mRNA_F-serratus_M_contig1273.2030.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1273.2030.1
Unique NamemRNA_F-serratus_M_contig1273.2030.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1273.2030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1273contigF-serratus_M_contig1273:204836..211685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.9717336-CDS-F-serratus_M_contig1273:204835..2048651622929206.9717336-CDS-F-serratus_M_contig1273:204835..204865Fucus serratus maleCDSF-serratus_M_contig1273 204836..204865 +
1690962750.2546263-CDS-F-serratus_M_contig1273:204835..2048651690962750.2546263-CDS-F-serratus_M_contig1273:204835..204865Fucus serratus maleCDSF-serratus_M_contig1273 204836..204865 +
1622929206.9883432-CDS-F-serratus_M_contig1273:211448..2116851622929206.9883432-CDS-F-serratus_M_contig1273:211448..211685Fucus serratus maleCDSF-serratus_M_contig1273 211449..211685 +
1690962750.2694187-CDS-F-serratus_M_contig1273:211448..2116851690962750.2694187-CDS-F-serratus_M_contig1273:211448..211685Fucus serratus maleCDSF-serratus_M_contig1273 211449..211685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1273.2030.1prot_F-serratus_M_contig1273.2030.1Fucus serratus malepolypeptideF-serratus_M_contig1273 204836..211685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1273.2030.1

>prot_F-serratus_M_contig1273.2030.1 ID=prot_F-serratus_M_contig1273.2030.1|Name=mRNA_F-serratus_M_contig1273.2030.1|organism=Fucus serratus male|type=polypeptide|length=89bp
WRHGDVTGTQDEVAAGDLRRMASGDISPRTRELGARNQACPPSLGVTEDR
KRNTRPPLEHTLNARPRVRARTGEGSTVQSDGDEVVSGG
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mRNA from alignment at F-serratus_M_contig1273:204836..211685+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1273.2030.1 ID=mRNA_F-serratus_M_contig1273.2030.1|Name=mRNA_F-serratus_M_contig1273.2030.1|organism=Fucus serratus male|type=mRNA|length=6850bp|location=Sequence derived from alignment at F-serratus_M_contig1273:204836..211685+ (Fucus serratus male)
TGGAGGCACGGAGACGTCACAGGCACCCAGGTAAGGGTCAAACTTGCTTT
GTGTGTTCTTGTTAGTCAGAGTTACTGTTGGTCGGTGCGTCATTTTGCCC
ATCTCCCCACGACCTGTACAACGCGTGGTTACTCGGGACTTAGACTACAC
CCTAGTTTGGTACCATATGTACCCATCCACACCGCGTGATCTTGAAAGAC
CATTGGCGTAGAAGACAATATGCACTATGTTCTACGTGGAGATTGAGTCT
GCAGCCGTTTCCGTCGTAGTCTCCACTAGATGTCCATCACAAAATGTGTG
TGCGTGTGTAACCATCGTGTGTGTACCAGAAATCTCTTGAAAAACGAGAC
AAAAATCTTTTGGAAAATGACGTCTGTGTATCTGTAGTGCACAAGTACCA
GTTCTTTGTTGGATGGTGTCATGAGGCTGGCTACCCGTAAAACTATACTC
