mRNA_F-serratus_M_contig902.20439.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig902.20439.1 vs. uniprot
Match: D7FHX3_ECTSI (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHX3_ECTSI) HSP 1 Score: 367 bits (942), Expect = 2.380e-110 Identity = 246/525 (46.86%), Postives = 290/525 (55.24%), Query Frame = 1
Query: 1 MEAHLRKITRCLGKAVAELEQVSTSEKFAHPIAPHSIGQVDAEWIARFHAGITVPVPPDNDSFAKEE---NDSHLASRNGEDGVGRTDLSRWEFLESKWLPLLRDLHRTVSALDREEGEIQKAENARSSKEKEACSGSEDAAGEAAHHGVPGRRGAAP-------PPRPPKGLLSLRDYTVVHAALEIVVHWGLAPVLEPGLGSFDFDKRPRSRAVKISRRVLQYWKK------------PRQRPEFAG------SSRLAAKDSEPAPSLSAEGSVNHPSLGTGRARAQLALCVKAIQGVVTTDQFLPMLLPLYLPDLLAARLQLVYGRGAAVGSPLDERGCRRRDRSTAPAGMR--------GDVGTTLMFPPSATTGGSRAERQPMGEALQNLLRDLGPRQIMGALRQLLSEGARTPSWLRHHGGRMLSEIVLRPGGVQATLEVYLAGAWAAGGGGSADGGESGKWTEGDGLKACQRVAKLLATPPKRVLPGEYVSRVAPQLAGMLHYDGQQKALITRQVPRV 1467
ME HLRKITRCLG+AVAELE+VS SEK A+ Q+D EW+ARF AGI VP P + A+ + + AS V DL RW FL++KWLPLL+DL+RTV LDREE +Q E PPRPPKGLLSLRDYTV+HAALE+VVHWGL PVLE G+G F+ DKRPRSRAVKISRRVL YW PR+RP + ++R AAK + EG A AQLALC + +QGVVT+ QF+PML+PLYLPDLLAARLQLV+GR A + +R G T P + + GPRQ+MGALR LLS+G+R P W R GR+LSEIVLRPGGVQATLEVYLAGA +G+KAC RVAKLLATPPKRV G YVSRVAPQLA MLH+DGQQ+A++TR V +
Sbjct: 1 MEGHLRKITRCLGRAVAELERVSASEKIANE-------QLDEEWMARFFAGIAVPAPSEATQGAEAQAGFGEQQTAS------VAEKDL-RWTFLKTKWLPLLQDLYRTVGVLDREESALQALEQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPRPPKGLLSLRDYTVIHAALEVVVHWGLVPVLEAGVGVFEADKRPRSRAVKISRRVLHYWSAEKRHVTGDGPSPPRRRPNASSPCGDPVATRPAAKPA----GCCGEGDATARGAD---AYAQLALCTEVVQGVVTSGQFMPMLMPLYLPDLLAARLQLVFGRTAVATXXXXXXXXXXXXTPASALTVRDNDGDERAGATATVADGEPXXXXXXXXXXXXXXXXXXXAAVTNAGPRQVMGALRYLLSQGSRAPPWFRQRAGRILSEIVLRPGGVQATLEVYLAGAXXXXX-------XXXXXXXXEGMKACLRVAKLLATPPKRVASGVYVSRVAPQLAEMLHFDGQQRAIVTRVVAMI 497
BLAST of mRNA_F-serratus_M_contig902.20439.1 vs. uniprot
Match: A0A6H5JPL2_9PHAE (RTP1_C1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPL2_9PHAE) HSP 1 Score: 348 bits (893), Expect = 1.200e-103 Identity = 246/559 (44.01%), Postives = 291/559 (52.06%), Query Frame = 1
Query: 1 MEAHLRKITRCLGKAVAELEQVSTSEKFAHPIAPHSIGQVDAEWIARFHAGITVPVPPDNDSFAKEE---NDSHLASRNGEDGVGRTDLSRWEFLESKWLPLLRDLHRTVSALDREEGEIQKAENARSSKEKEACSGSEDAAGEAAHHGVPGRRGAAPPP-------RPPKGLLSLRDYTVVHAALEIVVHWGLAPVLEPGLGSFDFDKRPRSRAVKISRRVLQYWKK------------PRQRPEFAGS--SRLAAKDSEPAPSLSAEGSVNHPSLGTGRARAQLALCVKAIQGVVTTDQFLPMLLPLYLPDLLAARLQLVYGRGAAVGSPLD--------------------------------------------ERGCRRRDRSTAPAGMRGDVGTTLMFPPSATTGGSRAERQPMG--EALQNLLRDLGPRQIMGALRQLLSEGARTPSWLRHHGGRMLSEIVLRPGGVQATLEVYLAGAWAAGGGGSADGGESGKWTEGDGLKACQRVAKLLATPPKRVLPGEYVSRVAPQLAGMLHYDGQQKALITRQVPRV 1467
