mRNA_F-serratus_M_contig923.20631.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig923.20631.1
Unique NamemRNA_F-serratus_M_contig923.20631.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig923.20631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig923contigF-serratus_M_contig923:118069..123066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932672.6466515-CDS-F-serratus_M_contig923:118068..1183091622932672.6466515-CDS-F-serratus_M_contig923:118068..118309Fucus serratus maleCDSF-serratus_M_contig923 118069..118309 +
1690964415.5621638-CDS-F-serratus_M_contig923:118068..1183091690964415.5621638-CDS-F-serratus_M_contig923:118068..118309Fucus serratus maleCDSF-serratus_M_contig923 118069..118309 +
1622932672.6616817-CDS-F-serratus_M_contig923:123028..1230661622932672.6616817-CDS-F-serratus_M_contig923:123028..123066Fucus serratus maleCDSF-serratus_M_contig923 123029..123066 +
1690964415.5721703-CDS-F-serratus_M_contig923:123028..1230661690964415.5721703-CDS-F-serratus_M_contig923:123028..123066Fucus serratus maleCDSF-serratus_M_contig923 123029..123066 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig923.20631.1prot_F-serratus_M_contig923.20631.1Fucus serratus malepolypeptideF-serratus_M_contig923 118069..123066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig923.20631.1

>prot_F-serratus_M_contig923.20631.1 ID=prot_F-serratus_M_contig923.20631.1|Name=mRNA_F-serratus_M_contig923.20631.1|organism=Fucus serratus male|type=polypeptide|length=93bp
RISLAHVASVSKTFVCRISAIDLVMPVGHEKRTQCLWGKELRSVAAQQTG
AKAEAQAAIAWVRGISGDSTELDGAWRPGRGVDLAREDDAPRR
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mRNA from alignment at F-serratus_M_contig923:118069..123066+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig923.20631.1 ID=mRNA_F-serratus_M_contig923.20631.1|Name=mRNA_F-serratus_M_contig923.20631.1|organism=Fucus serratus male|type=mRNA|length=4998bp|location=Sequence derived from alignment at F-serratus_M_contig923:118069..123066+ (Fucus serratus male)
AGAATCAGTCTCGCACACGTAGCATCtGTGAGCAAAACGTTTGTCTGTCG
AATTTCCGCAATAGATTTGGTGATGCCGGTTGGCCACGAGAAGCGTACCC
AATGTTTGTGGGGAAAGGAGCTCAGATCGGTGGCGGCGCAGCAGACAGGA
GCGAAGGCGGAGGCGCAGGCAGCCATAGCCTGGGTCAGAGGCATAAGCGG
CGACTCTACGGAGCTTGATGGCGCTTGGCGCCCTGGGAGGGGTACGTCCT
GGGCCATCTGGCGAGAAGAGCTTGCTGTTTTTGAGATTCTACAGCCTAGG
GGAGACTCCATGAGATCATTGGCGAGTAGGTCGAACGGACATCTCACAAG
GACCATTTCGACAACTTGATTGTACGCTCTCTCTGTTGTGTTAGATGAAA
ACGAAACAATAAAAACTCGCCGAGGGGTGTGGAGAACGAGCGGGCTAATG
CGGGACGGTACAGTCGAACCTGTCTCGCGAGATTGAGTTCTGACGCGCGA
ACGAAGGCAGGGGAAAATTATTCGCGATCTCGGCTACCATATTAGGTATG
TAGCTGACGCGGAACGGGACAGCTGAATTGTATCGCGAGATCAAGTTCCC
AGGCGCGAACAGAAATAAGGAAAATCAATTTTCAATTTTCAGGCAGAGAA
