mRNA_F-serratus_M_contig9.20372.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 190 bits (483), Expect = 7.140e-50 Identity = 93/225 (41.33%), Postives = 144/225 (64.00%), Query Frame = 1
Query: 1 VARPKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKR 675
V RP+D+ +IG+K ++K K G DG+VEKY+ RLVAQGF QVEG+ Y E ++P + SIR+LLA+AA D E+ D K +FL ++EE+I +K+P + AVWRL KA+YGL QA R W K ++ +GF R +AD CVF+K +D ++ V +VDD + + K ++LG +F + D+G+ + ++ +TRNR+ R ++ Q Y+E +++R
Sbjct: 1030 VPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAELKTLGFTRLQADHCVFYKNMDRHPPIIAV-YVDDNMVLSDSLDLVTKTKSDLGSRFDMTDLGEVCWILNMEVTRNRQERTIRLSQSQYIEDILER 1253
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE) HSP 1 Score: 176 bits (447), Expect = 2.610e-46 Identity = 90/244 (36.89%), Postives = 147/244 (60.25%), Query Frame = 1
Query: 10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGVPTLSKAD 741
P+ + + K + K +GK+ K++ RLVA+GF ++ V Y SP PS+ASI+++LA+A K L H+D K+++ A ++E+I +++P + + + +AIYGL Q+GR W D + GFE+ KADPCVF K+VD +++V++VDD+ D+ ++ +A L KKF K++G+ ++ C I R+ +A LK Q Y+++MVKRFDV+ +IPA+ GV K D
Sbjct: 201 PEGRRPVSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDE-DCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQSTSRIPASPGVDLGPKRD 443
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.600e-45 Identity = 88/237 (37.13%), Postives = 145/237 (61.18%), Query Frame = 1
Query: 10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGV 720
P+ + + +K + K ++GK++ ++ RLVA+GF Q+ V Y SP PS+ASI+++LA+A K L H+D K+++ A ++E++ +K+P + + + +AIYGL Q+GR W D + GFE+ KADPCVF K+VD +++V++VDDI D+ ++ +A L KKF K++G+ ++ C I R+ +A L+ Q Y++SMV+RFDVK +IPA G
Sbjct: 776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA 1011
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.720e-45 Identity = 88/237 (37.13%), Postives = 145/237 (61.18%), Query Frame = 1
Query: 10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGV 720
P+ + + +K + K ++GK++ ++ RLVA+GF Q+ V Y SP PS+ASI+++LA+A K L H+D K+++ A ++E++ +K+P + + + +AIYGL Q+GR W D + GFE+ KADPCVF K+VD +++V++VDDI D+ ++ +A L KKF K++G+ ++ C I R+ +A L+ Q Y++SMV+RFDVK +IPA G
Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA 1390
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.740e-45 Identity = 88/237 (37.13%), Postives = 145/237 (61.18%), Query Frame = 1
Query: 10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGV 720
P+ + + +K + K ++GK++ ++ RLVA+GF Q+ V Y SP PS+ASI+++LA+A K L H+D K+++ A ++E++ +K+P + + + +AIYGL Q+GR W D + GFE+ KADPCVF K+VD +++V++VDDI D+ ++ +A L KKF K++G+ ++ C I R+ +A L+ Q Y++SMV+RFDVK +IPA G
Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA 1410
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.760e-45 Identity = 88/237 (37.13%), Postives = 145/237 (61.18%), Query Frame = 1
Query: 10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGV 720
P+ + + +K + K ++GK++ ++ RLVA+GF Q+ V Y SP PS+ASI+++LA+A K L H+D K+++ A ++E++ +K+P + + + +AIYGL Q+GR W D + GFE+ KADPCVF K+VD +++V++VDDI D+ ++ +A L KKF K++G+ ++ C I R+ +A L+ Q Y++SMV+RFDVK +IPA G
Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGA 1553
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 176 bits (445), Expect = 3.060e-45 Identity = 89/244 (36.48%), Postives = 147/244 (60.25%), Query Frame = 1