GTATCCTACGCACAACGGTAGTGGCCAGCCATTGTTCTACTTAATGCAGT
ATGCATTTGTGGCGGGCGTGGGCGGGCAGTGAGCTTACATATCAATCTAT
CGCCTTGTACTGTCCCGTATATTATAGGGTATGGCTATTTGGCCCACCGG
TGGGCTATTCTCTTGTTTACCCCCCCACCTGGATCTCGCGTCAGAAGACT
TGGTTAGTCACAGTACATGCATGGGTGTGTTGGGATTAGGGTTAGCTATT
ATCGGGTCTATCGTGCAGCCCAAACGGTCCCGTCTACGTGCTACCACGGC
CGGTGAGGTGGTTGGTGTTTTCTGGTATGTATGGCTATTTGCCCTTACAT
ACCAGAAAACACCAACCACCCCACCGGCCGTAACATCGCGTAGACAGGAC
CGTTTGGGCTGCACGATAGACCCCATAATAGCCCTGTAACGCGCCAACAC
ACTCGTGCATGTATTGTGACCAACCGTGTTTGTGTAGGTCTGATTCCGTA
AGGCTTGGCATTGGAGGTTGAATAACACGTCTTTGTTACATCCGGAAAGG
AGACAAAACAAGCAGACAAGAGAAGAAAGGAAGTGCCCTAAGGCAGCTCA
AAAGAGACTCTAGGAGTTCCAACATCACCGAATAATTTCCCAACAACGGC
AGTTACACCCTATTGGAATAGACAACGGTTACTAAGTAAGATGTATACTC
AAACACCCTCCCTGCATCGCAACGGACGTCACCGGCGTACGTCTTCTGTG
GTTTCTTCAAACAACAGCTGAGAGTACGAAAGAGAAAATAACCCGGCTTT
ACGGGATAAAACTCCCTCCCCGCTGAAACACCCCTTACAAGAGCCTACTT
TCAACTCAAAAGAAACAAAACAAATCACTCAGGCAAATTCATGAGAAACG
AACGGTGTCTAACAAAAGCCTCTAGTCCAAGCGGCTTCGTCAAAATGTCT
GCATGTTGATTGCTGGACTCCGTGTACTGAATCTTAAGGACCTTACGTTC
TACTAACTCCATGATAAAGTGATAACGTACATCAATGTGCTTCGTCCGCC
CCCCGCTGATTGGTTTTCTGCAATCGCGAGTGCTCCTCTGTTGTCTTCAA
ACAAGTTAATAGTTTCACTGGCAAGCTCTGTGAATAACGCGGTGGCTACG
TATTCTGCCTCACTAGTAGAAATAGTAACACATTGCTGCGTAGTACTACT
AGCACACAACTGTGCCCCCTACCATCACCGCCACTCCGGACACTAAACGC
CTATCATTACCTGTATTGGCGTAATCCGCGTCTACATACACGGAGAGCTT
TCGGTCGCCATCCTTTACGAGCACCAAACCTGGATCTTTCGTTTTATTCA
GGTACGCGATTATTTTCCTACCGGCTCGTCAGTGCCTCTCAGCAGGATCG
TGGGCTTGACGTACTACTGCCCTAACCACATTGGCTATGTCTGGCCGCGT
CATACCACTCAACCAAATCAAACTACCAACAGTCGCCCGAACAGGTTTAT
CACAGACCGGCTCGTCGTTCCTCCTAGGGCCGAGATCTGCCGATTGAGAA
GCCGGGAGATTAGACACTGCGTCAACTCCATAGTGGCTGGCAACAGACTC
GATATACGATCTTATGCGATTCGCGAAGAACGCCTCCTTATCATGCTCAA
ACGCGCACCCTAGGTACCACGAGAGTCCTTCTCTCGTAGTCTGGAACTCG
TCAAAAAGACAAACAATCATAACTACTACATCATCCCTAATCAGCCGGAA
AGCACAACATTGAAGTCCAAATCAGCCTGAATGAATGCTTGTTTTACATC
TAGCTGTAGTAATTTCCAGTCATATTTTGGCAGCAATAGCTACCAAGTTT
AACACTGGACGCAGCTAAACATCAGGTGCCACATCTACGAATTCTCCCTA
TCAGAAATGGCAAAATCGGCGTCCTTCACAACGTGAGGGCAGGAATTGGG
ATCTTCCAACATGCTGTTTCCCCGCTTCGTTCTAGAAACAAGAAAAGCAG
TGTCAGACGTAATCGACGATTTCCCCTCTTTCGAGAGGTCAACCGGGCCC
GTACTCCGTACGCAGCCGGTCAATGGTGAGCTTATCCCTTTCTCGCTCGA
GCATCTGCTGAACCAAATTGTATTCATCAGGTAGAGCTCGCAGGAAAAGT
AAACAAACGACCTCGTCTTCAATCCGAACCATTGGACACACGTTGCGGAC
ATCTTCAATCATTGCAGCTGGTAAGGGAGCGTGGCGTAAAGAATCACGGT
CTACACTACTTTCGATAGCCCGTGAGAGAATCTTCCAAGCAATGAAATGC
TTTTGTATATTCTCGTGGGGGAAAGCCTCCTATAGAGCAGTGATGGACAT
TGTTTCGTCGGAACATCTACTCCTTCGGTAGAATTCCAAATGTCAGCAAT
