mRNA_F-serratus_M_contig884.20222.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig884.20222.1
Unique NamemRNA_F-serratus_M_contig884.20222.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig884.20222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig884contigF-serratus_M_contig884:136819..137274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig884.20222.1prot_F-serratus_M_contig884.20222.1Fucus serratus malepolypeptideF-serratus_M_contig884 136949..137251 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932573.8518937-UTR-F-serratus_M_contig884:136818..1369481622932573.8518937-UTR-F-serratus_M_contig884:136818..136948Fucus serratus maleUTRF-serratus_M_contig884 136819..136948 +
1690964372.889534-UTR-F-serratus_M_contig884:136818..1369481690964372.889534-UTR-F-serratus_M_contig884:136818..136948Fucus serratus maleUTRF-serratus_M_contig884 136819..136948 +
1622932573.8855672-UTR-F-serratus_M_contig884:137251..1372741622932573.8855672-UTR-F-serratus_M_contig884:137251..137274Fucus serratus maleUTRF-serratus_M_contig884 137252..137274 +
1690964372.9251795-UTR-F-serratus_M_contig884:137251..1372741690964372.9251795-UTR-F-serratus_M_contig884:137251..137274Fucus serratus maleUTRF-serratus_M_contig884 137252..137274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932573.8685443-CDS-F-serratus_M_contig884:136948..1372511622932573.8685443-CDS-F-serratus_M_contig884:136948..137251Fucus serratus maleCDSF-serratus_M_contig884 136949..137251 +
1690964372.9032452-CDS-F-serratus_M_contig884:136948..1372511690964372.9032452-CDS-F-serratus_M_contig884:136948..137251Fucus serratus maleCDSF-serratus_M_contig884 136949..137251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig884.20222.1

>prot_F-serratus_M_contig884.20222.1 ID=prot_F-serratus_M_contig884.20222.1|Name=mRNA_F-serratus_M_contig884.20222.1|organism=Fucus serratus male|type=polypeptide|length=101bp
MSPRADAELLQRLERGSTWRPIEKIPEVSEKNPEGVRSAGARAYPFLRSR
RSWAGRRERSLSESPAKVVRLAFPLPLAGSSLRRCPGAAESLPEDADCGV
*
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mRNA from alignment at F-serratus_M_contig884:136819..137274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig884.20222.1 ID=mRNA_F-serratus_M_contig884.20222.1|Name=mRNA_F-serratus_M_contig884.20222.1|organism=Fucus serratus male|type=mRNA|length=456bp|location=Sequence derived from alignment at F-serratus_M_contig884:136819..137274+ (Fucus serratus male)
GCGTAGGATACTGCTGGGCCGTCCGTATTCTTACTAGTTCTATAGCCATC
GTCGGAGAGGGGGCCAAGGGCCCGCCTTTCTCTACAGTACTGGCTACCAC
TACTCTCAAGGCCCGAAGGTACGAAGAAAAATGAGTCCCCGTGCGGACGC
CGAACTTCTGCAGCGTCTCGAGCGCGGCTCCACGTGGCGCCCAATCGAAA
AAATCCCCGAAGTCAGCGAGAAGAACCCTGAAGGCGTCCGGTCCGCTGGA
GCCAGAGCTTATCCTTTCCTGCGGTCACGGCGATCTTGGGCCGGGCGCCG
AGAGCGGTCGCTGTCGGAGTCTCCAGCAAAAGTCGTCCGTTTGGCGTTTC
CTCTCCCGCTTGCAGGGTCCTCCCTGCGGCGCTGTCCGGGGGCGGCGGAG
TCGCTGCCTGAAGACGCGGACTGTGGAGTGTAGCGTGAAGGGGCCGCGTC
GGTAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig884:136819..137274+

>mRNA_F-serratus_M_contig884.20222.1 ID=mRNA_F-serratus_M_contig884.20222.1|Name=mRNA_F-serratus_M_contig884.20222.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig884:136819..137274+ (Fucus serratus male)
ATGAGTCCCCGTGCGGACGCCGAACTTCTGCAGCGTCTCGAGCGCGGCTC
CACGTGGCGCCCAATCGAAAAAATCCCCGAAGTCAGCGAGAAGAACCCTG
AAGGCGTCCGGTCCGCTGGAGCCAGAGCTTATCCTTTCCTGCGGTCACGG
CGATCTTGGGCCGGGCGCCGAGAGCGGTCGCTGTCGGAGTCTCCAGCAAA
AGTCGTCCGTTTGGCGTTTCCTCTCCCGCTTGCAGGGTCCTCCCTGCGGC
GCTGTCCGGGGGCGGCGGAGTCGCTGCCTGAAGACGCGGACTGTGGAGTG
TAGATGAGTCCCCGTGCGGACGCCGAACTTCTGCAGCGTCTCGAGCGCGG
CTCCACGTGGCGCCCAATCGAAAAAATCCCCGAAGTCAGCGAGAAGAACC
CTGAAGGCGTCCGGTCCGCTGGAGCCAGAGCTTATCCTTTCCTGCGGTCA
CGGCGATCTTGGGCCGGGCGCCGAGAGCGGTCGCTGTCGGAGTCTCCAGC
AAAAGTCGTCCGTTTGGCGTTTCCTCTCCCGCTTGCAGGGTCCTCCCTGC
GGCGCTGTCCGGGGGCGGCGGAGTCGCTGCCTGAAGACGCGGACTGTGGA
GTGTAG
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