mRNA_F-serratus_M_contig924.20645.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig924.20645.1
Unique NamemRNA_F-serratus_M_contig924.20645.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig924.20645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig924contigF-serratus_M_contig924:308312..308680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932673.8886082-UTR-F-serratus_M_contig924:308311..3083471622932673.8886082-UTR-F-serratus_M_contig924:308311..308347Fucus serratus maleUTRF-serratus_M_contig924 308312..308347 +
1690964416.0272331-UTR-F-serratus_M_contig924:308311..3083471690964416.0272331-UTR-F-serratus_M_contig924:308311..308347Fucus serratus maleUTRF-serratus_M_contig924 308312..308347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932673.9051716-CDS-F-serratus_M_contig924:308347..3086801622932673.9051716-CDS-F-serratus_M_contig924:308347..308680Fucus serratus maleCDSF-serratus_M_contig924 308348..308680 +
1690964416.0395422-CDS-F-serratus_M_contig924:308347..3086801690964416.0395422-CDS-F-serratus_M_contig924:308347..308680Fucus serratus maleCDSF-serratus_M_contig924 308348..308680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig924.20645.1prot_F-serratus_M_contig924.20645.1Fucus serratus malepolypeptideF-serratus_M_contig924 308348..308680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig924.20645.1

>prot_F-serratus_M_contig924.20645.1 ID=prot_F-serratus_M_contig924.20645.1|Name=mRNA_F-serratus_M_contig924.20645.1|organism=Fucus serratus male|type=polypeptide|length=111bp
MDGIGSAASKDYACAKLDDTKKNKRCEKHAPDVKNKKSAHAACTKLTLLG
MACTRTPENCGQHAKDSKVNVKNKSLSRGSCGKLSSFGVTEAKTSEYCTQ
HARDGTVRVSN
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mRNA from alignment at F-serratus_M_contig924:308312..308680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig924.20645.1 ID=mRNA_F-serratus_M_contig924.20645.1|Name=mRNA_F-serratus_M_contig924.20645.1|organism=Fucus serratus male|type=mRNA|length=369bp|location=Sequence derived from alignment at F-serratus_M_contig924:308312..308680+ (Fucus serratus male)
CGCTGATACGACACTGACAGCTTCAAATACCAACCTATGGACGGTATTGG
AAGCGCCGCTAGTAAAGATTACGCCTGTGCAAAGTTAGACGACACGAAGA
AAAATAAACGTTGTGAAAAGCACGCTCCGGACGTCAAGAACAAAAAATCT
GCCCATGCAGCCTGCACGAAGCTAACCTTGCTTGGCATGGCGTGCACGAG
AACGCCGGAGAACTGCGGGCAGCATGCCAAGGACAGTAAAGTCAACGTTA
AAAACAAGAGTCTTTCCCGTGGAAGCTGCGGTAAGTTATCGTCGTTCGGT
GTGACCGAAGCGAAAACATCGGAATACTGCACTCAACATGCCCGAGACGG
GACAGTCCGCGTCTCTAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig924:308312..308680+

>mRNA_F-serratus_M_contig924.20645.1 ID=mRNA_F-serratus_M_contig924.20645.1|Name=mRNA_F-serratus_M_contig924.20645.1|organism=Fucus serratus male|type=CDS|length=666bp|location=Sequence derived from alignment at F-serratus_M_contig924:308312..308680+ (Fucus serratus male)
ATGGACGGTATTGGAAGCGCCGCTAGTAAAGATTACGCCTGTGCAAAGTT
AGACGACACGAAGAAAAATAAACGTTGTGAAAAGCACGCTCCGGACGTCA
AGAACAAAAAATCTGCCCATGCAGCCTGCACGAAGCTAACCTTGCTTGGC
ATGGCGTGCACGAGAACGCCGGAGAACTGCGGGCAGCATGCCAAGGACAG
TAAAGTCAACGTTAAAAACAAGAGTCTTTCCCGTGGAAGCTGCGGTAAGT
TATCGTCGTTCGGTGTGACCGAAGCGAAAACATCGGAATACTGCACTCAA
CATGCCCGAGACGGGACAGTCCGCGTCTCTAACATGGACGGTATTGGAAG
CGCCGCTAGTAAAGATTACGCCTGTGCAAAGTTAGACGACACGAAGAAAA
ATAAACGTTGTGAAAAGCACGCTCCGGACGTCAAGAACAAAAAATCTGCC
CATGCAGCCTGCACGAAGCTAACCTTGCTTGGCATGGCGTGCACGAGAAC
GCCGGAGAACTGCGGGCAGCATGCCAAGGACAGTAAAGTCAACGTTAAAA
ACAAGAGTCTTTCCCGTGGAAGCTGCGGTAAGTTATCGTCGTTCGGTGTG
ACCGAAGCGAAAACATCGGAATACTGCACTCAACATGCCCGAGACGGGAC
AGTCCGCGTCTCTAAC
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