927:65067..65163 | 1690964417.043292-CDS-F-serratus_M_contig927:65067..65163 | Fucus serratus male | CDS | F-serratus_M_contig927 65068..65163 - |
| 1622932675.8688347-CDS-F-serratus_M_contig927:65287..65364 | 1622932675.8688347-CDS-F-serratus_M_contig927:65287..65364 | Fucus serratus male | CDS | F-serratus_M_contig927 65288..65364 - |
| 1690964417.0567553-CDS-F-serratus_M_contig927:65287..65364 | 1690964417.0567553-CDS-F-serratus_M_contig927:65287..65364 | Fucus serratus male | CDS | F-serratus_M_contig927 65288..65364 - |
| 1622932675.885738-CDS-F-serratus_M_contig927:66617..66804 | 1622932675.885738-CDS-F-serratus_M_contig927:66617..66804 | Fucus serratus male | CDS | F-serratus_M_contig927 66618..66804 - |
| 1690964417.0737104-CDS-F-serratus_M_contig927:66617..66804 | 1690964417.0737104-CDS-F-serratus_M_contig927:66617..66804 | Fucus serratus male | CDS | F-serratus_M_contig927 66618..66804 - |
| 1622932675.902187-CDS-F-serratus_M_contig927:67024..67168 | 1622932675.902187-CDS-F-serratus_M_contig927:67024..67168 | Fucus serratus male | CDS | F-serratus_M_contig927 67025..67168 - |
| 1690964417.0831397-CDS-F-serratus_M_contig927:67024..67168 | 1690964417.0831397-CDS-F-serratus_M_contig927:67024..67168 | Fucus serratus male | CDS | F-serratus_M_contig927 67025..67168 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig927.20652.1 >prot_F-serratus_M_contig927.20652.1 ID=prot_F-serratus_M_contig927.20652.1|Name=mRNA_F-serratus_M_contig927.20652.1|organism=Fucus serratus male|type=polypeptide|length=404bp
EWVVVSAEQAEHAARKLRSETEKNKALQTRLEGHKRDRVLIYDAAMKQAA EREEEGVQDAKRMFERERLVMRVEVDHELLKINDLHEKRCRDYAQMVSDE CEEDISKASAELREGWVREKKTIAQLVREGAEEDRQVAVITRAVMEHLQE EKKDQVTALREEICAEVKAEFENREMSLRDALQSEFQADLDGQLLLAEIR HQKEMDQLRTELRGDHAPSAEKAGEAIVVYSRGTKPKQRGRGDHGSDMDP DPDPDSLTPSPSLPRHSLQQKMSFQGARNGGNDSGVAPAPAVRGKSGLVK KLPIFRTPAQKAPASSDIKTTEIALSKPLDYVSQKHQDQDQDQDQNEKFD DSNSITSALTVSPTKTSGIAVTPSMGVESTFIDKASTHEPQRPKKRGKRL FTA* back to topmRNA from alignment at F-serratus_M_contig927:63777..67168- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig927.20652.1 ID=mRNA_F-serratus_M_contig927.20652.1|Name=mRNA_F-serratus_M_contig927.20652.1|organism=Fucus serratus male|type=mRNA|length=3392bp|location=Sequence derived from alignment at F-serratus_M_contig927:63777..67168- (Fucus serratus male) GAATGGGTAGTGGTGTCCGCAGAGCAGGCAGAACACGCAGCAAGAAAGCT