GGAGTTTTGGATTTTCTTTCCTAATCTGCAATACTAGCTCAGCTGGTAAC
CTCGTAACCTTCTGACGCGTTGGGACGTAAGTTCGAATCCCGGTAAGGCC
AACCTTTATGGGAAACGAAAAAACAGAAACGCAAAATACAGAAATTTGTC
ATTTCTGTGGCCAAAAAATCCGTGGGGAAAAACTATAGTTGGTCGTTTAT
GAGATAAAGGAAAAATAAAAATAAAAATGGTGAGCATATCGGGTTAACCC
CGGCATTTTCGGCCACCCATCACCGCACAAAGACAGGTGCAAGTATGTAC
ACATGGCGAGTATGGATCAACCGGGTAAGGTTACCAGTCCTGCTCGTGGT
CAACTGAACAGGGAAAAATAATATTTCCCTCTCCGCGTTTGTGCCCGAGA
ATTTAGTCCGGCGAGACAGGGTCGTTTAGTACTTAATTACGAGTACCTCG
CAAATAGAGTGGGCAGAGCGACATCGTTTCGATGGCGAGCCGTCGGACGC
TCGTGACACGCAGCCCGTCCCTGCTTGATTGATCTCCGGCGTCACCCATT
CAACCGGGGCGATCAGCTTGTCCAGGCCCATCACCTCAACAGCTTTTATA
AATTTCCTCCAGATCTGCTTGCCCGGGCCCATCACCTCAACAGATTCTAT
AAATTTCCTCCAAATCTGCTGCTCCGGCGATCATCGCACAAGGTCTAGGT
GCGTTCTGTATTTTCTTCAAACTACTATACTGCTGCTCAGCACCCATCGT
ACAACAGCACTCGCGAGCTCTTTTGGAGGGATGCTACAGTCCCGACCTTC
CAATCGTTCTTGGAAGGCGTGAATCATTTCTGCGGCAAACTAAACTTGTC
GAGCCACATACAGAAATGAGAAATGAGCCTCATTTCTGTATGTGGGAAGA
GAAAAATAACCTCCCACAGAAATTCGCCATTTCTGTAGGGCTACATTTCT
GCGGCACGGGGCCCATAGCGCCACGTTTACAAAAATTTCGCCACAGAAAT
TTCACATTTCTGTATTTTCATGTCGTTTCTGTTTCCCATAAAGGTGGGAT
TTTTCCTTACTAGAAAATAAAATAAAATAAATAAATAAATGCGCAACAAA
GAACGATTAAATCGTTCGTACACAAAATTCGACTTCACGTTCGACGAGGG
AAAGGACGGCTGAGACCTTCTCGCGAGAAAAATAAAGGCATGCACCGCAG
AAGGAAGGTGGATGAAAAATCCTGATAGATCTTCCTCCTGTGTGACCCCG
GCTGTTACATCCAACGAACTTGATGTCCATAATAAATGGGAAGAAAACAA
CGCACAATCAGATAATTTCTGTAGAGCACATGCCCACTTGATAACAATGG
TGGGTGTGGGGAAATAGAGGCGCGCATTATTAATTGGTCATAGTCCATGG
TGAAACCTGAAAAGGCGGCACCCGTTACTGAAACTATTTTGATGACTGCT
GGCCCTGTGCCGGCGGACTCTCGACAGTAAACGCAGTCGGTACTCATTTG
CATCACCTGATGAACTCGGGACTGACCCGATGTCGGATGGCGGTATAAAT
AAATAGAACGCCGCCGCGGAAATCGGGAGGAATCCCGTAAGTAAGCACCT
GATTCAGCCTGAATGTGGAGAATGAGCAGGCTGACGCGGGGCGGGACGGC
CGAACCCGTCTCGCGAGTCCAAATTGTCAGGCGCGAACGGGGACAGGGAA
ATACTCATTTTGCCTGATCAGCCGTCCACGAGCAGGATTGGCAACCTTAT
CCGATTGATCCATAGAATTTCATTTTCCCTGTTCAGCTGACCACGAGCAG
GACTGACAACCTTACCCAGTTGATCCTTACTCTACTACAGAAATAAGTAA
TAATATACATGCATGCATGTCGCCGGTAATTTCAACATGCCCACTTCATA
CCAACAGTGCGGGTTGGAAAGAGAGGCGCATATTTATTGGTCCATGGTGA
CCTGCCAAGGCAGCACTCGTTCGGAACTACCTTGAGTTTTACTGACCCTG
TGCCGGCGGATCCACGGCAGTGAATGCCATCGGTACGCAATTGCGTAACC
CGATAAACCCTGGACTGACCCGAAGGCGAATGGAGGTTTTGCGTAAATAA
ATGGACGCCGCCGGGGAACTCGGGAGGGATCCCATAAGTGAGCACCAGAT
TCAGCCTGAGTATGGAAATGAGCACGCTAACGCGGGACGGAACTGCCGAA
CCTGTCTCGCGAGACCAGATTCTCAGGCGCGAACGCGGACAGGAAAATAT
TAATTTTTGTGTCGCATATATGTTCTGCTTACCGATACAATACAATAATA
CAATACAATATCATAGTGCCTCACTGTGTGTAGGAAAAGAGGGACACGCA
AAAATTGGTCCATGGGGTTTTCTGAATATGCCGCCCCGTTTACCCGAGCT
GCCTTGAAGACTTTACCGGCCCTGTCCCCGCGAACTCTTGGCGGTAAACG
CCATCGGTACGCAATCGCGTGGCCCTATAAATCTGGACTGATCTGATGGT
GGTTGATGGTATACTATTAGATGGACGCCGTCGCGGAAAACGAGGCCAGT
GAGTGGAGCCTGTGAGTAAGCGCTAGATTTATAGACATACATATACATAC