GGAAATTTTACTCATTCGGTACAAATTCCAAAAACATGCCGTCAAATTTG
GCCAAGCAAATCAACATTTGCTGCCAAGTTGGAAACATTAGTACCATCGA
ACAGAGGGACAATGTTTGACTTGGGTCTCACCATTTCCCCTCCGGTACGG
CACAGCTCCGCTGTCTCCGTTCTGCTGCTCGTTGAGGCAGGTCCTTTGGA
TCGGCACAGCTCCACTGTCGCTGTTTCTGCTGCTCGCCCCTTTGAACAGC
AGGACTTCTACTTTCTTCGACTAACTGAAGTTTTAACTTATATACTGCAG
CCATCAGACGCAGCTGCTCCGCAAATGTCGTCTCAAAACGATGAAAAGTC
AGCAAACGATGGAGCTCCGCTCCCCTCGCTTGCCCTTGCTCTTGCTCTGA
AAATCCAATAAACGATGAAGCTCCGCTTCCCTCGTTCCCTCGTGGCGATG
AACAGCCAGTAAACGGTGAAGCTCCGCTTCCTCCGTTTCTTCGAGGCGAT
GAACAGTCAGTAAACGGTCAAGCACCGCTTGCCCCGTTCCCTAGTGATGA
ACGCTCCATTTCTGTCAGCCATGACAGAACCAGTTACAACTTCCAAAAGA
CGCTAGCGTGTTTGTGTAGGTCTGATTCCGTAAGGCTTGGCATTGGAGGT
TGAATAACACGTCTTTGTTACATCCGGAAAGGAGACAAAACAAGCAGACA
AGAGAAGAAAGGAAGTGCCCTAAGGCAGCTCAAAAGAGATTCTAGGAGTT
CCAACATCACCGAATAATTTCCCAACAACGGCAGTTACATCCTATTGGAA
TAGACAACGGTTACTAAGTAAGTAAGTCTTCTGACGCGAGATCCAGCTGG
TGGGGTAAATTTGGGTATGGCCCACCGGTGGGGCAAATAGCCATTCCCTA
TATTATATGTACAAAAGGTACATCCTAGAGGATCGAGGGTGTGCCATTAA
ATCAATATTGATAAGCCCTGGATCAATTCACGGTGGCGCTGTACAAACTC
TACATGAAACCACAATCCGACCAGAAACATCACGGCAGTCCATGAACCCT
ACTCCTGTAAGGGTCACTTTCTATTGGTATTTTTTCTGGCTGAGTCATGC
ATTGCTGGACTCCCCGATCGTTGTATGGCAAACGCGAAGGGGATTTTCAG
GGTTAGCGTCGATAACGTTTTTTTAGGCGGACACAGACGAGGCGGTAACG
CTATGCGGCGGTATTATAGGCGGTTTTTCGTTTTTTGGCGGTAACGACTT
TAGCGGAGGCGGTAAAACCGAAATATGGCGGTACTTTTTTGGCGGTAGGC
GGTTTTTCGCTTTTCGGCGGTAACGATTTTGACGAAGGCGGTAAAACCAA
AATCTGGCGATAAATAATTGGCGGTAAGCGGTTTTTTGTTTTTTGGTGGT
AACGTAAACGGAGACTCAAAACTAGGCGGTAATTGCAGTACCTAGCTACA
TGTTTTTGGCGCCCGTACGAACGGCAAACCTTTTCCGACGGTTAACCTTG
TACATACACCCTTCGAACGATCGGGTTGGCCCCTTCATGCCAAAACTCGA
GGTAAAAACAACAGGCAAAACTGCGGTTACCACGTTTCATCTTGAATGAA
TAAGGGCAGTCTCATAAAAAGCGAAAGGCAAAAAAACGAATGCCATTGAA
CCCCTAAAACAGCAACAAAACACACAAAAAAATGCCGAGATAAGACTTAA
CAAGGGCAGGCAGACAAGGTATACGATCCGCATGACCATCCGTGATATCT
ATACGGTAAGGATAACCGACATGTTCGACCTCTCCTCCTGCGCCGCCACG
GAAAGATGTGCACTCTTGACTACCCTATCCGGTGCCTGCGCTACAGCAGC
GTCCACCTCGCGGATCTCGTCAATCAAGTGCTCATTCAGCCGAATGAGCA
TCAAGCGCTCGACTTACTTGCAAGCATCCTCCTGAGCGGATCGCCAATGA
GGTGGGCGAGCGCTGAAAATTCGTGTGATGTCAGCTTCCGCGCGCTCTGG
TGGTGTTGCCGGAAATACCCGCTGATCGGCTTCTTCAAGGCCAGAAGGCC
ATCCATCATCTTGAACTGGCTGGTCCACCTTCTCGTCGGGTCATGTTTCG
CAAGGGAGAAAATCGGGGGGGGGGCGGCGGGGCAGAGGGCGGAGGTGTCG
ATTTTTATATTTGATATTTCTATGTTTGATATTTATGCGATGGAAATCGA
ACGAGGTCAAAGAGACAACAAACGTAAGCATTATTAAGCACAGTAACGAA
AGCTGCCGATCCGCGTCGAATTTGAAGACTGAAGGTTTCAATTTCAAGTA
TCATATATACCGGAAAATACAAAGTACTACCATAAAATTTAAAATTTAAT
GATCAGCGACTGAAAAACAAAAACGGAGTATAAAAATATAAAAATATTTC
GTGCATTACAGCTGCAACACAAACGAGTACCAGAGAATTCAAGATGAACA