ME HLRKITRCLG+AV ELE+VS SEK A+ +A + R I VP P D A+ + + AS VG+ DL RW FL++KWLPLL+DL+RTV LDREE +Q E RPPKGLLSLRDYTV+HAALE+VVHWGL PVLE G+G F+ DKRPRSRAVKISRRVL YW PR+RP + S +A + EG G A AQLALC + +QGVVT+ QF+PML+PLYLPDLLAARLQLV+GR A + E RR G+ GT S A P+ L+ +++D GPRQ+MGALR LLS+GAR P WLR GR+LSEIVLRPGGVQATLEVYLAGA +G+KAC RVAKLLATPPKRV G YVSRVAPQLA MLH+DGQQ+A++TR V +
Sbjct: 1 MEGHLRKITRCLGRAVTELERVSASEKIAN----------EARILLRGRQRIAVPAPSDATQGAEAQASFGEQETAS------VGQKDL-RWTFLKTKWLPLLQDLYRTVGVLDREESALQALEQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPPKGLLSLRDYTVIHAALEVVVHWGLVPVLEAGVGVFEADKRPRSRAVKISRRVLHYWSAEKRRVTGDGPSPPRRRPNASSSCGDPVATWPAAKPARCCGEGDAT---AGGADAYAQLALCAEVVQGVVTSGQFMPMLMPLYLPDLLAARLQLVFGRTAVAMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAEGDRHRRXXXXXXVTSEGETGTA-----------SAAAHSPLSMMPPLRAMVQDAGPRQVMGALRHLLSQGARAPPWLRQRAGRILSEIVLRPGGVQATLEVYLAGAXXXXX-------XXXXXXXXEGMKACLRVAKLLATPPKRVASGVYVSRVAPQLAEMLHFDGQQRAIVTRVVAMI 521
BLAST of mRNA_F-serratus_M_contig902.20439.1 vs. uniprot
Match: A0A835YW23_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW23_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 5.320e-18 Identity = 80/236 (33.90%), Postives = 111/236 (47.03%), Query Frame = 1
Query: 469 PRPPKGLLSLRDYTVVHAALEIVVHWGLAPVLEPGLGSFDFDKRPRSRAVKISRRVLQYWKKPRQRPEFAGSSRLAAKDSEPAPSLSAEGSVNHPSLGTGRARAQLALCVKAIQGVVTTDQFLPMLLPLYLPDLLAARLQLVYGRGAAVGSPLDERGCRRRDRSTAPAGMRGDVGTTLMFPPSATTGGSRAERQPMGEALQNLLR-DLGPRQIMGALRQLLSEGARTPSWLRHHGG 1173
P+ P+GLLSLRDY+ VH ALE++V+W + P +EPG+G FD + RP ++AVK+ RR+L + G S + K + T A AQL + +Q ++ DQF PMLLP YL D+LA LQ+ YG + RSTA + + D T + P R MG Q L R D PR + GART + ++ GG
Sbjct: 118 PKAPRGLLSLRDYSAVHTALELLVYWAIIPAVEPGVGPFDPETRPPAKAVKVHRRLLLW-----------GLSYASKKG-----------------MVTQEAVAQLLAVLGVMQRLLMLDQFAPMLLPRYLADVLAGLLQVAYGFNTDL-------------RSTAQSAL--DALTAALNP-----------RLTMGSLRQLLSRGDAAPRWLRA------HAGARTTALVQRPGG 293
BLAST of mRNA_F-serratus_M_contig902.20439.1 vs. uniprot
Match: W4FLD8_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FLD8_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 4.240e-10 Identity = 89/318 (27.99%), Postives = 133/318 (41.82%), Query Frame = 1
Query: 469 PRPPKGLLSLRDYTVVHAALEIVVHWGLAPVLEPGLGSFDFDKRPRSRAVKISRRVLQYWKKPRQRPEFAGSSRLAAKDSEPAPSLSAEGSVNHPSLGTGRARAQLALCVKAIQGVVTTDQFLPMLLPLYLPDLLAARLQLVYGRGAAVGSPLDERGCRRRDRSTAPAGMRGDVGTTLMFPPSATTGGSRAERQPMGEALQNLLRDLGPRQIMGALRQLLSEGARTPSWLRHHGGRMLSEIVLRPGGVQATLEVYLAGAWAAGGGGSADGGESGKWTEGDGLKACQRVAKLLATPPKRVLPGEYVSRVAPQLAGMLHY 1422
