prot_F-serratus_M_contig9.20341.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig9.20341.1
Unique Nameprot_F-serratus_M_contig9.20341.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length284
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig9.20341.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 68..97
e-value: 0.011
score: 15.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 129..178
e-value: 4.1E-13
score: 49.3
coord: 199..247
e-value: 2.7E-8
score: 33.9
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 202..236
e-value: 0.0011
score: 17.0
coord: 168..200
e-value: 1.2E-5
score: 23.2
coord: 100..131
e-value: 4.7E-6
score: 24.4
coord: 237..270
e-value: 1.2E-5
score: 23.1
coord: 132..166
e-value: 1.3E-8
score: 32.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 100..126
e-value: 0.0014
score: 18.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 165..199
score: 11.268
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 130..164
score: 12.814
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 235..269
score: 10.358
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 95..129
score: 10.041
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 60..94
score: 6.555
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 200..234
score: 9.821
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 37..183
e-value: 4.9E-34
score: 119.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 184..284
e-value: 1.8E-25
score: 91.9
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 166..281
coord: 68..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig9contigF-serratus_M_contig9:124089..124940 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig9.20341.1mRNA_F-serratus_M_contig9.20341.1Fucus serratus malemRNAF-serratus_M_contig9 124089..124940 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig9.20341.1 ID=prot_F-serratus_M_contig9.20341.1|Name=mRNA_F-serratus_M_contig9.20341.1|organism=Fucus serratus male|type=polypeptide|length=284bp
GYNDDWVSTTRAGVFDEVTAQKGGEEAWTKAYHDRQKTGTAVEAGLARAR
TSDLGRSQEESVKIYANLRASAQNGTWQTALGIITHMKNNGLTPNVRMVT
MAITACSKGRRWEEALMLLRDMPRMGTEPNVVTYNACIHACARGGQWEIS
VELLKEMAREGISPDVTSYSAAIGGCANAKMFRRAIRLLREMPTKGINPG
VVAYNNAVRSCRNSQQWELAVDLLREMIAIGVEPNTITFSMAIAACANNR
RLGDALDLLAEMRGLGMNPDSNCWKAVMRALGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf