mRNA_F-serratus_M_contig1272.2026.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1272.2026.1
Unique NamemRNA_F-serratus_M_contig1272.2026.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1272.2026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1272contigF-serratus_M_contig1272:254092..255790 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size378
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1272.2026.1prot_F-serratus_M_contig1272.2026.1Fucus serratus malepolypeptideF-serratus_M_contig1272 254092..254813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.7007031-CDS-F-serratus_M_contig1272:254091..2541781622929206.7007031-CDS-F-serratus_M_contig1272:254091..254178Fucus serratus maleCDSF-serratus_M_contig1272 254092..254178 -
1690962750.1135702-CDS-F-serratus_M_contig1272:254091..2541781690962750.1135702-CDS-F-serratus_M_contig1272:254091..254178Fucus serratus maleCDSF-serratus_M_contig1272 254092..254178 -
1622929206.714867-CDS-F-serratus_M_contig1272:254642..2548131622929206.714867-CDS-F-serratus_M_contig1272:254642..254813Fucus serratus maleCDSF-serratus_M_contig1272 254643..254813 -
1690962750.1243348-CDS-F-serratus_M_contig1272:254642..2548131690962750.1243348-CDS-F-serratus_M_contig1272:254642..254813Fucus serratus maleCDSF-serratus_M_contig1272 254643..254813 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929206.7268994-UTR-F-serratus_M_contig1272:254813..2548171622929206.7268994-UTR-F-serratus_M_contig1272:254813..254817Fucus serratus maleUTRF-serratus_M_contig1272 254814..254817 -
1690962750.132614-UTR-F-serratus_M_contig1272:254813..2548171690962750.132614-UTR-F-serratus_M_contig1272:254813..254817Fucus serratus maleUTRF-serratus_M_contig1272 254814..254817 -
1622929206.7387824-UTR-F-serratus_M_contig1272:255674..2557901622929206.7387824-UTR-F-serratus_M_contig1272:255674..255790Fucus serratus maleUTRF-serratus_M_contig1272 255675..255790 -
1690962750.1407528-UTR-F-serratus_M_contig1272:255674..2557901690962750.1407528-UTR-F-serratus_M_contig1272:255674..255790Fucus serratus maleUTRF-serratus_M_contig1272 255675..255790 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1272.2026.1

>prot_F-serratus_M_contig1272.2026.1 ID=prot_F-serratus_M_contig1272.2026.1|Name=mRNA_F-serratus_M_contig1272.2026.1|organism=Fucus serratus male|type=polypeptide|length=86bp
MLATQGALLAFAAAFLAAVNGISLTQVPFYEAMSNGDSVIIAEHGPFTFF
TSCDSSAVTLDIFVEATEEDYIFGSEDDPVNLLPGN
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mRNA from alignment at F-serratus_M_contig1272:254092..255790-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1272.2026.1 ID=mRNA_F-serratus_M_contig1272.2026.1|Name=mRNA_F-serratus_M_contig1272.2026.1|organism=Fucus serratus male|type=mRNA|length=1699bp|location=Sequence derived from alignment at F-serratus_M_contig1272:254092..255790- (Fucus serratus male)