AACACAAAATTCAAAATAAAAATCACCTCGTGGCGTTTCGCCTGATGAGC
TCGTATATACGAGGGAGGTCCTCCTCCAGCTTCTGGAGTTCAGCGTGTCG
CTGTTGACGGCGGAGTGGCTGGAGACACCGACACACGCTGCCAGCTTCTT
CAGCTCGCCCATCGTTTTGTTCTTGCAACGCGCCGCAGCACCCGAAATGC
CCAGACTCCACATGGCCGCGGAGTTGACGCGGTGGCAGTTGCACTTGATG
ACCTCCACGCCCAATGCCTCACACGCGTTCACAACGTTTCCACCTTGACC
CATTGTACAGCATCCCACATTTTACTTGATGCCAAGGTAAATACTGGTAC
AATCTATTTCAGCAAGGGGTTCTACCGACGACGAATCCGAATAACCAAAG
AAGAAAGGACAAAAAAGTAGAAAATGCCGAAAAAAAAAGGTCCCACGAGG
GGTTGAACCCCAGTTATTGGATATCTACTCCTGACCACTCCGGCATGGTA
TCACAGATGGTGGTATTTTTTGGGCGGTAAGGTCATACGGCGGTAATTTT
AGGGCGGTAGGCGATTATTCATTTTTTGGCGGTAACGACTTCGGCGGAGG
GGTAAAACCAAAGCATGGCGCTAATTTATCGGCGGTAGGCGGTTTTCCGT
TTTTTGGCGGCAACGACTTGGGCGGAGGCGGAGGCGGTAAAAACAAAATA
TGGCGGTAAACCGCCATATTACCGCTTCCGTCCACCAGGGCGGTAATTTC
ACGGCGGGAAAATTAATGACGATAACCCTGGAAATTTTGTCTTTTTGTCG
ATCTTGACGGGCACCGTGACTGCTGTCTTGTTTTGGAGTACGGAGTTGTC
CGGTACCCACGCGAAGGGCCACATCCCGTCCCACCTGCCGCTCCTCGCTG
GACCCAAATGGGCTCGTCACGTCCGTCCCATATCGCCGGGGACGGTCCAT
CCTCCGAGGGCTCCGACAATGTGAAAAACAAGGGATTGATGACCCCTCAC
CTTCATGTTGAGCTGCCTATTTCACGAAACATCATTTTCCAATCATATCA
CACCGTTGTCGAACCGTGGTCGTTCCAGAACATTTCGTCGTACGGGCCGA
ATAGACGCGGAGGCAGCACACAACAGCATCTGCATGAAAGGGGAAGAGCC
CTGTGAAATGGGTGCTGTCCACTGTGGTTTTGTTAACTTGCTTGCGTCAA
TAGTCTAAATATATGTCCAGTTTCGTTCGAGGCTGTAGATCAAACCAACT
GTGCTTGACTCGCTATTAATAGGCGAACCCCCTACTTGCGTACTATCCCC
GGCGACACACCAGGACGAAGTAGCCGCTGGTGATCTACGCCGTATGGCTT
CAGGAGATATCTCTCCACGAACACGCGAGTTGGGCGCAAGAAATCAAGCG
TGTCCACCTTCCCTGGGAGTAACGGAGGATAGAAAGCGAAATACGCGTCC
ACCCTTGGAGCATACGCTGAATGCTAGGCCTCGGGTACGAGCAAGGACGG
GCGAAGGGTCCACCGTGCAGAGCGACGGGGACGAAGTTGTGTCGGGAGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1273:204836..211685+

>mRNA_F-serratus_M_contig1273.2030.1 ID=mRNA_F-serratus_M_contig1273.2030.1|Name=mRNA_F-serratus_M_contig1273.2030.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig1273:204836..211685+ (Fucus serratus male)
TGGAGGCACGGAGACGTCACAGGCACCCAGTGGAGGCACGGAGACGTCAC
AGGCACCCAGGACGAAGTAGCCGCTGGTGATCTACGCCGTATGGCTTCAG
GAGATATCTCTCCACGAACACGCGAGTTGGGCGCAAGAAATCAAGCGTGT
CCACCTTCCCTGGGAGTAACGGAGGATAGAAAGCGAAATACGCGTCCACC
CTTGGAGCATACGCTGAATGCTAGGCCTCGGGTACGAGCAAGGACGGGCG
AAGGGTCCACCGTGCAGAGCGACGGGGACGAAGTTGTGTCGGGAGGCGAC
GAAGTAGCCGCTGGTGATCTACGCCGTATGGCTTCAGGAGATATCTCTCC
ACGAACACGCGAGTTGGGCGCAAGAAATCAAGCGTGTCCACCTTCCCTGG
GAGTAACGGAGGATAGAAAGCGAAATACGCGTCCACCCTTGGAGCATACG
CTGAATGCTAGGCCTCGGGTACGAGCAAGGACGGGCGAAGGGTCCACCGT
GCAGAGCGACGGGGACGAAGTTGTGTCGGGAGGC
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