mRNA_F-serratus_M_contig907.20484.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig907.20484.1
Unique NamemRNA_F-serratus_M_contig907.20484.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig907.20484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig907contigF-serratus_M_contig907:132954..133419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size467
Cds size447
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932642.2212777-UTR-F-serratus_M_contig907:132953..1329721622932642.2212777-UTR-F-serratus_M_contig907:132953..132972Fucus serratus maleUTRF-serratus_M_contig907 132954..132972 +
1690964400.366404-UTR-F-serratus_M_contig907:132953..1329721690964400.366404-UTR-F-serratus_M_contig907:132953..132972Fucus serratus maleUTRF-serratus_M_contig907 132954..132972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932642.236346-CDS-F-serratus_M_contig907:132972..1334191622932642.236346-CDS-F-serratus_M_contig907:132972..133419Fucus serratus maleCDSF-serratus_M_contig907 132973..133419 +
1690964400.3775535-CDS-F-serratus_M_contig907:132972..1334191690964400.3775535-CDS-F-serratus_M_contig907:132972..133419Fucus serratus maleCDSF-serratus_M_contig907 132973..133419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig907.20484.1prot_F-serratus_M_contig907.20484.1Fucus serratus malepolypeptideF-serratus_M_contig907 132973..133419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig907.20484.1

>prot_F-serratus_M_contig907.20484.1 ID=prot_F-serratus_M_contig907.20484.1|Name=mRNA_F-serratus_M_contig907.20484.1|organism=Fucus serratus male|type=polypeptide|length=149bp
MRLVGPFWRDCTIRDCRDLFTVIRQLVGPVLTTATDASHEDVGSFSSTCC
TFRRTHTSTDPIWILCIRLALTLTLSRPSGLAPSARLVSCISPRGLWPLN
FVSCNCMLWGCREKILITHRQEMGPQGNSALTTATGARYVDLGSFSSIT
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mRNA from alignment at F-serratus_M_contig907:132954..133419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig907.20484.1 ID=mRNA_F-serratus_M_contig907.20484.1|Name=mRNA_F-serratus_M_contig907.20484.1|organism=Fucus serratus male|type=mRNA|length=466bp|location=Sequence derived from alignment at F-serratus_M_contig907:132954..133419+ (Fucus serratus male)
TGGTGTTTCGCCCCGAGCCATGCGGCTCGTAGGGCCTTTTTGGCGTGACT
GCACAATTCGGGACTGTAGGGATTTATTTACTGTTATTAGACAACTGGTG
GGTCCAGTTCTGACGACAGCAACCGACGCAAGTCACGAGGATGTGGGGAG
TTTTAGCTCAACATGCTGTACGTTCCGGCGCACGCACACGAGCACAGACC
CTATTTGGATACTTTGTATCCGACTAGCTTTAACCTTGACTCTCTCTCGG
CCCTCAGGACTTGCGCCCAGCGCAAGACTCGTGAGCTGTATTTCACCCCG
GGGCCTATGGCCGTTGAATTTTGTTTCGTGTAACTGTATGCTTTGGGGCT
GTAGGGAAAAAATACTAATTACTCATAGACAAGAGATGGGCCCACAGGGG
AACTCAGCCTTAACGACAGCAACAGGCGCAAGATACGTCGACTTGGGGAG
TTTTAGCTCAATAACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig907:132954..133419+

>mRNA_F-serratus_M_contig907.20484.1 ID=mRNA_F-serratus_M_contig907.20484.1|Name=mRNA_F-serratus_M_contig907.20484.1|organism=Fucus serratus male|type=CDS|length=894bp|location=Sequence derived from alignment at F-serratus_M_contig907:132954..133419+ (Fucus serratus male)
ATGCGGCTCGTAGGGCCTTTTTGGCGTGACTGCACAATTCGGGACTGTAG
GGATTTATTTACTGTTATTAGACAACTGGTGGGTCCAGTTCTGACGACAG
CAACCGACGCAAGTCACGAGGATGTGGGGAGTTTTAGCTCAACATGCTGT
ACGTTCCGGCGCACGCACACGAGCACAGACCCTATTTGGATACTTTGTAT
CCGACTAGCTTTAACCTTGACTCTCTCTCGGCCCTCAGGACTTGCGCCCA
GCGCAAGACTCGTGAGCTGTATTTCACCCCGGGGCCTATGGCCGTTGAAT
TTTGTTTCGTGTAACTGTATGCTTTGGGGCTGTAGGGAAAAAATACTAAT
TACTCATAGACAAGAGATGGGCCCACAGGGGAACTCAGCCTTAACGACAG
CAACAGGCGCAAGATACGTCGACTTGGGGAGTTTTAGCTCAATAACGATG
CGGCTCGTAGGGCCTTTTTGGCGTGACTGCACAATTCGGGACTGTAGGGA
TTTATTTACTGTTATTAGACAACTGGTGGGTCCAGTTCTGACGACAGCAA
CCGACGCAAGTCACGAGGATGTGGGGAGTTTTAGCTCAACATGCTGTACG
TTCCGGCGCACGCACACGAGCACAGACCCTATTTGGATACTTTGTATCCG
ACTAGCTTTAACCTTGACTCTCTCTCGGCCCTCAGGACTTGCGCCCAGCG
CAAGACTCGTGAGCTGTATTTCACCCCGGGGCCTATGGCCGTTGAATTTT
GTTTCGTGTAACTGTATGCTTTGGGGCTGTAGGGAAAAAATACTAATTAC
TCATAGACAAGAGATGGGCCCACAGGGGAACTCAGCCTTAACGACAGCAA
CAGGCGCAAGATACGTCGACTTGGGGAGTTTTAGCTCAATAACG
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