Query: 10 PKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIKIPAASGVPTLSKAD 741
P+ + + +K + K ++GK++ ++ RLVA+GF Q+ V Y SP PS+ASI+++LA+A K L H+D K+++ A ++E++ +K+P + + + +AIYGL Q+GR W D + GFE+ KADPCVF K+VD +++V++VDDI D+ ++ +A L KKF K++ + ++ C I R+ + L+ Q Y++SMVKRFDV+ +IPA+ GV K D
Sbjct: 330 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRD 572
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE) HSP 1 Score: 162 bits (410), Expect = 1.630e-44 Identity = 82/211 (38.86%), Postives = 131/211 (62.09%), Query Frame = 1
Query: 55 KLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVK 687
K ++GKV+K++ LVA+GF Q+ V + SP PS+ASI+++LA+A K L H+D K+++ A ++E++ ++IP + + + + +AIYGL Q+GR W D + GFE+ KADPCVF K+VD +V+V++VDDI D+ ++ +A L KKF K+ G+ ++ C I R+ + K Q Y++SMVKRFDV+
Sbjct: 10 KTNKEGKVDKFKALLVARGFSQIPNVDFFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNRGEYEWFDGCAIDRDVEPGTFKISQTAYIDSMVKRFDVQ 219
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 173 bits (438), Expect = 2.850e-44 Identity = 93/249 (37.35%), Postives = 146/249 (58.63%), Query Frame = 1
Query: 1 VARPKDKLVIGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVK--KAIKIPAASGVPTLSKAD 741
V RP+D+ V+G K +++ K G DG++EKY+ R+VA+GF QVEGV YT+ ++P ASIR LLA+AA D E+ D K +FL +++E+I + P FQ VW+L KA+YGL QA R W K + ++GF R+ AD VF+K DG ++V V++DD+ ++ A+LG + + D+G+A ++ I R+R R ++ Q YVES++ + + + P A + L +D
Sbjct: 317 VERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKIRAEFESLGFTRSNADHSVFYKNEDGVL-LIVAVYIDDMLIFCNSLPAVEALKADLGSHYDMTDLGEARRILNIKIIRDRARRTIELTQRQYVESILTHQGMADCRPVSTPMAQNLKLLKLSD 564
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR) HSP 1 Score: 169 bits (427), Expect = 4.540e-44 Identity = 91/245 (37.14%), Postives = 150/245 (61.22%), Query Frame = 1
Query: 28 IGTKTIYKQKLGQDGKVEKYRCRLVAQGFWQVEGVYYTEKYSPTPSTASIRMLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFP--GAVWRLNKAIYGLVQAGRCWNNKFCDDMTAIGFERAKADPCVFHKVVDGEAEVVVVVHVDDIFAHAKDQATMDKFVAELGKKFRLKDMGDAGYYMSCHITRNRKARELKFDQHLYVESMVKRFDVKKAIK--IPAASGVPTLSKADGPR 750
IG K +YK+K+G DGKVE Y+ RLVA+G+ Q EG+ Y E +SP SIR+LLA+AA D E+ D K +FL +++E++ + PE F V +L ++IYGL QA R WN +F + + F + + +PCV+ K+ G + + +V++VDDI D +M L ++F +KD+G+A Y + I R+R R L Q +Y+++++KR++++K+ + +P GV +LS+ + P+
Sbjct: 137 IGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPK 379 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig9.20372.1 >prot_F-serratus_M_contig9.20372.1 ID=prot_F-serratus_M_contig9.20372.1|Name=mRNA_F-serratus_M_contig9.20372.1|organism=Fucus serratus male|type=polypeptide|length=198bp MLLAMAAAKDGELRHFDAKRSFLKADIEEKICIKIPEEFQEFPGAVWRLNback to top mRNA from alignment at F-serratus_M_contig9:1148955..1150120+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig9.20372.1 ID=mRNA_F-serratus_M_contig9.20372.1|Name=mRNA_F-serratus_M_contig9.20372.1|organism=Fucus serratus male|type=mRNA|length=1166bp|location=Sequence derived from alignment at F-serratus_M_contig9:1148955..1150120+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig9:1148955..1150120+ >mRNA_F-serratus_M_contig9.20372.1 ID=mRNA_F-serratus_M_contig9.20372.1|Name=mRNA_F-serratus_M_contig9.20372.1|organism=Fucus serratus male|type=CDS|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig9:1148955..1150120+ (Fucus serratus male)back to top |