mRNA_F-serratus_M_contig9.20359.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig9.20359.1 vs. uniprot
Match: A0A6H5KNL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNL5_9PHAE) HSP 1 Score: 227 bits (579), Expect = 5.690e-61 Identity = 178/463 (38.44%), Postives = 235/463 (50.76%), Query Frame = 3
Query: 120 SPTRPELHARVGDGS-DSDEDFALP----KPETIGPATTTTPSVSQAMDSKDEGIERSPT-----DSATSAENPP----TVVAAAPKPKFDNKDFLKFPQVRSQKSARWDNITKKELAWYASCPVLVVPLSQHPMVPGNIPGDGWIRTYGPGEANNTAPSSRRYVIIQYLPLCCKSYHKPTCDYFVVRGKGVERVIPYNTLMESKK--RPKELGPEGRWADTDLHCKRVMKNPKTCSLKSEDWEVTMKWAQMYLDRALELDRERDKKGEQRRKEAEEEHRIHEAEVQKRLELEKARRSRDGVSEGTKEGDRDRLGSRTGTGARPACTMVKRTKNLKLAPGDWIFYWDQTKRVGTVEARRNARILEIREEEEAREHGVERLVLDNDEIVLDDWVIQKYAVKKNKRTGHETKVLDTRGNEVRKYKLVPGKLEGVETRGKRLAYELMAGVRQAAKALGAGDQLRNA 1460
SP P A D S DS+++F+LP +P A P + DEG S T ++A P + KPKFD FPQV Q ++ WD+IT +L W CP +VVP H P D + YGP A + PS R+VI+Q+LPLC + KP Y VRGK VE V+PYNT+M KK + + LGPE WAD D H ++ K+ L ++W+VT++ AQ +L RALEL + KK ++ S G G+ G+ T P+ V+ + L LAPGD IFYWD+TK VG +RR A ILEIR ++ A+E VE LVLDN ++VL+DWVIQ+Y K++ TG LD RG EV+ YKL GKLEGV+ R L+ G R++ A GAGD LRNA
Sbjct: 22 SPPPPRREAVDFDASIDSEDEFSLPDTPPRPTPPPAAENIKPPTQVEGGAVDEGGGTSATGWGGGEAAAEPREPDGHDFAKIKGKSKPKFDQTKLEDFPQVTDQINSYWDSITPDQLVWCQDCPAIVVPERLHIFAKVKAPPDS-VMAYGP-RAKSVTPSRNRFVILQFLPLCMTCHAKPETPYTCVRGKPVESVLPYNTVMAGKKAGQDRALGPEDSWADADYHFRKA--KGKSKQLAKQNWDVTLEHAQKFLSRALEL---KAKKAQEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGEDGGE----GADDDTPKYPS-KPVQMERGLPLAPGDRIFYWDRTKVVGLASSRREATILEIRGKKAAKEANVELLVLDNHQVVLNDWVIQRYI--KDEDTGGMQ--LDYRGAEVQHYKLKRGKLEGVDQRRHERMETLVDGFRKSITAYGAGDHLRNA 468
BLAST of mRNA_F-serratus_M_contig9.20359.1 vs. uniprot
Match: D8LAZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAZ5_ECTSI) HSP 1 Score: 207 bits (526), Expect = 6.710e-54 Identity = 149/382 (39.01%), Postives = 192/382 (50.26%), Query Frame = 3
Query: 336 KPKFDNKDFLKFPQVRSQKSARWDNITKKELAWYASCPVLVVPLSQHPMVPGNIPGDGWIRTYGPGEANNTAPSSRRYVIIQYLPLCCKSYHKPTCDYFVVRGKGVERVIPYNTLMESKK--RPKELGPEGRWADTDLHCKRVMKNPKTCSLKSEDWEVTMKWAQMYLDRALELDRERDKKGEQRRKEAEEEHRIHEAEVQKRLELEKARRSRDGVSEGTKEGDRDRLGSRTGTGA-----RPACTMVKRTKNLKLAPGDWIFYWDQTKRVGTVEARRNARILEIREEEEAREHGVERLVLDNDEIVLDDWVIQKYAVKKNKRTGHETKVLDTRGNEVRKYKLVPGKLEGVETRGKRLAYELMAGVRQAAKALGAGDQLRNA 1460
KPKFD + FPQ CP +VVP H P DG + YGP A + PS R+VI+Q+LPLC + KP Y VRGK VE V+PYNT+M KK + + LGPE WAD D H ++ K+ L ++W+VT++ AQ +L RALEL ++ + E E G G GA + + V+ + L LAPGD IFYWD+TK VG +RR A ILEIR ++ A+E VE LVLDN ++VL+DWVIQ+Y K++ TG LD RG EV YKL GKLEGV+ R L+ G R++ A GAGDQLRNA
Sbjct: 105 KPKFDQTELEVFPQ---------------------DCPAIVVPEHLHIFAKVKAPPDG-VMAYGP-RAKSVTPSRNRFVILQFLPLCLTCHAKPETPYACVRGKPVESVLPYNTVMAGKKAGQDRALGPEDSWADADYHFRKA--KGKSKQLSKQNWDVTLEHAQKFLSRALELKAKK----------------VQEDEEXXXXXXXXXXXXXXXXXXXXXXXXXSSAGEDGGEGADDDIPKYSSKSVQMERGLPLAPGDRIFYWDRTKIVGLASSRREATILEIRGKKAAKEANVELLVLDNHQVVLNDWVIQRYI--KDEDTGEMQ--LDYRGAEVHHYKLKRGKLEGVDQRRHERMETLVDGFRKSITAYGAGDQLRNA 441 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig9.20359.1 >prot_F-serratus_M_contig9.20359.1 ID=prot_F-serratus_M_contig9.20359.1|Name=mRNA_F-serratus_M_contig9.20359.1|organism=Fucus serratus male|type=polypeptide|length=544bp MEDSDPVEFPFAFAPVISPTRPELHARVGDGSDSDEDFALPKPETIGPATback to top mRNA from alignment at F-serratus_M_contig9:636641..650690+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig9.20359.1 ID=mRNA_F-serratus_M_contig9.20359.1|Name=mRNA_F-serratus_M_contig9.20359.1|organism=Fucus serratus male|type=mRNA|length=14050bp|location=Sequence derived from alignment at F-serratus_M_contig9:636641..650690+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig9:636641..650690+ >mRNA_F-serratus_M_contig9.20359.1 ID=mRNA_F-serratus_M_contig9.20359.1|Name=mRNA_F-serratus_M_contig9.20359.1|organism=Fucus serratus male|type=CDS|length=3264bp|location=Sequence derived from alignment at F-serratus_M_contig9:636641..650690+ (Fucus serratus male)back to top |