mRNA_F-serratus_M_contig923.20634.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig923.20634.1
Unique NamemRNA_F-serratus_M_contig923.20634.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig923.20634.1 vs. uniprot
Match: D7G1W1_ECTSI (Carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1W1_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.320e-27
Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 1 
Query:  154 VFVDMSPPDTSQLV---EEQRRVLLLSERRSGAGTGGKVFNAYPNIFYVGDPCRMGGGPEALFGGVCSMMVSRLLAYQPTTDDVRNLYSFSFIVEQ 432
            V  D + PD SQL    ++QRRVLLLSE+RSG    G V NA   +FYV DPCRMGGGPEAL  G CS+ V+RLLA QPTT+D+RNL+SFS+IVE+
Sbjct:  180 VLQDDTSPDLSQLATTGKKQRRVLLLSEKRSGGHAVGGVLNADTRVFYVADPCRMGGGPEALDAGACSLAVTRLLACQPTTNDIRNLFSFSYIVER 275
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BLAST of mRNA_F-serratus_M_contig923.20634.1 vs. uniprot
Match: A0A835ZGF5_9STRA (HEAT repeat-containing protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGF5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.200e-10
Identity = 48/167 (28.74%), Postives = 81/167 (48.50%), Query Frame = 1 
Query:    4 GLFLLNPRASEMVAADMGHFRNTI----EQLENVLKESMGKHGKYISIVMRQLGVFVDMSPP---------DTSQL------------------VEEQRRVLLLSERRSGAGTGGKVFNAYPNIFYVGDPCRMGG-GPEALFGGVCSMMVSRLLAYQPTTDDVRNLY 408
            G+  L PR  EM+ AD+   R T+    E++E + K    +    I+ + +    F ++S            T ++                  V EQ+R+L++SE RSG+   G++FN+   +FY+ +PC+ GG G  AL+   C  ++ RLL  +PT  DV N++
Sbjct:  152 GMKSLTPRTFEMLTADISDLRKTVVALKEEMEGIRKSPPAQANSNIAALAKP--AFEELSGRYQKLQQDMMSTKEMLMATAEALVAGRGRGAGAVAEQKRLLIVSEPRSGSTQFGELFNSNEQLFYLFEPCKGGGDGGTALYDEACGYLLQRLLECEPTVKDVDNMF 316
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig923.20634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1W1_ECTSI1.320e-2762.50Carbohydrate (N-acetylglucosamine 6-O) sulfotransf... [more]
A0A835ZGF5_9STRA1.200e-1028.74HEAT repeat-containing protein 1 n=1 Tax=Tribonema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig923contigF-serratus_M_contig923:139999..141417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-07_003910.1
Exons4
Model size496
Cds size495
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig923.20634.1prot_F-serratus_M_contig923.20634.1Fucus serratus malepolypeptideF-serratus_M_contig923 139999..141416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932672.9721475-CDS-F-serratus_M_contig923:139998..1400701622932672.9721475-CDS-F-serratus_M_contig923:139998..140070Fucus serratus maleCDSF-serratus_M_contig923 139999..140070 +
