mRNA_F-serratus_M_contig888.20252.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig888.20252.1
Unique NamemRNA_F-serratus_M_contig888.20252.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig888.20252.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig888contigF-serratus_M_contig888:136065..136398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932580.917905-CDS-F-serratus_M_contig888:136064..1363971622932580.917905-CDS-F-serratus_M_contig888:136064..136397Fucus serratus maleCDSF-serratus_M_contig888 136065..136397 +
1690964376.3607705-CDS-F-serratus_M_contig888:136064..1363971690964376.3607705-CDS-F-serratus_M_contig888:136064..136397Fucus serratus maleCDSF-serratus_M_contig888 136065..136397 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig888.20252.1prot_F-serratus_M_contig888.20252.1Fucus serratus malepolypeptideF-serratus_M_contig888 136065..136397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig888.20252.1

>prot_F-serratus_M_contig888.20252.1 ID=prot_F-serratus_M_contig888.20252.1|Name=mRNA_F-serratus_M_contig888.20252.1|organism=Fucus serratus male|type=polypeptide|length=111bp
ILFSPQEYTAYMLSEVDELRDAIFLSPSERRRKRMERFARELQQGKVNME
LTDAEQESIKEYVEKRSRDEAVQAEANATPVNTVQIFVQICTTYAPNADF
PPDARKYSEED
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mRNA from alignment at F-serratus_M_contig888:136065..136398+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig888.20252.1 ID=mRNA_F-serratus_M_contig888.20252.1|Name=mRNA_F-serratus_M_contig888.20252.1|organism=Fucus serratus male|type=mRNA|length=334bp|location=Sequence derived from alignment at F-serratus_M_contig888:136065..136398+ (Fucus serratus male)
ATTCTTTTCTCACCTCAAGAGTACACCGCCTATATGTTAAGTGAGGTCGA
CGAGCTGCGAGACGCGATCTTCCTTTCCCCGTCAGAAAGGAGGCGAAAAA
GGATGGAAAGGTTTGCTCGTGAACTTCAGCAAGGAAAGGTAAACATGGAA
CTCACGGACGCAGAACAGGAATCGATCAAGGAGTACGTGGAAAAGCGGAG
TCGCGATGAGGCGGTTCAGGCAGAGGCAAATGCTACGCCCGTGAATACTG
TTCAAATCTTCGTACAAATCTGCACGACATATGCACCAAATGCTGATTTT
CCGCCAGATGCGCGTAAATATAGTGAGGAGGACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig888:136065..136398+

>mRNA_F-serratus_M_contig888.20252.1 ID=mRNA_F-serratus_M_contig888.20252.1|Name=mRNA_F-serratus_M_contig888.20252.1|organism=Fucus serratus male|type=CDS|length=666bp|location=Sequence derived from alignment at F-serratus_M_contig888:136065..136398+ (Fucus serratus male)
ATTCTTTTCTCACCTCAAGAGTACACCGCCTATATGTTAAGTGAGGTCGA
CGAGCTGCGAGACGCGATCTTCCTTTCCCCGTCAGAAAGGAGGCGAAAAA
GGATGGAAAGGTTTGCTCGTGAACTTCAGCAAGGAAAGGTAAACATGGAA
CTCACGGACGCAGAACAGGAATCGATCAAGGAGTACGTGGAAAAGCGGAG
TCGCGATGAGGCGGTTCAGGCAGAGGCAAATGCTACGCCCGTGAATACTG
TTCAAATCTTCGTACAAATCTGCACGACATATGCACCAAATGCTGATTTT
CCGCCAGATGCGCGTAAATATAGTGAGGAGGACATTCTTTTCTCACCTCA
AGAGTACACCGCCTATATGTTAAGTGAGGTCGACGAGCTGCGAGACGCGA
TCTTCCTTTCCCCGTCAGAAAGGAGGCGAAAAAGGATGGAAAGGTTTGCT
CGTGAACTTCAGCAAGGAAAGGTAAACATGGAACTCACGGACGCAGAACA
GGAATCGATCAAGGAGTACGTGGAAAAGCGGAGTCGCGATGAGGCGGTTC
AGGCAGAGGCAAATGCTACGCCCGTGAATACTGTTCAAATCTTCGTACAA
ATCTGCACGACATATGCACCAAATGCTGATTTTCCGCCAGATGCGCGTAA
ATATAGTGAGGAGGAC
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