GCGAAGCGAAACTGAGAAGAATAAAGCCTTACAGACCAGGCTGGAGGGAC
ACAAGCGTGATCGGGTCTTGATCTACGACGCCGCTATGAAGCAGGTAATA
GCAATGAGCATGAATTCTTCGGGTAAGACGTCCATCGGGCGGTAGGTGAT
ACTTGTACGGTCTACTGTATCGTTGGACTCCTCTAGTTCCAGCAGCTCTT
GAACCCAAGGGTTTTTGGTCCTCTACCTGCATCGAAGGATAGTGGCTCAA
CAAGTGCGTGAAGAAAAAAGAAGATGCTCTCGCATTTCTAAATATTGAAT
TCCCCTAAACCCAGGCGGCAGAGAGAGAGGAGGAGGGTGTCCAGGACGCC
AAAAGAATGTTCGAACGAGAAAGGCTTGTAATGAGAGTGGAAGTTGATCA
CGAACTCCTCAAGATTAACGACCTCCATGAGAAACGTTGCCGAGACTACG
CGCAAATGGTGTCGGACGAGTGTGAGGAGGACATCTCGAAGGCCTCCGCC
GGTGAGCGACCTGCTGCTATTAATAGTCAACGAAATCCATGTTTGTGCAC
TACGGTAAACTTGTTTGAAGAAAAATACAGAACGCACCTAGACCTTCTGA
GCATCTGTTTGTTATAAAGTTTGTTATAAACACTTCGGCGGCCCGTAAGG
CCAACCTTTATGGGAAACGAAAAAACAGAAACGCAAAATACAGAAATTTG
TCATTTCTGTGGCCAAAAAATCCGTGGGGAAAAACTGTAGTTGGTCGTTT
ATGGGATGAAGGAAAAATACAAAAAAAAACGGGGAGCATATCGATCGGGT
TAACCCCGGCATTTTCGGCCACCCATCACCGCACAAAGACAGGTGGAAGT
ATGTACACATGGCGAGTATGGATCAACCGGGTAAGGTTGCCAGTCCTGCT
CGTGGTCAACTGAACAGGGAAAAATAATATTTCCCTCTCCGTGTTTGTGC
CCGAGAATTTAGTCCGGCGAGACAGGGTCGTTTAGTACTTAATTACGAGT
ACATCGCAAATAGAGTGGGCAGAGCGACATCGTTTCGATGGCGAGCCGTC
GGACGCTCGTGACACGCAGCCCGTCCCTGCTTGATTGATCTCCGGCGCCA
CCCATTCAACCGCCCCCGCCGCCGGCGATCAGCTTGTTCAGGCCCATCAC
CTCAACAGCTTTTATAAATTTCCTCCAGATCTGCTTGCCCGGGCCCATCA
CCTCAACAGATTCTATAAATTTCCTCCAAATCTGCTGCTCCGGCGATCAT
CGCACAACTACTGCTGCTCAGCCCCCATCGTACAACAGCACTCGCGAGCT
CTTCTTTGCCGATATTTGATAGGAGGGATGCTACAGTCCCGACCTCCCAA
TCGTTCTTGGAAGGCGTGAATCATTTCTGCGGCAAACTAAACTTGTCGAG
CCACATACAGAAATGAGCCTCATTTCCGTATGTGGGAAGAGAAAATAACC
TCCCACAGAAATTCGCCATTTCTGTAGGGCTACATTTCTGCGGCACGGGG
CCCATAGCACCACGTTTACAAAAATTTCGCCACAGAAATTTCACATTTCT
GTATTTTCATGTCGTTTCTGTTTCCCATAAAGGTTGGCCTAAAAGTTTCT
TGCAGCAATCCCTGTTCGTTCGTTTTCTGGTGGTGTGTCTTCTTGTGTTC
TCCTTTATTGACGTGCACTTTTTTGGTGATAAGAATTCGGCGAACCATGA
GAGTTTCTTGTAGTGATCCTTGCTGGCGGCCGTGTTCTCCCGTTGCTTCC
GCAGAGCTCAGGGAAGGTTGGGTGAGAGAGAAAAAGACGATCGCCCAGCT
TGTGCGAGAAGGGGCAGAGGAGGATCGACAGGTAAGCGCGATACAAAGTG
TGCCCAATCCTCTGTTTGCCTCGTCTACACACCGAAGCTTAACGCAAGCA
CCTTTAGATGACAAACCTTGTGGGCAATCCCTTTAGTTCGAAGCTGCTGT