PR P LLSLRDYT V AA+E+++ WG P +E G+ + +R ++ KI R ++Q+ +A +S P+ A L ++ + V+ QF PMLLP YL DLLA LVY R SP PP+A LQ L+ L R MG+LR +L+ ++ + G +LS+ VL+ GGV AT+E+ L+ S D G + +A VA L+A P+ + +Y+ + PQ+ +L Y
Sbjct: 91 PRAPLCLLSLRDYTTVQAAVELILVWGAYPCVEAGILT-PIPQRVVAKTFKIDRAMVQH---------------VATLESNPS------------------TPAHLDNVLRGLLHVLELSQFKPMLLPAYLADLLAC---LVY-RIHCQPSP----------------------------PPTAAAA-----------RLQQLMDVLPIRVFMGSLRGVLATPHANTTF-KAQCGHLLSQCVLKDGGVLATIEMLLS---------SVDDGNT---------QARLHVAALVARCPRALTTTQYLLAIGPQVMWLLTY 312
BLAST of mRNA_F-serratus_M_contig902.20439.1 vs. uniprot
Match: W4FL01_9STRA (RTP1_C1 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FL01_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 4.720e-10 Identity = 89/318 (27.99%), Postives = 133/318 (41.82%), Query Frame = 1
Query: 469 PRPPKGLLSLRDYTVVHAALEIVVHWGLAPVLEPGLGSFDFDKRPRSRAVKISRRVLQYWKKPRQRPEFAGSSRLAAKDSEPAPSLSAEGSVNHPSLGTGRARAQLALCVKAIQGVVTTDQFLPMLLPLYLPDLLAARLQLVYGRGAAVGSPLDERGCRRRDRSTAPAGMRGDVGTTLMFPPSATTGGSRAERQPMGEALQNLLRDLGPRQIMGALRQLLSEGARTPSWLRHHGGRMLSEIVLRPGGVQATLEVYLAGAWAAGGGGSADGGESGKWTEGDGLKACQRVAKLLATPPKRVLPGEYVSRVAPQLAGMLHY 1422
PR P LLSLRDYT V AA+E+++ WG P +E G+ + +R ++ KI R ++Q+ +A +S P+ A L ++ + V+ QF PMLLP YL DLLA LVY R SP PP+A LQ L+ L R MG+LR +L+ ++ + G +LS+ VL+ GGV AT+E+ L+ S D G + +A VA L+A P+ + +Y+ + PQ+ +L Y
Sbjct: 91 PRAPLCLLSLRDYTTVQAAVELILVWGAYPCVEAGILT-PIPQRVVAKTFKIDRAMVQH---------------VATLESNPS------------------TPAHLDNVLRGLLHVLELSQFKPMLLPAYLADLLAC---LVY-RIHCQPSP----------------------------PPTAAAA-----------RLQQLMDVLPIRVFMGSLRGVLATPHANTTF-KAQCGHLLSQCVLKDGGVLATIEMLLS---------SVDDGNT---------QARLHVAALVARCPRALTTTQYLLAIGPQVMWLLTY 312
BLAST of mRNA_F-serratus_M_contig902.20439.1 vs. uniprot
Match: UPI001591F7F9 (transport and Golgi organization protein 6 homolog isoform X1 n=10 Tax=Lacertinae TaxID=162266 RepID=UPI001591F7F9) HSP 1 Score: 72.4 bits (176), Expect = 1.150e-9 Identity = 100/339 (29.50%), Postives = 138/339 (40.71%), Query Frame = 1
Query: 457 AAPPPRPPKGLLSLRDYTVVHAALEIVVHWGLAPVLEPGLGSFDFDKRPRSRAVKISRRVLQYWKKPRQRPEFAGSSRLAAKDSEPAPSLSAEGSVNHPSLGTGRARAQLALCVKAIQGVVTTDQFLPMLLPLYLPDLLAARLQLVY----GRGAAVGSPLDER--GCRRRDRSTAPAGMRGDVGTTLMFPPSATTGG-SRAERQPMGEALQNLL---------RDL-----GPRQIMGALRQLLSEG-ARTPSWLRHHGGRMLSEIVLRPGGVQATLEVYLAGAWAAGGGGSADGGESGKWTEGDGLKACQRVAKLLATPPKRVLPGE-YVSRVAPQL 1404
AAPP P LS+ V AAL+ VV G+ P L PG+G L R R EF+ + A P + R A C ++ V ++L +L DLLA QL + +G PL+E+ C+ R VG L P G + ER EALQ LL R+L GP+Q G+ + G A P+WLR G++LSE ++RPGGVQA + L GA A GGS+ + W + C VA++L+T P++ L E Y +V PQ+