1690964415.6667438-CDS-F-serratus_M_contig923:139998..1400701690964415.6667438-CDS-F-serratus_M_contig923:139998..140070Fucus serratus maleCDSF-serratus_M_contig923 139999..140070 +
1622932672.9919794-CDS-F-serratus_M_contig923:140223..1403041622932672.9919794-CDS-F-serratus_M_contig923:140223..140304Fucus serratus maleCDSF-serratus_M_contig923 140224..140304 +
1690964415.6884036-CDS-F-serratus_M_contig923:140223..1403041690964415.6884036-CDS-F-serratus_M_contig923:140223..140304Fucus serratus maleCDSF-serratus_M_contig923 140224..140304 +
1622932673.0137749-CDS-F-serratus_M_contig923:140865..1411441622932673.0137749-CDS-F-serratus_M_contig923:140865..141144Fucus serratus maleCDSF-serratus_M_contig923 140866..141144 +
1690964415.7049522-CDS-F-serratus_M_contig923:140865..1411441690964415.7049522-CDS-F-serratus_M_contig923:140865..141144Fucus serratus maleCDSF-serratus_M_contig923 140866..141144 +
1622932673.0343235-CDS-F-serratus_M_contig923:141353..1414161622932673.0343235-CDS-F-serratus_M_contig923:141353..141416Fucus serratus maleCDSF-serratus_M_contig923 141354..141416 +
1690964415.7223566-CDS-F-serratus_M_contig923:141353..1414161690964415.7223566-CDS-F-serratus_M_contig923:141353..141416Fucus serratus maleCDSF-serratus_M_contig923 141354..141416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig923.20634.1

>prot_F-serratus_M_contig923.20634.1 ID=prot_F-serratus_M_contig923.20634.1|Name=mRNA_F-serratus_M_contig923.20634.1|organism=Fucus serratus male|type=polypeptide|length=165bp
LGLFLLNPRASEMVAADMGHFRNTIEQLENVLKESMGKHGKYISIVMRQL
GVFVDMSPPDTSQLVEEQRRVLLLSERRSGAGTGGKVFNAYPNIFYVGDP
CRMGGGPEALFGGVCSMMVSRLLAYQPTTDDVRNLYSFSFIVEQVVPRVS
RPELSVTFLLFVRDP
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mRNA from alignment at F-serratus_M_contig923:139999..141417+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig923.20634.1 ID=mRNA_F-serratus_M_contig923.20634.1|Name=mRNA_F-serratus_M_contig923.20634.1|organism=Fucus serratus male|type=mRNA|length=1419bp|location=Sequence derived from alignment at F-serratus_M_contig923:139999..141417+ (Fucus serratus male)
CTAGGCTTGTTCCTTTTGAATCCACGTGCGTCAGAAATGGTCGCTGCGGA
CATGGGTCATTTCAGGAACACGGTGAGCCTTTTCTCTCGTCCTGTTACAA
AGCTCAGCTCCATACATTGTTTTAGAATTCATGTCCACGGATGTTGTAGC
GGCGATCAAATGAATCACGTTTTTCCAGGGGTGGTCTCAAACCCCCACAC
GCCCTGCCTTTCCGGCCGTGTGCAGATAGAGCAACTCGAGAACGTTCTCA
AGGAAAGCATGGGGAAACACGGGAAATACATATCCATCGTGATGCGCCAG
CTCGGGGTAAGATCGTTTGTTTTTTTTTTAACTGAAAATGTCACACCGAG