AACAGGTGGCGGTGATTACACGGGCGGTGATGGAACACTTGCAAGAAGAG
AAGAAGGATCAAGTGACTGCTCTGAGAGAAGAAATATGCGCTGAAGTCAA
GGTAGTGTCGCACTTCGGCCATGGGGGCTCCCATCGCATGTCGATAGCTG
GGAGACTCCGTCTCATACTGAATGTTAAGATTCGAACGACTAATACTTAT
CAATAGAGCATAAATATACGCTGAAATCAAGGTAATTTCGTACTTCGGTC
ATGAGGGCTCCCATCGCATGTCGATATCAGGAAGACTCCGTTTCCTACTG
AAGGGTTATACTCGAACGACTACTACCCACCGCACGCCGAATTGGCCCGA
TCATCCCCTCAGGCTGAGTTTGAGAATCGCGAGATGTCTCTGCGAGATGC
TCTTCAGAGCGAATTCCAGGCAGACCTGGATGGCCAGCTTCTTTTGGCCG
AGATTCGCCACCAAAAAGAAATGGACCAGCTACGGACGGAGTTACGTGGT
GATCACGCGCCCTCTGCCGAAAAAGCGGGCGAGGCCATTGTTGTGTATAG
CAGAGGGACAAAGCCAAAACAAAGGGGCAGGGGCGACCACGGGAGTGACA
TGGATCCAGATCCAGACCCAGACTCTTTGACTCCATCGCCGTCGCTTCCA
AGGCACTCCCTTCAGCAAAAGATGTCCTTCCAAGGTGCAAGGAATGGTGG
AAACGACAGCGGCGTGGCGCCGGCGCCGGCTGTACGTGGGAAATCTGGGT
TGGTGAAAAAGCTCCCTATCTTCAGGACTCCTGCCCAGAAGGCTCCAGCC
AGTAGCGATATCAAGACGACGGAGATGTAAGGTGTCGCTCGCATGTTGTG
TGTCACGGAGTGTCACAATTTACAGCAATCTGGAACCGATTTTTCGCTCA
CGGTCAACTGGTCTATACGCCTCTGTACCGCATCCTTAACCTTGTACCGT
GGACCGGCACATATTATCACATATCTACGGGACTGTTACCTCTTGACAGC
TCATTCCACCCGCTGACCTCCATGCATCAAATCGTAATCCGCCGAATTCA
TTGTCCAGGGAACCAGGTCGATCCAACGAACCCACCGCGCAGCTTCGGCC
TCGGATCAAACGTTCCTCCCGATCCCTCAAGACTGGCAATATAGCGAGCG
CTTTGTCCAAGCCGCTTGATTACGTATCTCAAAAACATCAAGATCAAGAT
CAAGATCAAGATCAAAATGAAAAGTTTGATGACAGTAACAGTATTACGAG
TGCACTCACGGTCTCACCAACCAAAACCTCTGGGATAGCCGTTACGCCTT
CTATGGGCGTTGAGAGCACCTTCATTGACAAAGCGTCGACTCATGAGCCG
CAAAGACCAAAGAAGCGAGGAAAGCGCCTTTTTACGGCATAA back to topCoding sequence (CDS) from alignment at F-serratus_M_contig927:63777..67168- >mRNA_F-serratus_M_contig927.20652.1 ID=mRNA_F-serratus_M_contig927.20652.1|Name=mRNA_F-serratus_M_contig927.20652.1|organism=Fucus serratus male|type=CDS|length=2424bp|location=Sequence derived from alignment at F-serratus_M_contig927:63777..67168- (Fucus serratus male) GAATGGGTAGTGGTGTCCGCAGAGCAGGCAGAACACGCAGCAAGAAAGCT GCGAAGCGAAACTGAGAAGAATAAAGCCTTACAGACCAGGCTGGAGGGAC ACAAGCGTGATCGGGTCTTGATCTACGACGCCGCTATGAAGCAGGAATGG GTAGTGGTGTCCGCAGAGCAGGCAGAACACGCAGCAAGAAAGCTGCGAAG CGAAACTGAGAAGAATAAAGCCTTACAGACCAGGCTGGAGGGACACAAGC GTGATCGGGTCTTGATCTACGACGCCGCTATGAAGCAGGCGGCAGAGAGA GAGGAGGAGGGTGTCCAGGACGCCAAAAGAATGTTCGAACGAGAAAGGCT