ACCCAACCTAGCTAGCTAGTACAAGATCTGCTCTTCTCAAGTCACGCGAT
TGTTGCCACTTCGAGGAAACTAGTACCAGACCTGCACTGCAATTCCATCA
TCACGTAACAGTAAAGGTGAGTCTACTTGCCACCACGGGCTTTTGCAGAA
TCACGGTGGTCGCAGATTACGCTGCTTCTATATATCCATCGGCGCCTGGG
GCGATTCAGCGGTGTTTTGCCTGCATGAAACTAGTGCAGCTATATGTTTG
CACCAGGTATATTCCTCGTTCGCATCAAAAAGAGATGAGAAATGCCGGGT
TAAATCAAATCAAGACAAGAACGGTTAACCTACTCACACAAAACTAAGTG
TCACCCACGGTCCACCACGCCACGTACCCCGCGATTTGTGAAGCACTAAC
TAACAATCAATGATTTGTGTGTGAAACTCGAGAGTTCGAGTTTAAGGAGG
CAGCGCTTTCCCGTGTAAAATTCTCGCGAATACCGATGGTCTGATGCATA
ACATGATGTAGTCCTTCGTGAGGATTGCTCGTAATGCTCGTTCTATGAAC
AAAGTGCATGTGTGCTTACTTACGCCTTTTTTTATACGAGTAGAGCATTG
GAGAACCAGGATGCTTTTTCGAGTTACATTACATGTACGCGTAAGAAGCT
CTTACCTCGGCCATAGTTTTTCATGCGTCTGTTCTGGTACTTGGGTCAAG
TAGGGCACTAGCTAAAAGTAGTCTGCACGGTGTTTCTCGAGGCATTCCGT
TGGCATCCCCAGAGCTAGTATGTCCGACAAGCACATATATTTACTCCGCG
TGCAACAAATAATGTCCGTGTGAGGTACGAACAGAGTGGATATTGATGGA
GCGATACTGCCGTACGAATCTTGACAGGTCTTCATGAGGGCAACCATTCC
AAACTCGATACATAAATCACCCCCCCCTCTACTGCCGAACTGCCCTCTTT
CTGTAACTTTTCATAATGCGCAGAGCCATGCTTGCTACCCAGGGTGCACT
TCTCGCTTTCGCCGCGGCATTTCTTGCTGCGGTAAACGGCATCAGCCTGA
CGCAGGTCCCTTTCTACGAAGCAATGTCCAATGGAGATAGCGTCATCATC
GCTGAACACGGCCCGTTCACCTTTTTTACCTCGTGCGATTCATCTGCGGT
GAGTAATGTAGCCATCAACTCGGCAAAAATGTAGAGTTCCATGGGTACTA
ACTTCTTCACTAAAATAGTACTCTGTAATGAGTTTCGATAGCATTAACAT
CTGTTGTACAATATAGATATAGCTGTGTGCGTATATTTTTGCCCAGAGTG
TCGACGCCGAAGGTGGCGATGCTCCTCCTGTGGATGGGAACGCTTTACAT
GTTGTTGGTGAATACTGAAATATAGAAATATCATTGGTGTATGTTAGTAG
TTTTCCCTAAAATCATTGCTGTCTATAACTAACACATCCCAAACATGACT
ATCCAAACACGGCAGGCAGATTTGATAGACAGTCTTGTCCTCAAACGTTC
CCCCTTCCCCTGCATCGAACGGCTCACTCGGGTTACATGATTAAGCAGTC
TTCAAGTGTCTATAGTGGCTGCAATTGTACTGTGTTTCTGAGCCCCTCGC
TCCTGACCACAGGTGACGCTGGATATATTCGTCGAGGCCACTGAGGAGGA
CTACATCTTCGGGTCCGAGGATGACCCCGTAAACCTACTGCCGGGAAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1272:254092..255790-

>mRNA_F-serratus_M_contig1272.2026.1 ID=mRNA_F-serratus_M_contig1272.2026.1|Name=mRNA_F-serratus_M_contig1272.2026.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig1272:254092..255790- (Fucus serratus male)
ATGCTTGCTACCCAGGGTGCACTTCTCGCTTTCGCCGCGGCATTTCTTGC
TGCGGTAAACGGCATCAGCCTGACGCAGGTCCCTTTCTACGAAGCAATGT
CCAATGGAGATAGCGTCATCATCGCTGAACACGGCCCGTTCACCTTTTTT
ACCTCGTGCGATTCATCTGCGATGCTTGCTACCCAGGGTGCACTTCTCGC
TTTCGCCGCGGCATTTCTTGCTGCGGTAAACGGCATCAGCCTGACGCAGG
TCCCTTTCTACGAAGCAATGTCCAATGGAGATAGCGTCATCATCGCTGAA
CACGGCCCGTTCACCTTTTTTACCTCGTGCGATTCATCTGCGGTGACGCT
GGATATATTCGTCGAGGCCACTGAGGAGGACTACATCTTCGGGTCCGAGG
ATGACCCCGTAAACCTACTGCCGGGAAACGTGACGCTGGATATATTCGTC
GAGGCCACTGAGGAGGACTACATCTTCGGGTCCGAGGATGACCCCGTAAA
CCTACTGCCGGGAAAC
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