mRNA_F-serratus_M_contig895.20309.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig895.20309.1 vs. uniprot
Match: D7FKN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKN6_ECTSI) HSP 1 Score: 337 bits (865), Expect = 7.120e-98 Identity = 279/785 (35.54%), Postives = 383/785 (48.79%), Query Frame = 1
Query: 838 RPFLRQKWLDRSNKVGKASTGLVVEAE--GARNTFLDSSTTSGSGVKRRI-------------------VERHHIRSVVQLARSEARVNAFVVISIFEGLLDVAAVQAGEKTPTTGDDAEKPTGSKITGGIAHGGSFISNPSQRGYIGSARTLPTEFAQDNEDARAV-LMP-----ESKSAEIAQRSVTIVASTTTACASGSTNGDKSGSGAELCAKLGAIPVVLECMDEHADDVRIEHLGIKLLRIFAADASTRKFIAGNTNAVKICVSRITKFPIAGVTAKRGEDTVHSSLPHYPFTREQHTTGADRLDRG--GRREYAERHQAPSEAASGITVASKDQDLDSRSCESNSGDGTVVPQSRTKTSSTQAAAELENRGAVTLG------GTPRTFQGPPS--------EIATRRPERFQDTNDPGATGGTIATDCNSADSTGVIPYDAVDTGISVSERPVTSWFLV--ADFAFVLSVALDCSSKCQDLVGEHNIVTIILA----VVRRMRSDDGN--------C----VILTGNCLRILELIGMGTKERRKLVVEGCVETTVSIIDLFRSHDEVLATAVRLLILLSDTCNGRSRILKTGGIRAVLAAMRRLVSNTPLQVMVVDMLNTMVKEEPNARRELDGIKGGWQWLCQGTPGGGSFLKYMPGEKNIPGWTVGEEERISTSEALSMPEQIVSVWTPCSLAAFMG--------RINDPTHLHYFRVLTETNLLPQAFEDAGKWRERIRRYENDRHIHLFTIARRRLARDQSRAYARSISTVSSL 2985
RPF+RQKWL R + T + +E++ A + L S T+ + R V R H+RSVVQLA SEARVNAFVVIS EGLL VAA + G + P + + GG + GG N +R IG + P N RA L P +S S + + R TT + +GS+ G + SGA LC +L A+P VL C++EHA +IE L ++LL +FA++ + I GN C +R+T ++T ++S + T + G D G GR+ A + A S T + + +DS T A L+ G T G+ PPS TR ER +D + + S D A+ + S + P S V D FVLSVA+ S CQ LV + V + A +V R++ + G+ C L CLR++E +G + RR+LV G VE +S I FR H VL A LL+LLS + GR RILK G R V AM+RLV N +QV +ML T++ EEP ARRE+D IKGGWQWLCQGT GG + ++Y PG+K+IPGWTV EEER++T +AL E S WTP +LA FMG +I + + H+FRV++E LLP ED WR+R+RRYE++RHI + I +RRLARD++ A+ARS+ + SSL
Sbjct: 4 RPFVRQKWLKRL----RHQTAINIESDHRDASSAALSPSNTTSTPASARAPAFSSGQEDAHTPPSALTRVGREHVRSVVQLALSEARVNAFVVISSLEGLLSVAAERIGREGPVGTPSSLREVSQ--AGGRSEGG----NKKKR--IGESSQDPAA----NLGGRATKLYPGPGRNDSGSEDGSLRRAHRGHPTTPSSTNGSSTG-RGESGAALCVRLEAVPAVLGCLEEHAGHKKIEPLAVRLLWVFASEVTAAAAIRGNPAVAAACAARMTP----------SDNTANASTASFLSTGQASDGGGVGDDPGYDGRKGSAGGRKTLGNATS--TTEASAEKVDSNG--------------------TSAMKPLDLGGPETGSTAGDGHGSSLAVPAPPSMANLLPCLSSNTRLEEREED----------ASPERKSRDR-------AMSSAASARKSPPGSHMNVPTTDLVFVLSVAVQDSPVCQRLVLKAGGVAAMSATLQHLVSRVKQEAGSRWDGGAEDCSDRYARLAETCLRVMEYLGCVERGRRRLVRGGSVEIAISTIRCFRCHSGVLTAATGLLLLLSVSPEGRGRILKARGFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGKKHIPGWTVSEEERLNTEKALETAEVAASNWTPYNLATFMGTMRSQHQLQIGNLAYYHFFRVVSEAGLLPHPNEDVHDWRQRLRRYEDERHIRVGNITQRRLARDKTGAHARSLYSSSSL 722
BLAST of mRNA_F-serratus_M_contig895.20309.1 vs. uniprot
Match: A0A6H5JF41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF41_9PHAE) HSP 1 Score: 257 bits (656), Expect = 6.110e-69 Identity = 256/805 (31.80%), Postives = 357/805 (44.35%), Query Frame = 1