Sbjct: 122 AAPPLSP--DTLSIAQEKTVQAALQFVVTLGICPYLLPGVG-------------------LPL----RSRTEFSALVQEVAS----------------PRCISSATRRLYATCTVLME-VADHTSLSRLILTRHLGDLLAGLCQLGFCPARRKGEEEAKPLEEQVVSCQLGFRVGNLLWPSAAVGLQLPSAPGVMGNGLTEEERSSCREALQGLLDRVYQPLVVRELLLLQGGPKQGSGSSGRSSERGLAPAPAWLRRLCGQLLSERLIRPGGVQAVVRGILEGAGAGAAGGSSAEAAAADW------RKCDAVARILSTCPQQSLSLEDYCQQVCPQV 412
BLAST of mRNA_F-serratus_M_contig902.20439.1 vs. uniprot
Match: A0A024U9C1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U9C1_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.440e-9 Identity = 88/319 (27.59%), Postives = 137/319 (42.95%), Query Frame = 1
Query: 469 PRPPKGLLSLRDYTVVHAALEIVVHWGLAPVLEPGLGSFDFDKRPRSRAVKISRRVLQYWKKPRQRPEFAGSSRLAAKDSEPAPSLSAEGSVNHPSLGTGRARAQLALCVKAIQGVVTTDQFLPMLLPLYLPDLLAARLQLVYGRGAAVGSPLDERGCRRRDRSTAPAGMRGDVGTTLMFPPSATTGGSRAERQPMGEALQNLLRDLGPRQIMGALRQLLSEGARTP---SWLRHHGGRMLSEIVLRPGGVQATLEVYLAGAWAAGGGGSADGGESGKWTEGDGLKACQRVAKLLATPPKRVLPGEYVSRVAPQLAGML 1416
PR P LLSLRDYT V AA+E+++ WG P +E G+ + +R ++ KI + ++Q+ +A S P +N PS QL +K++ ++ QF PMLLP YL DLL + ++ C P + G + A LQ+LL + R IM +LR +L+ TP + + GR+LS+ VL+ GGV AT+E+ L+ + D G + +A +VA L+A P+ + EY +APQ+ +L
Sbjct: 94 PRAPLCLLSLRDYTGVQAAMELILVWGAYPCVEHGVLT-PIPQRVVAKTFKIDQAMVQH---------------VATAASSP---------INPPS--------QLDNVLKSLLRILLLSQFKPMLLPAYLSDLLVCLIVRIH--------------CM----------------------PDSPPGAAAA-------LLQHLLDAVPIRVIMASLRGVLA----TPHDNAVFKAQCGRLLSQCVLKDGGVLATIEMLLS---------TVDEGNT---------QARLQVAALIARCPRALTTTEYFHAIAPQVRWLL 314
BLAST of mRNA_F-serratus_M_contig902.20439.1 vs. uniprot
Match: A0A6G0XAH2_9STRA (RTP1_C1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XAH2_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.490e-9 Identity = 86/325 (26.46%), Postives = 133/325 (40.92%), Query Frame = 1
Query: 469 PRPPKGLLSLRDYTVVHAALEIVVHWGLAPVLEPGLGSFDFDKRPRSRAVKISRRVLQYWKKPRQRPEFAGSSRLAAKDSEPAPSLSAEGSVNHPSLGTGRARAQLALCVKAIQGVVTTDQFLPMLLPLYLPDLLAARLQLVYGRGAAVGSPLDERGCRRRDRSTAPAGMRGDVGTTLMFPPSATTGGSRAERQPMGEALQNLLRDLGPRQIMGALRQLLSEGARTPSWLRHHGGRMLSEIVLRPGGVQATLEVYLAGAWAAGGGGSADGGESGKWTEGDGLKACQRVAKLLATPPKRVLPGEYVSRVAPQLAGMLHYDGQQKAL 1443
PR P LLSLRDYT V AA+E++ WG P +E G+ + D+R +R K+ + +Q R+AA ++ SV++P+ QL + + ++ QF PMLLP YL DLLA + ++ C + T + L L L R IM +LR +L + T + G +LS+ VL+ GGV AT+E+ L+ + D G + +A VA L++ PK + +Y+ VAPQ+ +L + K L
Sbjct: 94 PRAPLCLLSLRDYTTVQAAIELITVWGAYPCVEAGILT-PIDQRVMTRTFKMDKTFVQ---------------RVAALNA----------SVDNPA-------EQLDNVISHLLSLLQLSQFKPMLLPSYLSDLLACLVFRIH--------------CMPENPPTTSRSL-----------------------------LNTLFETLPIRVIMSSLRGVLGQ-RHTNIPFKAQCGLLLSQCVLKDGGVLATIEMLLS---------TVDEGNT---------QARLHVAALISRCPKALSASDYLRAVAPQVHHLLTHSTTTKLL 323
BLAST of mRNA_F-serratus_M_contig902.20439.1 vs. uniprot
Match: A0A8C2V0B2_CHILA (Transport and golgi organization 6 homolog n=3 Tax=Chinchilla lanigera TaxID=34839 RepID=A0A8C2V0B2_CHILA) HSP 1 Score: 70.5 bits (171), Expect = 4.590e-9 Identity = 52/141 (36.88%), Postives = 72/141 (51.06%), Query Frame = 1
Query: 1048 QPMGEALQNLLRDLGPRQIMGALRQLLSEGARTPSWLRHHGGRMLSEIVLRPGGVQATLEVYLAGAWAAGGGGSADGGESGKWTEGDGLKACQRVAKLLATPPKRVL-PGEYVSRVAPQLAGMLHYDGQQKALITRQVPRV 1467
QP+ +L+ P+ GA QL RTP+WLR G++LSE ++RPGGVQA + L GA A GGS + W K C +AK+LA+ P++ L P Y + PQ+ + H+ Q L RQ RV
Sbjct: 269 QPLAVRELLILQGGPPQSCTGAKTQLR---CRTPAWLRRLCGQLLSERLMRPGGVQAVVRGILEGAGAGAAGGSDAEATAADW------KKCDLIAKILASCPQQSLSPESYYRDICPQILDLFHF---QDKLTARQFQRV 397
BLAST of mRNA_F-serratus_M_contig902.20439.1 vs. uniprot
Match: G5C699_HETGA (Transmembrane and coiled-coil domain-containing protein 7 n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5C699_HETGA) HSP 1 Score: 69.3 bits (168), Expect = 9.120e-9 Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 1141 RTPSWLRHHGGRMLSEIVLRPGGVQATLEVYLAGAWAAGGGGSADGGESGKWTEGDGLKACQRVAKLLATPPKRVL-PGEYVSRVAPQLAGMLHYDGQQKALITRQVPRV 1467
RTP+WLRH G++LSE ++RP GVQA + L GA A GGS + W K C +AK+LA+ P++ L P +Y + PQ+ + H+ Q L RQ RV
Sbjct: 188 RTPAWLRHLCGQLLSERLMRPSGVQAVVRGILEGAGAGAAGGSDAEATAADW------KKCDLIAKILASCPQQSLSPEDYYRDICPQILDLFHF---QDKLTVRQFQRV 288 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig902.20439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig902.20439.1 >prot_F-serratus_M_contig902.20439.1 ID=prot_F-serratus_M_contig902.20439.1|Name=mRNA_F-serratus_M_contig902.20439.1|organism=Fucus serratus male|type=polypeptide|length=492bp MEAHLRKITRCLGKAVAELEQVSTSEKFAHPIAPHSIGQVDAEWIARFHAback to top mRNA from alignment at F-serratus_M_contig902:178635..182651- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig902.20439.1 ID=mRNA_F-serratus_M_contig902.20439.1|Name=mRNA_F-serratus_M_contig902.20439.1|organism=Fucus serratus male|type=mRNA|length=4017bp|location=Sequence derived from alignment at F-serratus_M_contig902:178635..182651- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig902:178635..182651- >mRNA_F-serratus_M_contig902.20439.1 ID=mRNA_F-serratus_M_contig902.20439.1|Name=mRNA_F-serratus_M_contig902.20439.1|organism=Fucus serratus male|type=CDS|length=2952bp|location=Sequence derived from alignment at F-serratus_M_contig902:178635..182651- (Fucus serratus male)back to top |