CGAGAAAGTGACCTGACCGTGATGTGTCGACGACTGCTTACGGAATTTAA
ATGTTTTTCGGTAGGAGGTGACCCCGCGCGCAGGTTATCATTGTGCCATC
AATCGTGAACTTTCCTGCTGTCCCAAAAAATGGCGTTTGATTTCGCTGTG
CGTCCAAGAAACATGTAGTCAAAATCAGCTCCTGGAGAAGAGACTGTAGC
GCGGCACAAAAATAGATTGTCCGAAAACTGCAAAGTCTGAGCTATATATC
GCTTGTTTCCTCGCCCCGCTTGATTTTTTCCCCTTTTCTCCAGCTCTCTA
TTTTTTTTGTTTGTTTTTTCCCTTTGTTTGAAGCCGGTAACCACTCGATA
CGGAGGAAATCGAAAGCGGCGCAAAACTGCTAGTAGGGAGCACAGATACG
ATACAAAAAAAAACGCGCGACGTGGCAGGCATCAACCCATGCATCTCGTG
GTCACTTCCCCTCCATCCGGCGTTGCATGTTTCAAATTAGGTTCCGTTTT
ATTCTCTCTACACGCAGGTTTTCGTGGACATGAGCCCTCCCGACACCTCA
CAATTGGTTGAGGAACAGCGGCGCGTGTTGCTCCTCTCTGAGCGGCGGTC
GGGCGCGGGTACCGGAGGAAAGGTCTTCAACGCATACCCAAACATCTTCT
ACGTGGGTGATCCGTGCCGCATGGGGGGTGGCCCCGAGGCGCTGTTCGGT
GGCGTTTGCTCAATGATGGTATCGAGGCTTCTCGCCTACCAGCCCACCAC
CGACGACGTCCGCAACCTGTACTCGTTTTCGTTCATCGTGGAGCAGGTGT
GAACCCAAATCGTGTATTTTTCTCTCGATAACCCCCCCACTCACTGAACA
GGTCCCACCGACACCAGGAGGGGAGCACCTCTCTCTCACGAGCGCAGTTT
CGACTACGAGGCATGGACGTGACATTCCTTACCTCAAAACGCTTTGTTTT
GACCGTCAGCACTTCTTATTGATCTACTTACCGATCCACGCCATGCGATG
AACAGGTGGTGCCTAGGGTGTCGAGGCCTGAGCTCAGCGTTACGTTTTTG
CTCTTCGTCCGCGACCCAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig923:139999..141417+

>mRNA_F-serratus_M_contig923.20634.1 ID=mRNA_F-serratus_M_contig923.20634.1|Name=mRNA_F-serratus_M_contig923.20634.1|organism=Fucus serratus male|type=CDS|length=990bp|location=Sequence derived from alignment at F-serratus_M_contig923:139999..141417+ (Fucus serratus male)
CTAGGCTTGTTCCTTTTGAATCCACGTGCGTCAGAAATGGTCGCTGCGGA
CATGGGTCATTTCAGGAACACGCTAGGCTTGTTCCTTTTGAATCCACGTG
CGTCAGAAATGGTCGCTGCGGACATGGGTCATTTCAGGAACACGATAGAG
CAACTCGAGAACGTTCTCAAGGAAAGCATGGGGAAACACGGGAAATACAT
ATCCATCGTGATGCGCCAGCTCGGGATAGAGCAACTCGAGAACGTTCTCA
AGGAAAGCATGGGGAAACACGGGAAATACATATCCATCGTGATGCGCCAG
CTCGGGGTTTTCGTGGACATGAGCCCTCCCGACACCTCACAATTGGTTGA
GGAACAGCGGCGCGTGTTGCTCCTCTCTGAGCGGCGGTCGGGCGCGGGTA
CCGGAGGAAAGGTCTTCAACGCATACCCAAACATCTTCTACGTGGGTGAT
CCGTGCCGCATGGGGGGTGGCCCCGAGGCGCTGTTCGGTGGCGTTTGCTC
AATGATGGTATCGAGGCTTCTCGCCTACCAGCCCACCACCGACGACGTCC
GCAACCTGTACTCGTTTTCGTTCATCGTGGAGCAGGTTTTCGTGGACATG
AGCCCTCCCGACACCTCACAATTGGTTGAGGAACAGCGGCGCGTGTTGCT
CCTCTCTGAGCGGCGGTCGGGCGCGGGTACCGGAGGAAAGGTCTTCAACG
CATACCCAAACATCTTCTACGTGGGTGATCCGTGCCGCATGGGGGGTGGC
CCCGAGGCGCTGTTCGGTGGCGTTTGCTCAATGATGGTATCGAGGCTTCT
CGCCTACCAGCCCACCACCGACGACGTCCGCAACCTGTACTCGTTTTCGT
TCATCGTGGAGCAGGTGGTGCCTAGGGTGTCGAGGCCTGAGCTCAGCGTT
ACGTTTTTGCTCTTCGTCCGCGACCCAGTGGTGCCTAGGGTGTCGAGGCC
TGAGCTCAGCGTTACGTTTTTGCTCTTCGTCCGCGACCCA
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