Query: 838 RPFLRQKWLDRSNKVGKASTGLVVEAE---GARNTFLDSSTTSGSGVKRRI------------------VERHHIRSVVQLARSEARVNAFVVISIFEGLLDVAAVQAGEK----TPTTGDDAEKPTGSKITGGIAHGGSFISNPSQRGYIGSARTLPTEFAQDNEDARAVLMPESKSAEIAQRSVTIVASTTTACASGSTNGDKSG---SGAELCAKLGAIPVVLECMDEHADDVRIEHLGIKLLRIFAADASTRKFIAGNTNAVKICVSRITKFPIAGVTAKRGED----TVHSSLPHYPFTREQHTTGADRLDRGG---RREYAERHQAPSEAASGITVASKDQDLDSRSCESNSGDGTVVPQSRTKTSSTQAAAELENRGAVTLGGTPRTFQGP-PSEIATRRPERFQDTNDPGATGGTIATDCNSADSTGVIPYDAVDTGISVSERPVTSWFLVADFAFVLSVALDCSSKCQDLV----GEHNIVTIILAVVRRMRSDDGN--------C----VILTGNCLRILELIGMGTKERRKLVVEGCVETTVSIIDLFRS-------------------HD------------------EVLATAVRLLILLSDTCNGRSRILKTGGIRAVLAAMRRLVSNTPLQVMVVDMLNTMVKEEPNARRELDGIKGGWQWLCQGTPGGGSFLKYMPGEKNIPGWTVGEEERISTSEALSMPEQIVSVWTPCSLAAFMGRINDPTHLHYFRVLTETNLLPQAFEDAGKWRERIRRYENDRHIHLFTIARRRLARDQSRAYARSISTVSSL 2985
RPF+RQKWL R + T + +E++ + F S+TTS R V R H+RSVV+LA SEARVNAFVVIS EGLL VA + G + TP + D + G + GG + S+ +G T A N+ E S AQR S ST G G SGA LC +LGA+P VL C++EHA IE L ++LL +FA++ + I GN C +R+T P A + A D T ++S + T Q + G + D G R+ A R + A S T+ + + DS + G P++ G+ G + P PS +A P +T G + + D + A T S S P+ D FVLSVA+ + +CQ LV G + T + ++ R++ G+ C L CLR++E +G + RR+L G VE +S I FR H ++L+T RLL L C ++R G R V AM+RLV N +QV +ML T++ EEP ARRE+D IKGGWQWLCQGT GG + ++Y PGEK+IPGWTV EEER++T +AL E S WTP +LA FMG + L +L +R YE++RHI + I +RRLARD++ A+ARS+ + S+L
Sbjct: 4 RPFVRQKWLKRL----RHETAINIESDHRDASSAAFSPSNTTSTPASARAPAFSSGQEDVHTPPSALTRVGREHVRSVVELALSEARVNAFVVISSLEGLLSVATERLGREGSVGTPNSLHDVSQ-AGRRSEGGDETNRTGESSQYSAAKLGGRSTKLYSGAGRNDSGS-----EDGSLRRAQRGHPTTPS--------STKGSSPGIGESGAALCVRLGAVPAVLGCLEEHAGHKTIEPLAVRLLWVFASEVTAAAAIRGNPAVAAACAARMT--PSAALPATCAIDDNGGTANTSTASFLSTG-QASHGREVGDDPGYDRRKGSAGRRKTLGNATS--TMEASAEKFDSNGTSAVKPPGLGGPET----------------GSTAGDGHGSSLAVPAPSTMAKLLPCLSSNTRLDGEEEEDASPERQRRDR---VMSSAASTRKSPSGSPLK--LPTTDLVFVLSVAMQDTPECQRLVLKAGGVAAMSTTLQHLISRVKQGAGSRWDRSEEDCSDSYARLAEMCLRVMEHLGRVERGRRRLERGGYVEIAISTIRCFRGCHRGRDRFRIVGKLWPCAEHTRQPRARSSGGGSIFFCTCDILSTRRRLLYL-HRCCPSQAR-----GFRVVFEAMQRLVGNDLVQVKGAEMLQTLINEEPQARREMDSIKGGWQWLCQGTSGGDALIRYAPGEKHIPGWTVSEEERLTTEKALETAEVAASNWTPYNLATFMGTMRSQHQLQVGNMLLA---------------DRCHGYEDERHIRVGNITQRRLARDKTGAHARSLYSSSTL 743 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig895.20309.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig895.20309.1 >prot_F-serratus_M_contig895.20309.1 ID=prot_F-serratus_M_contig895.20309.1|Name=mRNA_F-serratus_M_contig895.20309.1|organism=Fucus serratus male|type=polypeptide|length=970bp MRRKKCRRPQPTAPPPSRDEEENVSMSSATSTYRYDSLSSRLIGSKTAFVback to top mRNA from alignment at F-serratus_M_contig895:111580..127136+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig895.20309.1 ID=mRNA_F-serratus_M_contig895.20309.1|Name=mRNA_F-serratus_M_contig895.20309.1|organism=Fucus serratus male|type=mRNA|length=15557bp|location=Sequence derived from alignment at F-serratus_M_contig895:111580..127136+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig895:111580..127136+ >mRNA_F-serratus_M_contig895.20309.1 ID=mRNA_F-serratus_M_contig895.20309.1|Name=mRNA_F-serratus_M_contig895.20309.1|organism=Fucus serratus male|type=CDS|length=5820bp|location=Sequence derived from alignment at F-serratus_M_contig895:111580..127136+ (Fucus serratus male)back to top |