TGTAATGAGAGTGGAAGTTGATCACGAACTCCTCAAGATTAACGACCTCC ATGAGAAACGTTGCCGAGACTACGCGCAAATGGTGTCGGACGAGTGTGAG GAGGACATCTCGAAGGCCTCCGCCGGCGGCAGAGAGAGAGGAGGAGGGTG TCCAGGACGCCAAAAGAATGTTCGAACGAGAAAGGCTTGTAATGAGAGTG GAAGTTGATCACGAACTCCTCAAGATTAACGACCTCCATGAGAAACGTTG CCGAGACTACGCGCAAATGGTGTCGGACGAGTGTGAGGAGGACATCTCGA AGGCCTCCGCCGAGCTCAGGGAAGGTTGGGTGAGAGAGAAAAAGACGATC GCCCAGCTTGTGCGAGAAGGGGCAGAGGAGGATCGACAGAGCTCAGGGAA GGTTGGGTGAGAGAGAAAAAGACGATCGCCCAGCTTGTGCGAGAAGGGGC AGAGGAGGATCGACAGGTGGCGGTGATTACACGGGCGGTGATGGAACACT TGCAAGAAGAGAAGAAGGATCAAGTGACTGCTCTGAGAGAAGAAATATGC GCTGAAGTCAAGGTGGCGGTGATTACACGGGCGGTGATGGAACACTTGCA AGAAGAGAAGAAGGATCAAGTGACTGCTCTGAGAGAAGAAATATGCGCTG AAGTCAAGGCTGAGTTTGAGAATCGCGAGATGTCTCTGCGAGATGCTCTT CAGAGCGAATTCCAGGCAGACCTGGATGGCCAGCTTCTTTTGGCCGAGAT TCGCCACCAAAAAGAAATGGACCAGCTACGGACGGAGTTACGTGGTGATC ACGCGCCCTCTGCCGAAAAAGCGGGCGAGGCCATTGTTGTGTATAGCAGA GGGACAAAGCCAAAACAAAGGGGCAGGGGCGACCACGGGAGTGACATGGA TCCAGATCCAGACCCAGACTCTTTGACTCCATCGCCGTCGCTTCCAAGGC ACTCCCTTCAGCAAAAGATGTCCTTCCAAGGTGCAAGGAATGGTGGAAAC GACAGCGGCGTGGCGCCGGCGCCGGCTGTACGTGGGAAATCTGGGTTGGT GAAAAAGCTCCCTATCTTCAGGACTCCTGCCCAGAAGGCTCCAGCCAGTA GCGATATCAAGACGACGGAGATGCTGAGTTTGAGAATCGCGAGATGTCTC TGCGAGATGCTCTTCAGAGCGAATTCCAGGCAGACCTGGATGGCCAGCTT CTTTTGGCCGAGATTCGCCACCAAAAAGAAATGGACCAGCTACGGACGGA GTTACGTGGTGATCACGCGCCCTCTGCCGAAAAAGCGGGCGAGGCCATTG TTGTGTATAGCAGAGGGACAAAGCCAAAACAAAGGGGCAGGGGCGACCAC GGGAGTGACATGGATCCAGATCCAGACCCAGACTCTTTGACTCCATCGCC GTCGCTTCCAAGGCACTCCCTTCAGCAAAAGATGTCCTTCCAAGGTGCAA GGAATGGTGGAAACGACAGCGGCGTGGCGCCGGCGCCGGCTGTACGTGGG AAATCTGGGTTGGTGAAAAAGCTCCCTATCTTCAGGACTCCTGCCCAGAA GGCTCCAGCCAGTAGCGATATCAAGACGACGGAGATCGCTTTGTCCAAGC CGCTTGATTACGTATCTCAAAAACATCAAGATCAAGATCAAGATCAAGAT CAAAATGAAAAGTTTGATGACAGTAACAGTATTACGAGTGCACTCACGGT CTCACCAACCAAAACCTCTGGGATAGCCGTTACGCCTTCTATGGGCGTTG AGAGCACCTTCATTGACAAAGCGTCGACTCATGAGCCGCAAAGACCAAAG AAGCGAGGAAAGCGCCTTTTTACGGCATAACGCTTTGTCCAAGCCGCTTG ATTACGTATCTCAAAAACATCAAGATCAAGATCAAGATCAAGATCAAAAT GAAAAGTTTGATGACAGTAACAGTATTACGAGTGCACTCACGGTCTCACC AACCAAAACCTCTGGGATAGCCGTTACGCCTTCTATGGGCGTTGAGAGCA CCTTCATTGACAAAGCGTCGACTCATGAGCCGCAAAGACCAAAGAAGCGA GGAAAGCGCCTTTTTACGGCATAA back to top
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