ATACATACATACATACATACATACATACAGAGAAAAAGATGTAGAATAGA
AAGGGTTGGCCCAGTATCTGCCAATTTATACAGGTAGTCTGGGCTCAATG
AACGGTACATACATACATAGTTTCATGGGAGGATCAATACAGTGGCATAG
AATGACTAGGATGACAGGGCCGGATACATGTGCAATTTAATAAACATACA
TACATACATACATACATACATACATACATACATACATACATACATACATA
CATACATACAATAGTGGCATAGAATAACTAGGATGACACGGATACATGCA
TACATACATACATACATACATACGTACATACATACATACATACATTTTCG
TAATAAGTTTCATTGATCCCCCTTGGGAGGATCAATACGAGTGGCATAGA
ATGACTAGGATGACAGGGCCGGATTGCGCGGTTATGTGCAATTTTTAATA
AATACATACATACATACATACATACATACATACATACATACATACATATA
CATGTACCATGCAGTAGACATCCGTTCACACATATACACGCACAAAGGGA
CCAAACAGTAGTTGATGTGGCACGTTCACACCTTCACCTCTTTCTCACTT
CACCGACGACGTGCCGGCTATCAGATAAATATATTGAAGACCTGACTGTG
GCCCCTTCAAGATTCTGGGGTAGACCAACCCCTATCTGCTCCGTCCACCG
CCAACAGCATTCTAACCCAACCCTCCCCGAGACATCCGACTCAAGGGTGT
ATTAGGACCATATGGCAATAAGTAAACGTGTAAAGGATAACACTGCGTCT
CTCCCTGATATTATAATATTGACTCTATGCGACGACCATCGTTGGGAAAC
GTTAAACCTAAAACTTAAACCCCATGTGGAGGTTTTTGTTGAAACAGCTA
TAAATGCTAAATGTAATGATGTTCCCAACTACTTGGTATTAATAAAGTTT
TTTTGACATATTCCCATCCCCCGGACCGTGTGGATGCTCTGAAAGTTGAA
GCTTCACATGCGCTTAGATTATTTCGATAAACACATACCCTTCCTGATTG
TACAGTACAGCACAGACTGTAGCCGGTACTGGTACGAAATAATATTGATG
TACGCATACGAGTTACGGGTACCGTGTTTCCTGAAAATACACCTCACATC
TGAAGCTCGCTGCTACGCCTTGACTGTCCACGTGAAACGTCGTTGATGAA
AAGCTAGAGAACTCTTCCGGCAGGATAGTTGGGTTATAGCGAAATAACTG
CTGTGGCCGACGCCTGATAGAATCAGGCTGCATCCTGGTGTTGACTACTT
TTTTTACCAGATCAGCGAACTCTTGAAAATCTCAACACGTACCTGTGTTT
ACCGTTGTTTGTTGCTCTGTGTCGTGTTAGCACATATACCGCGTTAAGGC
CAGCATTTGACTAGCGCCACACCCGATATCCACCAAGTAACAATCGAGCG
AGCGCCCAGCGGAAGTATGTCAGGTAGAAAAAAAATGTACAAGGTTGGGA
GGCATTGAAAAAAAAAGCACTCTGCTGCAGGCAGAAATATGACCCCTAAA
ATCAGGAACCACCGCTCCCCGCCATATTTTGCGGATGCACACATCGTGTT
TCAACTCGTGCTAGCTTTCTAGAGTTAGCTTGTCCTAGGTATCCCTAAGT
TCCACACGGGTTAACGTTTCTCTCGTCCCTCGATACTCTTGTCACATACC
ACCGATCCAGGGGTCGACTTGGCGCGGGAAGACGATGCTCCACGCCGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig923:118069..123066+

>mRNA_F-serratus_M_contig923.20631.1 ID=mRNA_F-serratus_M_contig923.20631.1|Name=mRNA_F-serratus_M_contig923.20631.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig923:118069..123066+ (Fucus serratus male)
AGAATCAGTCTCGCACACGTAGCATCtGTGAGCAAAACGTTTGTCTGTCG
AATTTCCGCAATAGATTTGGTGATGCCGGTTGGCCACGAGAAGCGTACCC
AATGTTTGTGGGGAAAGGAGCTCAGATCGGTGGCGGCGCAGCAGACAGGA
GCGAAGGCGGAGGCGCAGGCAGCCATAGCCTGGGTCAGAGGCATAAGCGG
CGACTCTACGGAGCTTGATGGCGCTTGGCGCCCTGGGAGGGAGAATCAGT
CTCGCACACGTAGCATCtGTGAGCAAAACGTTTGTCTGTCGAATTTCCGC
AATAGATTTGGTGATGCCGGTTGGCCACGAGAAGCGTACCCAATGTTTGT
GGGGAAAGGAGCTCAGATCGGTGGCGGCGCAGCAGACAGGAGCGAAGGCG
GAGGCGCAGGCAGCCATAGCCTGGGTCAGAGGCATAAGCGGCGACTCTAC
GGAGCTTGATGGCGCTTGGCGCCCTGGGAGGGGGGTCGACTTGGCGCGGG
AAGACGATGCTCCACGCCGAGGGTCGACTTGGCGCGGGAAGACGATGCTC
CACGCCGA
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